Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0010855

Physical Location & Seq

Genomic Coordinates Reverse (-)

5100891 .. 5101585

Gene Structure 695 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1063500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGAAGCTAGCCATCACCGTATCCAGTACTTCCCCAAAACCGCTATTGTCAAGAATTATCTCCCTCGTCTTTGATGGAGTTTTTGTCATACTTGTTTTATCTCTCCTCCTAGGATTCTTCCAAGATATGTTCCAATCACGAGGAAAAGTCCAGTCCTTCGACTCCAACCATGGGAAGACAAAGTCAACAGAGATTCCGGGATCACCTTTACCGCCTTATATGTGTCGTTACTTTCCACTGGCTGAGATTAAAGCCGCCACCCAAAACTTCAACGATACTTTGGTTATTGGTGTTGGCGGGTTTGGCAATGTGTACAAAGGGTGTATTGACGGTGGTGTCACTTCTGTTGCTATCAAACGGTTGAGACCAGAGTCATCACAGGGGGCCCGCGAGTTCAAGACGGAAATCGAGCTGTTTTCCCAACTCTGCCACTGCCACTTGGTTTCACTCATTGGTTACTGCTCAGATAATGGCAAGATGATCTTGGTTTACGATGACATGGTACGCAGCACTCTTGGTGACCATCTCTATCACATTGGTAACCTTAAGCCTCTTCCTTGGGAACAACGACTCCAAATTTGTATTGGCGCAACGCGAGGGTTGCACTACCTTCACAGTGGCGCCAATGGCTCCATTATTCACTGTGATGTTAAGAGCACAAATATTTTATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009723 GO:0009725 GO:0009741 GO:0009787 GO:0009788 GO:0009791 GO:0009856 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010118 GO:0010483 GO:0010646 GO:0010648 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0022622 GO:0023051 GO:0023057 GO:0030054 GO:0030308 GO:0030312 GO:0032501 GO:0032502 GO:0033993 GO:0036211 GO:0040008 GO:0042221 GO:0043170 GO:0043207 GO:0043412 GO:0043680 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044426 GO:0044462 GO:0044464 GO:0044703 GO:0044706 GO:0045926 GO:0046777 GO:0048364 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051703 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Malectin_like Pkinase_Tyr

Protein Analysis

225

Amino Acids

24.63

Weight (kDa)

8.66

Isoelectric Point (pI)

