Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003736

Physical Location & Seq

Genomic Coordinates Reverse (-)

87509124 .. 87513871

Gene Structure 4748 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ35579

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2241 bp

ATGCATGGTAGGATGAGTGCAAAGGTCGATACGTCTGCATCGGGAACTGGTGGCCAAAAGGTCTCCAAGTTTGCTGCTAAGTCTGGATTTGTTATACCAAAAAACAAGTTATCAGGTTCACTCGTGCCCATCTTTCGGGGAGACAAAAATGTTGGAGCCAGTGATCATGGTGGTGGAGAAAGTAAGAAACAGGTTCAGAGGAAAACGAAATGGGGTGCTGATCTGACTCAAGATGCTTCTGTTAGAAAGGGAAGAGCATTAGCTTATCAGACTCGGGTGGATCAAATTACACAACAGCTGAAATCTGGAATATCAGAGTTTGGAAACAATGAGAACGTGCCATCACCATCTCAGGATCCAGACCACATATCCTCTACATATCAAGTTGACAAGGAGGGTGCAGAACAATTGGAACTGGAAAAGCGGGAAGCCATAGGTGAAATACTAAAGTTGAATCCAAATTACAAGGCTCCAGCTGATTATAAACCTTTGTTGAAAGAGGCAACAGTTCCTATTCCTGTCAATGAATACCCAACATACAATATTCTTGGTCTGATATATGGGCCTGAAGGTGATAATCAGAAGCAATTAGAGAAGGAAACAGGAGCTAAGATTCAAGTCTATGGTACCAAAGCAGAGACGGGAGAGAAGGCTGAAATAAAACAATATGCTGGGAGTGAAATCCAGGCTGAATATGAAAAGTTATATGTTCATGTATCAGCTGACACATTTGAGAAAGTAGATGCAGCTGTTGCTGTAATCGAACTACTAGTCACCTCTGTATCTGGAAATCTGTCGGCTGTTGCCAAAACAGCTTTGGGTGATAATAATGCTCAAGTTCCTAGTCAAGGCCAGGACAGTACCACCACAGATATGGTTCCAACTACTATGGGAGACCAAGGACCGGTGCAACCAGCGACAGGACCTACACAAACTCCACCTCATGTGCAGTTTCAGTACCCTGGTCCATTTTTCTCCACGGGCCAACCTGGCAGTCCAATGAATCTACCGGGCTTCACACCAATGAATTCTCAAAGGCCTATTCTCAACAATGCTGCCCATCCATCAACATCACCTTTCAACTCGACAAACCTGCCGTCATTATTTGGGCCTCCACCAGCTCTTTTTCCCCAGACACAACACCTACCACCAGCGGTTTTGCAGCATACATATATGCCTCAGACCAGTCCTGGTTCTCTTGGCGCACCAAGAAACTTCTCTATGATGGCTTCCCAGCCATCATCAGTTCAAACTCATGTTTCAGCTCCAGTTACATTCTTGGGAAATCGACCCCCAACAGGCCAAAGTAATCATCCCCTTGAATCAATACCTGACTGGCAACTGACACCTGCTGGAAGCTCTGCTGGATGGAGCAGACCACCGGCATCTGCGGGTTTCAGTAATAATATGCACATGGCACCTAATCCTCTAAATCATCTCAATGCAGCTCCAACTTTTACTGCTGTGCCACAACCTCAAGTTGGCCTTCCTTCTACTTTACCAATGCCAGCACTTGCTCAACCCAAACCATATATGAGCCCTATGTCAGGTTCCACTCCAGCTCCTTCACCGGGCATAGTTACATCTTTACATCCACCTCAGCCACCAAGAGTCCCTAGTTCTGTTTCGGGAAATGTACCAAATTTCAGTCCTATAAAACCACTGACAACTCCAAGTCCTGGTGATTTCACTTTCCAGCCTCACCGACCACAAAATCCAACCTTTCAAGCAGTTCCCCAACAAAGCAATCAGTTTTCAGTTCACAATGCTCACCCAGCTGGACCAATGGTGCGACCACAGGTACCATCTTTGCAGTTGCCTGTGCGACAGATGACTCCTCAGCCAGGCAATCAGGTGTTATCAAGGCCACAGGTTGGTGACCAGATTAGTCAACCTTCAGCTCATATAAATGCTGTCCAGTTTGCTAGAAATTCAACTGCCATTTCAGTTCCTCCCAGACTTGCAACATTTCCGGACATCAATCCTGTTGCACCTAGAACGTCACTCCTGCCAATGAGACAGGGGAACTTTAATCAAGCTCACCAAATGCCCAATTTGCCCAGTCCTTTGCCTCCAAGGCCACGAGGTCATATTCAAATTCAGCACAGTTATCCTGCTCAATTGGCCCCAAATCAACAGTTCATCAGCAATCCATTTGCATCTGGTAAGTCGTCTAATCCTGGAGGACACCAACTTTATGATCCATTCTCGCCCACTTCTGACTCTACAGCAAGGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1 SF1-HH

