Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8214750.1

Orthogroup ID

OG0003736

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 693

Gene Structure 692 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8214750.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 353 bp

atgagtgcaaaggtcgatatgtctgcatcgggaactggtggccaaaaggtctccaagtttgctgctaagtctggatttgttataccaaaaaacaagttatcaggttcactcgtgcccatcttccggggagacaaaaatgttggagtcagtgatcatggtggtggagaaagtaagaaacaggttcagaggaaaacgaaatggggtgctgatctgactcaagatgcttctgttagaaagggaagagcattagcttatcagactcgggtggatcaaattacacaacagctgaaatctggaatatcagagtttggaaacaatgagaacgtgccatcaccatctcaggatccagacca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1 SF1-HH

Protein Analysis

117

Amino Acids

12.42

Weight (kDa)

9.87

Isoelectric Point (pI)

26.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003736)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G32940
fragaria_vesca	FvH4_3g44840 FvH4_3g44840 FvH4_3g44840 FvH4_3g44840 FvH4_3g44840 FvH4_3g44840 FvH4_3g44840 FvH4_3g44840
malus_domestica	MD03G1008800.v1.1 MD03G1008900.v1.1 MD03G1009300.v1.1 MD03G1009900.v1.1 MD03G1010000.v1.1 MD03G1010200.v1.1
prunus_persica	Prupe.6G010100_v2.0.a1
pyrus_communis	pycom03g00890 pycom03g00910 pycom11g00730 pycom11g00740 pycom11g00780
rosa_chinensis	RchiOBHm_Chr5g0081541
rosa_laevigata	RLG00000036946
rosa_multiflora	Rmu_co8214750.1_g000001 Rmu_co8505191.1_g000001 Rmu_sc0028842.1_g000001 Rmu_sc0038011.1_g000001
rosa_roxburghii	Rroxscaffold_1G00002010
rosa_rugosa	Rorug05G0477200
rosa_samantha	Rh5AG528500 Rh5BG553300 Rh5CG576100 Rh5DG563400
rosa_wichuraiana	Rw5G049170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	276, 338, 351
AcoI	YGGCCR	1 cut(s)	40
AfiI	CCNNNNNNNGG	1 cut(s)	123
AluBI	AGCT	2 cut(s)	251, 286
AluI	AGCT	2 cut(s)	251, 286
Alw26I	GTCTC	2 cut(s)	55, 123
AlwI	GGATC	3 cut(s)	276, 338, 351
Ama87I	CYCGRG	1 cut(s)	261
AoxI	GGCC	1 cut(s)	40
ApeKI	GCWGC	1 cut(s)	62
AsuC2I	CCSGG	1 cut(s)	125
AsuHPI	GGTGA	1 cut(s)	324
AvaI	CYCGRG	1 cut(s)	261
BaeGI	GKGCMC	1 cut(s)	117
BalI	TGGCCA	1 cut(s)	42
BamHI	GGATCC	1 cut(s)	343