49.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	94 - 224	2.8e-18	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	95 - 224	1.5e-18	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010855)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g12270
malus_domestica	MD03G1063500.v1.1
pyrus_communis	pycom03g05080
rosa_chinensis	RchiOBHm_Chr4g0400301 RchiOBHm_Chr4g0400381 RchiOBHm_Chr7g0185301
rosa_laevigata	RLG00000002261 RLG00000004924 RLG00000021536
rosa_multiflora	Rmu_sc0001873.1_g000008 Rmu_sc0005425.1_g000001 Rmu_sc0012343.1_g000001 Rmu_sc0023720.1_g000001
rosa_roxburghii	Rroxscaffold_3G00269070
rosa_rugosa	Rorug02G0514500 Rorug02G0514900 Rorug06G0467600
rosa_samantha	Rh7AG074900 Rh7CG073400 Rh7DG072900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	335
AccB1I	GGYRCC	1 cut(s)	620
AccII	CGCG	2 cut(s)	390, 595
AciI	CCGC	5 cut(s)	41, 212, 255, 297, 388
AclWI	GGATC	1 cut(s)	208
AcsI	RAATTY	1 cut(s)	576
AcyI	GRCGYC	1 cut(s)	621
AfaI	GTAC	3 cut(s)	28, 314, 504
AfiI	CCNNNNNNNGG	1 cut(s)	171
AflII	CTTAAG	1 cut(s)	545
AgsI	TTSAA	2 cut(s)	271, 397
AloI	GAACNNNNNNTCC	2 cut(s)	555, 587
AluBI	AGCT	2 cut(s)	7, 412
AluI	AGCT	2 cut(s)	7, 412
Alw21I	GWGCWC	1 cut(s)	659
Alw26I	GTCTC	1 cut(s)	358
AlwI	GGATC	1 cut(s)	208
AoxI	GGCC	1 cut(s)	384
ApaI	GGGCCC	1 cut(s)	388
ApeKI	GCWGC	1 cut(s)	507
ApoI	RAATTY	1 cut(s)	576
ArsI	GACNNNNNNTTYG	2 cut(s)	561, 593
AspA2I	CCTAGG	1 cut(s)	109
AspLEI	GCGC	2 cut(s)	590, 623
AspS9I	GGNCC	2 cut(s)	384, 385
AsuC2I	CCSGG	1 cut(s)	198
AsuHPI	GGTGA	3 cut(s)	7, 195, 530
AsuNHI	GCTAGC	1 cut(s)	7
AvrII	CCTAGG	1 cut(s)	109
BaeGI	GKGCMC	1 cut(s)	388
BaeI	ACNNNNGTAYC	2 cut(s)	267, 300
BanI	GGYRCC	1 cut(s)	620
BanII	GRGCYC	1 cut(s)	388
BauI	CACGAG	1 cut(s)	138
BbsI	GAAGAC	1 cut(s)	182
Bbv12I	GWGCWC	1 cut(s)	659
BbvI	GCAGC	1 cut(s)	519
BccI	CCATC	3 cut(s)	20, 68, 531
BciVI	GTATCC	1 cut(s)	31
BcnI	CCSGG	1 cut(s)	198
BcoDI	GTCTC	1 cut(s)	358
BfaI	CTAG	2 cut(s)	8, 110
BfoI	RGCGCY	1 cut(s)	624
BfrI	CTTAAG	1 cut(s)	545
BfuI	GTATCC	1 cut(s)	31
BisI	GCNGC	2 cut(s)	255, 508
BlnI	CCTAGG	1 cut(s)	109
BlsI	GCNGC	2 cut(s)	256, 509
BmcAI	AGTACT	1 cut(s)	28
Bme1390I	CCNGG	1 cut(s)	198
BmgT120I	GGNCC	2 cut(s)	384, 385
BmiI	GGNNCC	4 cut(s)	385, 386, 622, 631
BmrFI	CCNGG	1 cut(s)	198
BmtI	GCTAGC	1 cut(s)	11
BoxI	GACNNNNGTC	1 cut(s)	370
BpiI	GAAGAC	1 cut(s)	182
BpuMI	CCSGG	1 cut(s)	198
BsaHI	GRCGYC	1 cut(s)	621
BsaI	GGTCTC	1 cut(s)	358
BsaJI	CCNNGG	3 cut(s)	109, 169, 557