Protein Analysis

746

Amino Acids

79.7

Weight (kDa)

9.31

Isoelectric Point (pI)

53.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SF1-HH	PF16275	61 - 162	8.3e-08	Splicing factor 1 helix-hairpin domain
KH-I_KHDC4-BBP	PF22675	176 - 258	1.5e-13	KHDC4/BBP-like, KH-domain type I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003736)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G32940
fragaria_vesca	FvH4_3g44840 FvH4_3g44840 FvH4_3g44840 FvH4_3g44840 FvH4_3g44840 FvH4_3g44840 FvH4_3g44840 FvH4_3g44840
malus_domestica	MD03G1008800.v1.1 MD03G1008900.v1.1 MD03G1009300.v1.1 MD03G1009900.v1.1 MD03G1010000.v1.1 MD03G1010200.v1.1
prunus_persica	Prupe.6G010100_v2.0.a1
pyrus_communis	pycom03g00890 pycom03g00910 pycom11g00730 pycom11g00740 pycom11g00780
rosa_chinensis	RchiOBHm_Chr5g0081541
rosa_laevigata	RLG00000036946
rosa_multiflora	Rmu_co8214750.1_g000001 Rmu_co8505191.1_g000001 Rmu_sc0028842.1_g000001 Rmu_sc0038011.1_g000001
rosa_roxburghii	Rroxscaffold_1G00002010
rosa_rugosa	Rorug05G0477200
rosa_samantha	Rh5AG528500 Rh5BG553300 Rh5CG576100 Rh5DG563400
rosa_wichuraiana	Rw5G049170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	483
AarI	CACCTGC	1 cut(s)	1357
Acc36I	ACCTGC	2 cut(s)	1101, 1357
Acc65I	GGTACC	2 cut(s)	626, 1801
AccB1I	GGYRCC	3 cut(s)	626, 1417, 1801
AccB7I	CCANNNNNTGG	2 cut(s)	1679, 1874
AccIII	TCCGGA	1 cut(s)	1972
AciI	CCGC	3 cut(s)	424, 1154, 1391
AclWI	GGATC	4 cut(s)	288, 350, 363, 2195
AcoI	YGGCCR	1 cut(s)	52
AcsI	RAATTY	4 cut(s)	1027, 1642, 1930, 2097
AcuI	CTGAAG	2 cut(s)	588, 1881
AfaI	GTAC	5 cut(s)	628, 862, 959, 1638, 1803
AgeI	ACCGGT	1 cut(s)	904
AgsI	TTSAA	9 cut(s)	454, 496, 617, 1081, 1250, 1322, 1727, 1935, 2096
AhlI	ACTAGT	1 cut(s)	769
AjnI	CCWGG	8 cut(s)	684, 852, 961, 988, 1189, 1678, 1843, 2179
Alw26I	GTCTC	5 cut(s)	67, 135, 632, 888, 2011
AlwI	GGATC	4 cut(s)	288, 350, 363, 2195
Ama87I	CYCGRG	1 cut(s)	273
Aor13HI	TCCGGA	1 cut(s)	1972
ApeKI	GCWGC	5 cut(s)	74, 746, 1055, 1162, 1445
ApoI	RAATTY	4 cut(s)	1027, 1642, 1930, 2097
ArsI	GACNNNNNNTTYG	4 cut(s)	756, 788, 1082, 1114
AsiGI	ACCGGT	1 cut(s)	904
Asp718I	GGTACC	2 cut(s)	626, 1801
AspLEI	GCGC	1 cut(s)	1205
AspS9I	GGNCC	8 cut(s)	563, 902, 923, 965, 982, 1109, 1781, 2125