BauI	CACGAG	1 cut(s)	110
BbvI	GCAGC	1 cut(s)	49
BccI	CCATC	3 cut(s)	125, 337, 343
BcgI	CGANNNNNNTGC	2 cut(s)	5, 39
BclI	TGATCA	1 cut(s)	151
BcnI	CCSGG	1 cut(s)	125
BcoDI	GTCTC	2 cut(s)	55, 123
BisI	GCNGC	1 cut(s)	63
BlsI	GCNGC	1 cut(s)	64
Bme1390I	CCNGG	1 cut(s)	125
BmeT110I	CYCGRG	1 cut(s)	261
BmiI	GGNNCC	1 cut(s)	345
BmrFI	CCNGG	1 cut(s)	125
BmsI	GCATC	2 cut(s)	35, 211
BpuEI	CTTGAG	1 cut(s)	201
BpuMI	CCSGG	1 cut(s)	125
BsaI	GGTCTC	1 cut(s)	55
BsaJI	CCNNGG	1 cut(s)	124
Bsc4I	CCNNNNNNNGG	1 cut(s)	123
Bse1I	ACTGG	1 cut(s)	40
BseDI	CCNNGG	1 cut(s)	124
BseLI	CCNNNNNNNGG	1 cut(s)	123
BseMII	CTCAG	1 cut(s)	353
BseNI	ACTGG	1 cut(s)	40
BseSI	GKGCMC	1 cut(s)	117
BseXI	GCAGC	1 cut(s)	49
BshFI	GGCC	1 cut(s)	42
BsiHKCI	CYCGRG	1 cut(s)	261
BsiSI	CCGG	1 cut(s)	124
BslI	CCNNNNNNNGG	1 cut(s)	123
BsmAI	GTCTC	2 cut(s)	55, 123
BsnI	GGCC	1 cut(s)	42
Bso31I	GGTCTC	1 cut(s)	55
BsoBI	CYCGRG	1 cut(s)	261
Bsp1286I	GDGCHC	1 cut(s)	117
Bsp143I	GATC	4 cut(s)	151, 208, 268, 343
BspANI	GGCC	1 cut(s)	42
BspCNI	CTCAG	1 cut(s)	352
BspLI	GGNNCC	1 cut(s)	345
BspPI	GGATC	3 cut(s)	276, 338, 351
BspQI	GCTCTTC	1 cut(s)	235
BspTNI	GGTCTC	1 cut(s)	55
BsrI	ACTGG	1 cut(s)	40
BssECI	CCNNGG	1 cut(s)	124
BssMI	GATC	4 cut(s)	151, 208, 268, 343
BssSI	CACGAG	1 cut(s)	110
Bst2BI	CACGAG	1 cut(s)	110
Bst6I	CTCTTC	1 cut(s)	235
BstDEI	CTNAG	2 cut(s)	66, 339
BstKTI	GATC	4 cut(s)	154, 211, 271, 346
BstMAI	GTCTC	2 cut(s)	55, 123
BstMBI	GATC	4 cut(s)	151, 208, 268, 343
BstSCI	CCNGG	1 cut(s)	123
BstSLI	GKGCMC	1 cut(s)	117
BstV1I	GCAGC	1 cut(s)	49
BstX2I	RGATCY	1 cut(s)	343
BstYI	RGATCY	1 cut(s)	343
BsuRI	GGCC	1 cut(s)	42
BtsIMutI	CAGTG	1 cut(s)	154
CviAII	CATG	1 cut(s)	155
CviJI	RGCY	3 cut(s)	42, 251, 286
CviKI_1	RGCY	3 cut(s)	42, 251, 286
DdeI	CTNAG	2 cut(s)	66, 339
DpnI	GATC	4 cut(s)	153, 210, 270, 345
DpnII	GATC	4 cut(s)	151, 208, 268, 343
EaeI	YGGCCR	1 cut(s)	40
Eam1104I	CTCTTC	1 cut(s)	235
EarI	CTCTTC	1 cut(s)	235
Eco31I	GGTCTC	1 cut(s)	55
Eco88I	CYCGRG	1 cut(s)	261
FaeI	CATG	1 cut(s)	158
FaiI	YATR	3 cut(s)	20, 83, 156
FatI	CATG	1 cut(s)	154
FbaI	TGATCA	1 cut(s)	151
Fnu4HI	GCNGC	1 cut(s)	63
Fsp4HI	GCNGC	1 cut(s)	63
