Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0028842.1

Orthogroup ID

OG0003736

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 832

Gene Structure 831 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0028842.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

atggttccaactactatggtaaaccaaggactggtgcaaccagcgacaggacctacacaaactccaccgcatgtgcagtttcagtaccctggtccatttttctccacaggccaacctggcagtccaatgaatctaccgggcttcacaccaatgaattctcaaaggcctattctcaacaatgctgcccatccatcaacatcacctttcaactcgacaaacctgccgtcattatttgggcctccaccagctctttttccccagacacaacacctaccaccagcggttttgcagcatacatatatgcctcagaccagtcctggttctcttggcgcaccaagaaacttctctatgatggcttcccagccttcatcagttcaaactaatgtttcagctccagttacattcttgggaaatcgacccccaacaggccaaagtaatcatccccttgaatcaatacctgactggcaactgacacctgctggaagctctgctggatggagcagaccaccgacatctgcaggtttcagtaataatatgcacatggcacctaatcctctaaatcatctcaatgcagctccaacttttactgctgtgccacaacctcaaattggccttccttctactttaccaatgccagcacttgctcaacccaaaccatatatgagccctatgtcaggttccgctccagctccttcacctggcatagttacatctttacatccacctcagccaccaagagtccctagttctatttcgggaaatgtaccaaatttcagtcctataaaaccactgacaactccaagtcctggtgatttcactttccagcctcac

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1 SF1-HH

Protein Analysis

277

Amino Acids

29.06

Weight (kDa)

10.15

Isoelectric Point (pI)