AsuC2I	CCSGG	2 cut(s)	1011, 1572
AvaI	CYCGRG	1 cut(s)	273
AvaII	GGWCC	4 cut(s)	902, 923, 965, 1781
BaeGI	GKGCMC	1 cut(s)	129
BaeI	ACNNNNGTAYC	2 cut(s)	765, 798
BalI	TGGCCA	1 cut(s)	54
BamHI	GGATCC	1 cut(s)	355
BanI	GGYRCC	3 cut(s)	626, 1417, 1801
BanII	GRGCYC	1 cut(s)	1541
BauI	CACGAG	2 cut(s)	122, 2082
BbvCI	CCTCAGC	2 cut(s)	1599, 1839
BbvI	GCAGC	5 cut(s)	61, 758, 1042, 1174, 1457
BccI	CCATC	9 cut(s)	137, 349, 355, 1068, 1072, 1219, 1246, 1362, 1813
BceAI	ACGGC	1 cut(s)	1081
BcgI	CGANNNNNNTGC	4 cut(s)	17, 51, 1075, 1109
BciT130I	CCWGG	8 cut(s)	686, 854, 963, 990, 1191, 1680, 1845, 2181
BclI	TGATCA	1 cut(s)	163
BcnI	CCSGG	2 cut(s)	1011, 1572
BcoDI	GTCTC	5 cut(s)	67, 135, 632, 888, 2011
BcuI	ACTAGT	1 cut(s)	769
BfaI	CTAG	5 cut(s)	770, 843, 1617, 1926, 1995
BfmI	CTRYAG	1 cut(s)	2226
BfuAI	ACCTGC	2 cut(s)	1101, 1357
BglI	GCCNNNNNGGC	2 cut(s)	990, 2077
BisI	GCNGC	5 cut(s)	75, 747, 1056, 1163, 1446
BlsI	GCNGC	5 cut(s)	76, 748, 1057, 1164, 1447
Bme18I	GGWCC	4 cut(s)	902, 923, 965, 1781
BmeT110I	CYCGRG	1 cut(s)	273
BmgT120I	GGNCC	8 cut(s)	563, 902, 923, 965, 982, 1109, 1781, 2125
BmiI	GGNNCC	9 cut(s)	157, 357, 471, 628, 879, 1419, 1552, 1803, 2127
BmrI	ACTGGG	1 cut(s)	2055
BmsI	GCATC	5 cut(s)	47, 223, 733, 1394, 2168
BmuI	ACTGGG	1 cut(s)	2055
BpmI	CTGGAG	4 cut(s)	456, 1251, 1542, 2202
Bpu10I	CCTNAGC	2 cut(s)	1599, 1839
BpuEI	CTTGAG	3 cut(s)	213, 819, 1461
BpuMI	CCSGG	2 cut(s)	1011, 1572
BsaI	GGTCTC	2 cut(s)	67, 888
BsaJI	CCNNGG	4 cut(s)	898, 961, 978, 2075
BsaWI	WCCGGW	2 cut(s)	904, 1972
BsaXI	ACNNNNNCTCC	4 cut(s)	919, 949, 1546, 1576
Bse118I	RCCGGY	2 cut(s)	904, 1381
Bse1I	ACTGG	8 cut(s)	52, 159, 420, 1185, 1268, 1340, 1918, 2061
BseAI	TCCGGA	1 cut(s)	1972
BseBI	CCWGG	8 cut(s)	686, 854, 963, 990, 1191, 1680, 1845, 2181
BseDI	CCNNGG	4 cut(s)	898, 961, 978, 2075
BseGI	GGATG	5 cut(s)	18, 1060, 1312, 1373, 1591
BseMII	CTCAG	4 cut(s)	365, 1193, 1613, 1853
BseNI	ACTGG	8 cut(s)	52, 159, 420, 1185, 1268, 1340, 1918, 2061
BseRI	GAGGAG	1 cut(s)	1827
BseSI	GKGCMC	1 cut(s)	129
BseXI	GCAGC	5 cut(s)	61, 758, 1042, 1174, 1457
BseYI	CCCAGC	3 cut(s)	671, 1233, 1774
BsgI	GTGCAG	2 cut(s)	420, 968
BshNI	GGYRCC	3 cut(s)	626, 1417, 1801
BshTI	ACCGGT	1 cut(s)	904