GluI	GCNGC	1 cut(s)	63
HaeIII	GGCC	1 cut(s)	42
HapII	CCGG	1 cut(s)	124
Hin1II	CATG	1 cut(s)	158
HinfI	GANTC	3 cut(s)	144, 214, 259
HpaII	CCGG	1 cut(s)	124
HphI	GGTGA	1 cut(s)	324
Hpy166II	GTNNAC	1 cut(s)	107
Hpy188I	TCNGA	4 cut(s)	186, 213, 258, 304
Hpy188III	TCNNGA	6 cut(s)	30, 72, 218, 294, 341, 347
Hpy8I	GTNNAC	1 cut(s)	107
HpyCH4IV	ACGT	1 cut(s)	324
HpyCH4V	TGCA	2 cut(s)	8, 26
HpyF3I	CTNAG	2 cut(s)	66, 339
HpySE526I	ACGT	1 cut(s)	324
Hsp92II	CATG	1 cut(s)	158
Ksp22I	TGATCA	1 cut(s)	151
Kzo9I	GATC	4 cut(s)	151, 208, 268, 343
LguI	GCTCTTC	1 cut(s)	235
LpnPI	CCDG	7 cut(s)	21, 57, 87, 137, 164, 279, 326
Lsp1109I	GCAGC	1 cut(s)	49
LweI	GCATC	2 cut(s)	35, 211
MaeII	ACGT	1 cut(s)	324
MalI	GATC	4 cut(s)	153, 210, 270, 345
MboI	GATC	4 cut(s)	151, 208, 268, 343
MboII	GAAGA	2 cut(s)	112, 252
MflI	RGATCY	1 cut(s)	343
MhlI	GDGCHC	1 cut(s)	117
MlsI	TGGCCA	1 cut(s)	42
MluCI	AATT	1 cut(s)	273
MluNI	TGGCCA	1 cut(s)	42
MlyI	GAGTC	3 cut(s)	153, 208, 253
MmeI	TCCRAC	1 cut(s)	121
MnlI	CCTC	1 cut(s)	180
Mox20I	TGGCCA	1 cut(s)	42
MscI	TGGCCA	1 cut(s)	42
MslI	CAYNNNNRTG	1 cut(s)	159
Msp20I	TGGCCA	1 cut(s)	42
MspA1I	CMGCKG	1 cut(s)	286
MspI	CCGG	1 cut(s)	124
MspR9I	CCNGG	1 cut(s)	125
NciI	CCSGG	1 cut(s)	125
NdeII	GATC	4 cut(s)	151, 208, 268, 343
NlaIII	CATG	1 cut(s)	158
NlaIV	GGNNCC	1 cut(s)	345
PciSI	GCTCTTC	1 cut(s)	235
PkrI	GCNGC	1 cut(s)	64
PleI	GAGTC	3 cut(s)	152, 208, 253
PpsI	GAGTC	3 cut(s)	152, 208, 253
PspN4I	GGNNCC	1 cut(s)	345
PsuI	RGATCY	1 cut(s)	343
PvuII	CAGCTG	1 cut(s)	286
RseI	CAYNNNNRTG	1 cut(s)	159
SapI	GCTCTTC	1 cut(s)	235
SatI	GCNGC	1 cut(s)	63
Sau3AI	GATC	4 cut(s)	151, 208, 268, 343
SchI	GAGTC	3 cut(s)	153, 208, 253
ScrFI	CCNGG	1 cut(s)	125
SduI	GDGCHC	1 cut(s)	117
SetI	ASST	7 cut(s)	15, 51, 106, 183, 253, 288, 327
SfaNI	GCATC	2 cut(s)	35, 211
SmiMI	CAYNNNNRTG	1 cut(s)	159
SmlI	CTYRAG	1 cut(s)	216
SmoI	CTYRAG	1 cut(s)	216
Sse9I	AATT	1 cut(s)	273
StyD4I	CCNGG	1 cut(s)	123
TaiI	ACGT	1 cut(s)	327
TaqI	TCGA	1 cut(s)	15
TasI	AATT	1 cut(s)	273
TscAI	CASTG	1 cut(s)	154
TseI	GCWGC	1 cut(s)	62
TspRI	CASTG	1 cut(s)	154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.