71.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003736)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G32940
fragaria_vesca	FvH4_3g44840 FvH4_3g44840 FvH4_3g44840 FvH4_3g44840 FvH4_3g44840 FvH4_3g44840 FvH4_3g44840 FvH4_3g44840
malus_domestica	MD03G1008800.v1.1 MD03G1008900.v1.1 MD03G1009300.v1.1 MD03G1009900.v1.1 MD03G1010000.v1.1 MD03G1010200.v1.1
prunus_persica	Prupe.6G010100_v2.0.a1
pyrus_communis	pycom03g00890 pycom03g00910 pycom11g00730 pycom11g00740 pycom11g00780
rosa_chinensis	RchiOBHm_Chr5g0081541
rosa_laevigata	RLG00000036946
rosa_multiflora	Rmu_co8214750.1_g000001 Rmu_co8505191.1_g000001 Rmu_sc0028842.1_g000001 Rmu_sc0038011.1_g000001
rosa_roxburghii	Rroxscaffold_1G00002010
rosa_rugosa	Rorug05G0477200
rosa_samantha	Rh5AG528500 Rh5BG553300 Rh5CG576100 Rh5DG563400
rosa_wichuraiana	Rw5G049170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	484
Acc36I	ACCTGC	3 cut(s)	228, 484, 509
AccB1I	GGYRCC	1 cut(s)	544
AccB7I	CCANNNNNTGG	2 cut(s)	31, 806
AccBSI	CCGCTC	1 cut(s)	683
AciI	CCGC	3 cut(s)	68, 281, 681
AcsI	RAATTY	2 cut(s)	154, 769
AfaI	GTAC	2 cut(s)	86, 765
AfiI	CCNNNNNNNGG	7 cut(s)	31, 47, 425, 608, 674, 698, 806
AgsI	TTSAA	3 cut(s)	208, 377, 449
AjnI	CCWGG	5 cut(s)	88, 115, 316, 697, 805
AluBI	AGCT	5 cut(s)	248, 392, 486, 575, 689
AluI	AGCT	5 cut(s)	248, 392, 486, 575, 689
AoxI	GGCC	5 cut(s)	109, 164, 236, 427, 610
ApeKI	GCWGC	3 cut(s)	182, 289, 572
ApoI	RAATTY	2 cut(s)	154, 769
ArsI	GACNNNNNNTTYG	2 cut(s)	209, 241
AspLEI	GCGC	1 cut(s)	332
AspS9I	GGNCC	3 cut(s)	50, 92, 236
AsuC2I	CCSGG	1 cut(s)	138
AsuHPI	GGTGA	3 cut(s)	192, 687, 821
AvaII	GGWCC	2 cut(s)	50, 92
BanI	GGYRCC	1 cut(s)	544
BanII	GRGCYC	1 cut(s)	668
BbvCI	CCTCAGC	1 cut(s)	726
BbvI	GCAGC	3 cut(s)	169, 301, 584
BccI	CCATC	4 cut(s)	195, 199, 346, 489
BceAI	ACGGC	1 cut(s)	208
BcgI	CGANNNNNNTGC	2 cut(s)	202, 236
BciT130I	CCWGG	5 cut(s)	90, 117, 318, 699, 807
BcnI	CCSGG	1 cut(s)	138
BfaI	CTAG	1 cut(s)	744
BfmI	CTRYAG	1 cut(s)	516
BfuAI	ACCTGC	3 cut(s)	228, 484, 509
BglI	GCCNNNNNGGC	1 cut(s)	117
BisI	GCNGC	3 cut(s)	183, 290, 573
BlsI	GCNGC	3 cut(s)	184, 291, 574
Bme1390I	CCNGG	6 cut(s)	90, 117, 138, 318, 699, 807
Bme18I	GGWCC	2 cut(s)	50, 92
BmgT120I	GGNCC	3 cut(s)	50, 92, 236
BmiI	GGNNCC	3 cut(s)	6, 546, 679
BmrFI	CCNGG	6 cut(s)	90, 117, 138, 318, 699, 807
BpmI	CTGGAG	2 cut(s)	378, 669
Bpu10I	CCTNAGC	1 cut(s)	726
BpuMI	CCSGG	1 cut(s)	138
BsaJI	CCNNGG	2 cut(s)	25, 88
BsaXI	ACNNNNNCTCC	2 cut(s)	46, 76
Bsc4I	CCNNNNNNNGG	7 cut(s)	31, 47, 425, 608, 674, 698, 806
Bse1I	ACTGG	4 cut(s)	36, 312, 395, 467