BsiHKCI	CYCGRG	1 cut(s)	273
BsiSI	CCGG	5 cut(s)	905, 1010, 1382, 1571, 1973
BslFI	GGGAC	1 cut(s)	1598
BsmAI	GTCTC	5 cut(s)	67, 135, 632, 888, 2011
BsmBI	CGTCTC	1 cut(s)	632
BsmFI	GGGAC	1 cut(s)	1598
Bso31I	GGTCTC	2 cut(s)	67, 888
BsoBI	CYCGRG	1 cut(s)	273
Bsp1286I	GDGCHC	2 cut(s)	129, 1541
Bsp13I	TCCGGA	1 cut(s)	1972
Bsp143I	GATC	5 cut(s)	163, 220, 280, 355, 2200
BspACI	CCGC	3 cut(s)	424, 1154, 1391
BspCNI	CTCAG	4 cut(s)	364, 1192, 1612, 1852
BspEI	TCCGGA	1 cut(s)	1972
BspLI	GGNNCC	9 cut(s)	157, 357, 471, 628, 879, 1419, 1552, 1803, 2127
BspMI	ACCTGC	2 cut(s)	1101, 1357
BspPI	GGATC	4 cut(s)	288, 350, 363, 2195
BspQI	GCTCTTC	1 cut(s)	247
BspT107I	GGYRCC	3 cut(s)	626, 1417, 1801
BspTNI	GGTCTC	2 cut(s)	67, 888
BsrFI	RCCGGY	2 cut(s)	904, 1381
BsrI	ACTGG	8 cut(s)	52, 159, 420, 1185, 1268, 1340, 1918, 2061
BssAI	RCCGGY	2 cut(s)	904, 1381
BssECI	CCNNGG	4 cut(s)	898, 961, 978, 2075
BssMI	GATC	5 cut(s)	163, 220, 280, 355, 2200
BssSI	CACGAG	2 cut(s)	122, 2082
BssT1I	CCWWGG	2 cut(s)	898, 2075
Bst2BI	CACGAG	2 cut(s)	122, 2082
Bst2UI	CCWGG	8 cut(s)	686, 854, 963, 990, 1191, 1680, 1845, 2181
Bst4CI	ACNGT	4 cut(s)	508, 860, 2108, 2139
Bst6I	CTCTTC	1 cut(s)	247
BstAPI	GCANNNNNTGC	1 cut(s)	752
BstC8I	GCNNGC	1 cut(s)	1509
BstDEI	CTNAG	6 cut(s)	78, 351, 609, 1179, 1599, 1839
BstDSI	CCRYGG	1 cut(s)	978
BstEII	GGTNACC	1 cut(s)	1877
BstENI	CCTNNNNNAGG	3 cut(s)	846, 1545, 1842
BstF5I	GGATG	5 cut(s)	18, 1060, 1312, 1373, 1591
BstHHI	GCGC	1 cut(s)	1205
BstKTI	GATC	5 cut(s)	166, 223, 283, 358, 2203
BstMAI	GTCTC	5 cut(s)	67, 135, 632, 888, 2011
BstMBI	GATC	5 cut(s)	163, 220, 280, 355, 2200
BstMWI	GCNNNNNNNGC	7 cut(s)	752, 812, 990, 1775, 2056, 2077, 2123
BstNI	CCWGG	8 cut(s)	686, 854, 963, 990, 1191, 1680, 1845, 2181
BstPI	GGTNACC	1 cut(s)	1877
BstSFI	CTRYAG	1 cut(s)	2226
BstSLI	GKGCMC	1 cut(s)	129
BstV1I	GCAGC	5 cut(s)	61, 758, 1042, 1174, 1457
BstX2I	RGATCY	1 cut(s)	355
BstXI	CCANNNNNNTGG	1 cut(s)	874
BstYI	RGATCY	1 cut(s)	355
BtgI	CCRYGG	1 cut(s)	978
BtsCI	GGATG	5 cut(s)	18, 1060, 1312, 1373, 1591
BtsIMutI	CAGTG	2 cut(s)	166, 1661
BveI	ACCTGC	2 cut(s)	1101, 1357
Cac8I	GCNNGC	1 cut(s)	1509
CfoI	GCGC	1 cut(s)	1205
Cfr10I	RCCGGY	2 cut(s)	904, 1381