BsaXI	ACNNNNNCTCC	4 cut(s)	69, 99, 555, 585
Bsc4I	CCNNNNNNNGG	1 cut(s)	171
Bse1I	ACTGG	3 cut(s)	24, 151, 243
Bse3DI	GCAATG	1 cut(s)	313
BseDI	CCNNGG	3 cut(s)	109, 169, 557
BseLI	CCNNNNNNNGG	1 cut(s)	171
BseMI	GCAATG	1 cut(s)	313
BseMII	CTCAG	2 cut(s)	234, 477
BseNI	ACTGG	3 cut(s)	24, 151, 243
BseRI	GAGGAG	1 cut(s)	95
BseSI	GKGCMC	1 cut(s)	388
BseXI	GCAGC	1 cut(s)	519
Bsh1236I	CGCG	2 cut(s)	390, 595
BshFI	GGCC	1 cut(s)	386
BshNI	GGYRCC	1 cut(s)	620
BsiHKAI	GWGCWC	1 cut(s)	659
BsiSI	CCGG	1 cut(s)	197
BslI	CCNNNNNNNGG	1 cut(s)	171
BsmAI	GTCTC	1 cut(s)	358
BsnI	GGCC	1 cut(s)	386
Bso31I	GGTCTC	1 cut(s)	358
Bsp120I	GGGCCC	1 cut(s)	384
Bsp1286I	GDGCHC	2 cut(s)	388, 659
Bsp1407I	TGTACA	1 cut(s)	312
Bsp143I	GATC	2 cut(s)	200, 480
Bsp19I	CCATGG	1 cut(s)	169
BspACI	CCGC	5 cut(s)	41, 212, 255, 297, 388
BspANI	GGCC	1 cut(s)	386
BspCNI	CTCAG	2 cut(s)	235, 476
BspFNI	CGCG	2 cut(s)	390, 595
BspLI	GGNNCC	4 cut(s)	385, 386, 622, 631
BspOI	GCTAGC	1 cut(s)	11
BspPI	GGATC	1 cut(s)	208
BspT107I	GGYRCC	1 cut(s)	620
BspTI	CTTAAG	1 cut(s)	545
BspTNI	GGTCTC	1 cut(s)	358
BsrDI	GCAATG	1 cut(s)	313
BsrGI	TGTACA	1 cut(s)	312
BsrI	ACTGG	3 cut(s)	24, 151, 243
BssECI	CCNNGG	3 cut(s)	109, 169, 557
BssMI	GATC	2 cut(s)	200, 480
BssNI	GRCGYC	1 cut(s)	621
BssSI	CACGAG	1 cut(s)	138
BssT1I	CCWWGG	3 cut(s)	109, 169, 557
Bst2BI	CACGAG	1 cut(s)	138
Bst4CI	ACNGT	5 cut(s)	19, 332, 360, 617, 644
Bst6I	CTCTTC	1 cut(s)	558
BstACI	GRCGYC	1 cut(s)	621
BstAFI	CTTAAG	1 cut(s)	545
BstAUI	TGTACA	1 cut(s)	312
BstC8I	GCNNGC	2 cut(s)	9, 388
BstDEI	CTNAG	2 cut(s)	243, 463
BstDSI	CCRYGG	1 cut(s)	169
BstEII	GGTNACC	2 cut(s)	518, 539
BstFNI	CGCG	2 cut(s)	390, 595
BstH2I	RGCGCY	1 cut(s)	624
BstHHI	GCGC	2 cut(s)	590, 623
BstKTI	GATC	2 cut(s)	203, 483
BstMAI	GTCTC	1 cut(s)	358
BstMBI	GATC	2 cut(s)	200, 480
BstMWI	GCNNNNNNNGC	3 cut(s)	303, 601, 627
BstPAI	GACNNNNGTC	1 cut(s)	370
BstPI	GGTNACC	2 cut(s)	518, 539
BstSCI	CCNGG	1 cut(s)	196
BstSLI	GKGCMC	1 cut(s)	388
BstUI	CGCG	2 cut(s)	390, 595
BstV1I	GCAGC	1 cut(s)	519
BstV2I	GAAGAC	1 cut(s)	182
BsuI	GTATCC	1 cut(s)	31
BsuRI	GGCC	1 cut(s)	386
BtgI	CCRYGG	1 cut(s)	169
BtsI	GCAGTG	1 cut(s)	430
BtsIMutI	CAGTG	4 cut(s)	236, 430, 622, 640
Cac8I	GCNNGC	2 cut(s)	9, 388
CfoI	GCGC	2 cut(s)	590, 623
Cfr13I	GGNCC	2 cut(s)	384, 385
Csp6I	GTAC	3 cut(s)	27, 313, 503
CviAII	CATG	2 cut(s)	170, 499
CviJI	RGCY	8 cut(s)	7, 11, 242, 254, 386, 412, 550, 630
CviKI_1	RGCY	8 cut(s)	7, 11, 242, 254, 386, 412, 550, 630