BseBI	CCWGG	5 cut(s)	90, 117, 318, 699, 807
BseDI	CCNNGG	2 cut(s)	25, 88
BseGI	GGATG	4 cut(s)	187, 439, 500, 718
BseLI	CCNNNNNNNGG	7 cut(s)	31, 47, 425, 608, 674, 698, 806
BseMII	CTCAG	2 cut(s)	320, 740
BseNI	ACTGG	4 cut(s)	36, 312, 395, 467
BseXI	GCAGC	3 cut(s)	169, 301, 584
BseYI	CCCAGC	1 cut(s)	360
BsgI	GTGCAG	1 cut(s)	95
BshFI	GGCC	5 cut(s)	111, 166, 238, 429, 612
BshNI	GGYRCC	1 cut(s)	544
BsiSI	CCGG	1 cut(s)	137
BslFI	GGGAC	1 cut(s)	725
BslI	CCNNNNNNNGG	7 cut(s)	31, 47, 425, 608, 674, 698, 806
BsmFI	GGGAC	1 cut(s)	725
BsnI	GGCC	5 cut(s)	111, 166, 238, 429, 612
Bsp1286I	GDGCHC	1 cut(s)	668
BspACI	CCGC	3 cut(s)	68, 281, 681
BspANI	GGCC	5 cut(s)	111, 166, 238, 429, 612
BspCNI	CTCAG	2 cut(s)	319, 739
BspLI	GGNNCC	3 cut(s)	6, 546, 679
BspMAI	CTGCAG	1 cut(s)	520
BspMI	ACCTGC	3 cut(s)	228, 484, 509
BspT107I	GGYRCC	1 cut(s)	544
BsrBI	CCGCTC	1 cut(s)	683
BsrI	ACTGG	4 cut(s)	36, 312, 395, 467
BssECI	CCNNGG	2 cut(s)	25, 88
BssT1I	CCWWGG	1 cut(s)	25
Bst2UI	CCWGG	5 cut(s)	90, 117, 318, 699, 807
BstC8I	GCNNGC	1 cut(s)	636
BstDEI	CTNAG	2 cut(s)	306, 726
BstENI	CCTNNNNNAGG	1 cut(s)	672
BstF5I	GGATG	4 cut(s)	187, 439, 500, 718
BstHHI	GCGC	1 cut(s)	332
BstMWI	GCNNNNNNNGC	1 cut(s)	117
BstNI	CCWGG	5 cut(s)	90, 117, 318, 699, 807
BstNSI	RCATGY	1 cut(s)	74
BstSCI	CCNGG	6 cut(s)	88, 115, 136, 316, 697, 805
BstSFI	CTRYAG	1 cut(s)	516
BstV1I	GCAGC	3 cut(s)	169, 301, 584
BsuRI	GGCC	5 cut(s)	111, 166, 238, 429, 612
BtsCI	GGATG	4 cut(s)	187, 439, 500, 718
BtsIMutI	CAGTG	1 cut(s)	788
BveI	ACCTGC	3 cut(s)	228, 484, 509
Cac8I	GCNNGC	1 cut(s)	636
CfoI	GCGC	1 cut(s)	332
Cfr13I	GGNCC	3 cut(s)	50, 92, 236
Csp6I	GTAC	2 cut(s)	85, 764
CviAII	CATG	2 cut(s)	71, 541
CviQI	GTAC	2 cut(s)	85, 764
DdeI	CTNAG	2 cut(s)	306, 726
Eco130I	CCWWGG	1 cut(s)	25
Eco147I	AGGCCT	1 cut(s)	166
Eco24I	GRGCYC	1 cut(s)	668
Eco47I	GGWCC	2 cut(s)	50, 92
EcoNI	CCTNNNNNAGG	1 cut(s)	672
EcoO109I	RGGNCCY	1 cut(s)	50
EcoRI	GAATTC	1 cut(s)	154
EcoRII	CCWGG	5 cut(s)	88, 115, 316, 697, 805
EcoT14I	CCWWGG	1 cut(s)	25
EcoT38I	GRGCYC	1 cut(s)	668
ErhI	CCWWGG	1 cut(s)	25
FaeI	CATG	2 cut(s)	74, 544
FaqI	GGGAC	1 cut(s)	725
FatI	CATG	2 cut(s)	70, 540
Fnu4HI	GCNGC	3 cut(s)	183, 290, 573
FokI	GGATG	4 cut(s)	174, 426, 507, 705
FriOI	GRGCYC	1 cut(s)	668
Fsp4HI	GCNGC	3 cut(s)	183, 290, 573
FspBI	CTAG	1 cut(s)	744
GlaI	GCGC	1 cut(s)	331
GluI	GCNGC	3 cut(s)	183, 290, 573
GsaI	CCCAGC	1 cut(s)	364
GsuI	CTGGAG	2 cut(s)	378, 669
HaeIII	GGCC	5 cut(s)	111, 166, 238, 429, 612
HapII	CCGG	1 cut(s)	137
HhaI	GCGC	1 cut(s)	332
Hin1II	CATG	2 cut(s)	74, 544
Hin6I	GCGC	1 cut(s)	330
HinP1I	GCGC	1 cut(s)	330