Cfr13I	GGNCC	8 cut(s)	563, 902, 923, 965, 982, 1109, 1781, 2125
Csp6I	GTAC	5 cut(s)	627, 861, 958, 1637, 1802
CspAI	ACCGGT	1 cut(s)	904
CviAII	CATG	6 cut(s)	5, 167, 713, 944, 1256, 1414
CviQI	GTAC	5 cut(s)	627, 861, 958, 1637, 1802
DdeI	CTNAG	6 cut(s)	78, 351, 609, 1179, 1599, 1839
DpnI	GATC	5 cut(s)	165, 222, 282, 357, 2202
DpnII	GATC	5 cut(s)	163, 220, 280, 355, 2200
EaeI	YGGCCR	1 cut(s)	52
Eam1104I	CTCTTC	1 cut(s)	247
EarI	CTCTTC	1 cut(s)	247
Eco130I	CCWWGG	2 cut(s)	898, 2075
Eco147I	AGGCCT	1 cut(s)	1039
Eco24I	GRGCYC	1 cut(s)	1541
Eco31I	GGTCTC	2 cut(s)	67, 888
Eco47I	GGWCC	4 cut(s)	902, 923, 965, 1781
Eco57I	CTGAAG	2 cut(s)	588, 1881
Eco88I	CYCGRG	1 cut(s)	273
Eco91I	GGTNACC	1 cut(s)	1877
EcoNI	CCTNNNNNAGG	3 cut(s)	846, 1545, 1842
EcoO109I	RGGNCCY	1 cut(s)	923
EcoO65I	GGTNACC	1 cut(s)	1877
EcoRI	GAATTC	1 cut(s)	1027
EcoRII	CCWGG	8 cut(s)	684, 852, 961, 988, 1189, 1678, 1843, 2179
EcoT14I	CCWWGG	2 cut(s)	898, 2075
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	1541
ErhI	CCWWGG	2 cut(s)	898, 2075
Esp3I	CGTCTC	1 cut(s)	632
FaeI	CATG	6 cut(s)	8, 170, 716, 947, 1259, 1417
FalI	AAGNNNNNCTT	2 cut(s)	1470, 1502
FaqI	GGGAC	1 cut(s)	1598
FatI	CATG	6 cut(s)	4, 166, 712, 943, 1255, 1413
FauI	CCCGC	2 cut(s)	417, 1384
FbaI	TGATCA	1 cut(s)	163
Fnu4HI	GCNGC	5 cut(s)	75, 747, 1056, 1163, 1446
FokI	GGATG	5 cut(s)	25, 1047, 1299, 1380, 1578
FriOI	GRGCYC	1 cut(s)	1541
Fsp4HI	GCNGC	5 cut(s)	75, 747, 1056, 1163, 1446
FspBI	CTAG	5 cut(s)	770, 843, 1617, 1926, 1995
GlaI	GCGC	1 cut(s)	1204
GluI	GCNGC	5 cut(s)	75, 747, 1056, 1163, 1446
GsaI	CCCAGC	3 cut(s)	675, 1237, 1778
GsuI	CTGGAG	4 cut(s)	456, 1251, 1542, 2202
HapII	CCGG	5 cut(s)	905, 1010, 1382, 1571, 1973
HhaI	GCGC	1 cut(s)	1205
Hin1II	CATG	6 cut(s)	8, 170, 716, 947, 1259, 1417
Hin6I	GCGC	1 cut(s)	1203
HinP1I	GCGC	1 cut(s)	1203
HincII	GTYRAC	2 cut(s)	388, 1892
HindII	GTYRAC	2 cut(s)	388, 1892
HinfI	GANTC	9 cut(s)	226, 271, 454, 613, 1003, 1322, 1611, 1834, 2222
HpaII	CCGG	5 cut(s)	905, 1010, 1382, 1571, 1973
Hpy166II	GTNNAC	4 cut(s)	119, 388, 1762, 1892
Hpy188I	TCNGA	8 cut(s)	198, 225, 270, 316, 555, 582, 1182, 2221
Hpy188III	TCNNGA	9 cut(s)	42, 84, 230, 306, 353, 359, 786, 1629, 1973
Hpy8I	GTNNAC	4 cut(s)	119, 388, 1762, 1892
HpyAV	CCTTC	7 cut(s)	563, 589, 643, 1496, 1500, 1575, 1905
HpyCH4III	ACNGT	4 cut(s)	508, 860, 2108, 2139
HpyCH4IV	ACGT	3 cut(s)	32, 336, 2000
HpyF10VI	GCNNNNNNNGC	7 cut(s)	752, 812, 990, 1775, 2056, 2077, 2123
HpyF3I	CTNAG	6 cut(s)	78, 351, 609, 1179, 1599, 1839
HpySE526I	ACGT	3 cut(s)	32, 336, 2000
Hsp92II	CATG	6 cut(s)	8, 170, 716, 947, 1259, 1417
HspAI	GCGC	1 cut(s)	1203
Kpn2I	TCCGGA	1 cut(s)	1972
KpnI	GGTACC	2 cut(s)	630, 1805
Ksp22I	TGATCA	1 cut(s)	163
Kzo9I	GATC	5 cut(s)	163, 220, 280, 355, 2200
LguI	GCTCTTC	1 cut(s)	247
LmnI	GCTCC	7 cut(s)	155, 475, 605, 1270, 1371, 1453, 1567
Lsp1109I	GCAGC	5 cut(s)	61, 758, 1042, 1174, 1457
LweI	GCATC	5 cut(s)	47, 223, 733, 1394, 2168
MaeI	CTAG	5 cut(s)	770, 843, 1617, 1926, 1995
MaeII	ACGT	3 cut(s)	32, 336, 2000
MaeIII	GTNAC	5 cut(s)	772, 1270, 1579, 1877, 2001
MalI	GATC	5 cut(s)	165, 222, 282, 357, 2202
MboI	GATC	5 cut(s)	163, 220, 280, 355, 2200
MboII	GAAGA	1 cut(s)	264
MfeI	CAATTG	2 cut(s)	407, 2120
MflI	RGATCY	1 cut(s)	355
MhlI	GDGCHC	2 cut(s)	129, 1541
MlsI	TGGCCA	1 cut(s)	54
MluNI	TGGCCA	1 cut(s)	54
MlyI	GAGTC	5 cut(s)	220, 265, 1620, 1828, 2216
MmeI	TCCRAC	4 cut(s)	133, 905, 1475, 1742
Mox20I	TGGCCA	1 cut(s)	54
Mph1103I	ATGCAT	1 cut(s)	6
MroI	TCCGGA	1 cut(s)	1972
MscI	TGGCCA	1 cut(s)	54
MseI	TTAA	1 cut(s)	2031
MslI	CAYNNNNRTG	5 cut(s)	171, 872, 1022, 1440, 1908
Msp20I	TGGCCA	1 cut(s)	54
MspA1I	CMGCKG	6 cut(s)	298, 476, 722, 749, 1154, 1778
MspI	CCGG	5 cut(s)	905, 1010, 1382, 1571, 1973
MunI	CAATTG	2 cut(s)	407, 2120
MvaI	CCWGG	8 cut(s)	686, 854, 963, 990, 1191, 1680, 1845, 2181
MwoI	GCNNNNNNNGC	7 cut(s)	752, 812, 990, 1775, 2056, 2077, 2123
NciI	CCSGG	2 cut(s)	1011, 1572
NdeII	GATC	5 cut(s)	163, 220, 280, 355, 2200
NlaIII	CATG	6 cut(s)	8, 170, 716, 947, 1259, 1417
NlaIV	GGNNCC	9 cut(s)	157, 357, 471, 628, 879, 1419, 1552, 1803, 2127
NmuCI	GTSAC	3 cut(s)	772, 1877, 2001
NsiI	ATGCAT	1 cut(s)	6
PaqCI	CACCTGC	1 cut(s)	1357
PceI	AGGCCT	1 cut(s)	1039
PciSI	GCTCTTC	1 cut(s)	247
PfeI	GAWTC	4 cut(s)	454, 613, 1003, 1322
PflMI	CCANNNNNTGG	2 cut(s)	1679, 1874
PfoI	TCCNGGA	1 cut(s)	2179
PinAI	ACCGGT	1 cut(s)	904
PkrI	GCNGC	5 cut(s)	76, 748, 1057, 1164, 1447
PleI	GAGTC	5 cut(s)	220, 265, 1619, 1828, 2216