HinfI	GANTC	3 cut(s)	130, 449, 738
HpaII	CCGG	1 cut(s)	137
HphI	GGTGA	3 cut(s)	192, 687, 821
Hpy166II	GTNNAC	1 cut(s)	22
Hpy188I	TCNGA	1 cut(s)	309
Hpy188III	TCNNGA	1 cut(s)	756
Hpy8I	GTNNAC	1 cut(s)	22
HpyAV	CCTTC	4 cut(s)	375, 623, 627, 702
HpyCH4V	TGCA	6 cut(s)	37, 76, 289, 518, 538, 572
HpyF10VI	GCNNNNNNNGC	1 cut(s)	117
HpyF3I	CTNAG	2 cut(s)	306, 726
Hsp92II	CATG	2 cut(s)	74, 544
HspAI	GCGC	1 cut(s)	330
LmnI	GCTCC	5 cut(s)	397, 498, 580, 688, 694
Lsp1109I	GCAGC	3 cut(s)	169, 301, 584
MaeI	CTAG	1 cut(s)	744
MaeIII	GTNAC	2 cut(s)	397, 706
MbiI	CCGCTC	1 cut(s)	683
MhlI	GDGCHC	1 cut(s)	668
MluCI	AATT	3 cut(s)	154, 606, 769
MlyI	GAGTC	1 cut(s)	747
MmeI	TCCRAC	2 cut(s)	32, 602
MnlI	CCTC	5 cut(s)	249, 315, 564, 612, 735
MslI	CAYNNNNRTG	2 cut(s)	149, 567
MspA1I	CMGCKG	1 cut(s)	281
MspI	CCGG	1 cut(s)	137
MspR9I	CCNGG	6 cut(s)	90, 117, 138, 318, 699, 807
MvaI	CCWGG	5 cut(s)	90, 117, 318, 699, 807
MwoI	GCNNNNNNNGC	1 cut(s)	117
NciI	CCSGG	1 cut(s)	138
NlaIII	CATG	2 cut(s)	74, 544
NlaIV	GGNNCC	3 cut(s)	6, 546, 679
NspI	RCATGY	1 cut(s)	74
PaqCI	CACCTGC	1 cut(s)	484
PceI	AGGCCT	1 cut(s)	166
PfeI	GAWTC	2 cut(s)	130, 449
PflMI	CCANNNNNTGG	2 cut(s)	31, 806
PkrI	GCNGC	3 cut(s)	184, 291, 574
PleI	GAGTC	1 cut(s)	746
PpsI	GAGTC	1 cut(s)	746
PpuMI	RGGWCCY	1 cut(s)	50
Psp5II	RGGWCCY	1 cut(s)	50
Psp6I	CCWGG	5 cut(s)	88, 115, 316, 697, 805
PspFI	CCCAGC	1 cut(s)	360
PspGI	CCWGG	5 cut(s)	88, 115, 316, 697, 805
PspN4I	GGNNCC	3 cut(s)	6, 546, 679
PspPI	GGNCC	3 cut(s)	50, 92, 236
PspPPI	RGGWCCY	1 cut(s)	50
PstI	CTGCAG	1 cut(s)	520
RsaI	GTAC	2 cut(s)	86, 765
RsaNI	GTAC	2 cut(s)	85, 764
RseI	CAYNNNNRTG	2 cut(s)	149, 567
SatI	GCNGC	3 cut(s)	183, 290, 573
Sau96I	GGNCC	3 cut(s)	50, 92, 236
SchI	GAGTC	1 cut(s)	747
ScrFI	CCNGG	6 cut(s)	90, 117, 138, 318, 699, 807
SduI	GDGCHC	1 cut(s)	668
SfcI	CTRYAG	1 cut(s)	516
SinI	GGWCC	2 cut(s)	50, 92
SmiMI	CAYNNNNRTG	2 cut(s)	149, 567
Sse9I	AATT	3 cut(s)	154, 606, 769
SseBI	AGGCCT	1 cut(s)	166
SsiI	CCGC	3 cut(s)	68, 281, 681
SspMI	CTAG	1 cut(s)	744
StuI	AGGCCT	1 cut(s)	166
StyD4I	CCNGG	6 cut(s)	88, 115, 136, 316, 697, 805
StyI	CCWWGG	1 cut(s)	25
TaqI	TCGA	2 cut(s)	212, 415
TasI	AATT	3 cut(s)	154, 606, 769
TfiI	GAWTC	2 cut(s)	130, 449
TscAI	CASTG	1 cut(s)	795
TseI	GCWGC	3 cut(s)	182, 289, 572
TspDTI	ATGAA	3 cut(s)	143, 167, 357
TspRI	CASTG	1 cut(s)	795
Van91I	CCANNNNNTGG	2 cut(s)	31, 806
VpaK11BI	GGWCC	2 cut(s)	50, 92
XagI	CCTNNNNNAGG	1 cut(s)	672
XapI	RAATTY	2 cut(s)	154, 769
XceI	RCATGY	1 cut(s)	74
XspI	CTAG	1 cut(s)	744

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.