PpsI	GAGTC	5 cut(s)	220, 265, 1619, 1828, 2216
PpuMI	RGGWCCY	1 cut(s)	923
PsiI	TTATAA	1 cut(s)	483
Psp5II	RGGWCCY	1 cut(s)	923
Psp6I	CCWGG	8 cut(s)	684, 852, 961, 988, 1189, 1678, 1843, 2179
PspEI	GGTNACC	1 cut(s)	1877
PspFI	CCCAGC	3 cut(s)	671, 1233, 1774
PspGI	CCWGG	8 cut(s)	684, 852, 961, 988, 1189, 1678, 1843, 2179
PspN4I	GGNNCC	9 cut(s)	157, 357, 471, 628, 879, 1419, 1552, 1803, 2127
PspPI	GGNCC	8 cut(s)	563, 902, 923, 965, 982, 1109, 1781, 2125
PspPPI	RGGWCCY	1 cut(s)	923
PsuI	RGATCY	1 cut(s)	355
PvuII	CAGCTG	5 cut(s)	298, 476, 722, 749, 1778
RsaI	GTAC	5 cut(s)	628, 862, 959, 1638, 1803
RsaNI	GTAC	5 cut(s)	627, 861, 958, 1637, 1802
RseI	CAYNNNNRTG	5 cut(s)	171, 872, 1022, 1440, 1908
SapI	GCTCTTC	1 cut(s)	247
SaqAI	TTAA	1 cut(s)	2031
SatI	GCNGC	5 cut(s)	75, 747, 1056, 1163, 1446
Sau3AI	GATC	5 cut(s)	163, 220, 280, 355, 2200
Sau96I	GGNCC	8 cut(s)	563, 902, 923, 965, 982, 1109, 1781, 2125
SchI	GAGTC	5 cut(s)	220, 265, 1620, 1828, 2216
SduI	GDGCHC	2 cut(s)	129, 1541
SfaNI	GCATC	5 cut(s)	47, 223, 733, 1394, 2168
SfcI	CTRYAG	1 cut(s)	2226
SinI	GGWCC	4 cut(s)	902, 923, 965, 1781
SmiMI	CAYNNNNRTG	5 cut(s)	171, 872, 1022, 1440, 1908
SmlI	CTYRAG	3 cut(s)	228, 834, 1476
SmoI	CTYRAG	3 cut(s)	228, 834, 1476
SpeI	ACTAGT	1 cut(s)	769
SseBI	AGGCCT	1 cut(s)	1039
SsiI	CCGC	3 cut(s)	424, 1154, 1391
SspI	AATATT	1 cut(s)	544
SspMI	CTAG	5 cut(s)	770, 843, 1617, 1926, 1995
StuI	AGGCCT	1 cut(s)	1039
StyI	CCWWGG	2 cut(s)	898, 2075
TaaI	ACNGT	4 cut(s)	508, 860, 2108, 2139
TaiI	ACGT	3 cut(s)	35, 339, 2003
TaqI	TCGA	4 cut(s)	27, 762, 1085, 1288
TfiI	GAWTC	4 cut(s)	454, 613, 1003, 1322
Tru1I	TTAA	1 cut(s)	2031
Tru9I	TTAA	1 cut(s)	2031
TscAI	CASTG	2 cut(s)	166, 1668
TseFI	GTSAC	3 cut(s)	772, 1877, 2001
TseI	GCWGC	5 cut(s)	74, 746, 1055, 1162, 1445
Tsp45I	GTSAC	3 cut(s)	772, 1877, 2001
TspDTI	ATGAA	6 cut(s)	540, 701, 711, 1016, 1040, 2131
TspRI	CASTG	2 cut(s)	166, 1668
Van91I	CCANNNNNTGG	2 cut(s)	1679, 1874
VpaK11BI	GGWCC	4 cut(s)	902, 923, 965, 1781
XagI	CCTNNNNNAGG	3 cut(s)	846, 1545, 1842
XapI	RAATTY	4 cut(s)	1027, 1642, 1930, 2097
XcmI	CCANNNNNNNNNTGG	2 cut(s)	814, 871
XspI	CTAG	5 cut(s)	770, 843, 1617, 1926, 1995
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.