CviQI	GTAC	3 cut(s)	27, 313, 503
DdeI	CTNAG	2 cut(s)	243, 463
DinI	GGCGCC	1 cut(s)	622
DpnI	GATC	2 cut(s)	202, 482
DpnII	GATC	2 cut(s)	200, 480
DrdI	GACNNNNNNGTC	1 cut(s)	335
DseDI	GACNNNNNNGTC	1 cut(s)	335
Eam1104I	CTCTTC	1 cut(s)	558
EarI	CTCTTC	1 cut(s)	558
Eco130I	CCWWGG	3 cut(s)	109, 169, 557
Eco24I	GRGCYC	1 cut(s)	388
Eco31I	GGTCTC	1 cut(s)	358
Eco91I	GGTNACC	2 cut(s)	518, 539
EcoO109I	RGGNCCY	1 cut(s)	384
EcoO65I	GGTNACC	2 cut(s)	518, 539
EcoT14I	CCWWGG	3 cut(s)	109, 169, 557
EcoT38I	GRGCYC	1 cut(s)	388
EgeI	GGCGCC	1 cut(s)	622
EheI	GGCGCC	1 cut(s)	622
ErhI	CCWWGG	3 cut(s)	109, 169, 557
FaeI	CATG	2 cut(s)	173, 502
FaiI	YATR	6 cut(s)	89, 128, 171, 219, 221, 500
FalI	AAGNNNNNCTT	2 cut(s)	467, 499
FatI	CATG	2 cut(s)	169, 498
FauI	CCCGC	2 cut(s)	290, 395
Fnu4HI	GCNGC	2 cut(s)	255, 508
FriOI	GRGCYC	1 cut(s)	388
Fsp4HI	GCNGC	2 cut(s)	255, 508
FspBI	CTAG	2 cut(s)	8, 110
GlaI	GCGC	2 cut(s)	589, 622
GluI	GCNGC	2 cut(s)	255, 508
HaeII	RGCGCY	1 cut(s)	624
HaeIII	GGCC	1 cut(s)	386
HapII	CCGG	1 cut(s)	197
HhaI	GCGC	2 cut(s)	590, 623
Hin1I	GRCGYC	1 cut(s)	621
Hin1II	CATG	2 cut(s)	173, 502
Hin6I	GCGC	2 cut(s)	588, 621
HinP1I	GCGC	2 cut(s)	588, 621
HincII	GTYRAC	1 cut(s)	186
HindII	GTYRAC	1 cut(s)	186
HinfI	GANTC	5 cut(s)	114, 161, 193, 371, 570
HpaII	CCGG	1 cut(s)	197
HphI	GGTGA	3 cut(s)	7, 195, 530
Hpy166II	GTNNAC	3 cut(s)	186, 313, 490
Hpy188I	TCNGA	1 cut(s)	466
Hpy188III	TCNNGA	3 cut(s)	51, 138, 397
Hpy8I	GTNNAC	3 cut(s)	186, 313, 490
HpyAV	CCTTC	2 cut(s)	166, 620
HpyCH4III	ACNGT	5 cut(s)	19, 332, 360, 617, 644
HpyCH4V	TGCA	1 cut(s)	604
HpyF10VI	GCNNNNNNNGC	3 cut(s)	303, 601, 627
HpyF3I	CTNAG	2 cut(s)	243, 463
Hsp92I	GRCGYC	1 cut(s)	621
Hsp92II	CATG	2 cut(s)	173, 502
HspAI	GCGC	2 cut(s)	588, 621
KasI	GGCGCC	1 cut(s)	620
Kzo9I	GATC	2 cut(s)	200, 480
LmnI	GCTCC	1 cut(s)	635
LpnPI	CCDG	6 cut(s)	37, 164, 210, 224, 365, 381
Lsp1109I	GCAGC	1 cut(s)	519
MaeI	CTAG	2 cut(s)	8, 110
MaeIII	GTNAC	5 cut(s)	227, 337, 455, 518, 539
MalI	GATC	2 cut(s)	202, 482
MboI	GATC	2 cut(s)	200, 480
MboII	GAAGA	3 cut(s)	109, 187, 545
MhlI	GDGCHC	2 cut(s)	388, 659
MluCI	AATT	2 cut(s)	54, 576
Mly113I	GGCGCC	1 cut(s)	621
MlyI	GAGTC	3 cut(s)	155, 380, 564
MmeI	TCCRAC	1 cut(s)	189
MnlI	CCTC	5 cut(s)	74, 116, 134, 561, 590
MseI	TTAA	3 cut(s)	249, 546, 651
MslI	CAYNNNNRTG	1 cut(s)	645
MspCI	CTTAAG	1 cut(s)	545
MspI	CCGG	1 cut(s)	197
MspR9I	CCNGG	1 cut(s)	198
MvnI	CGCG	2 cut(s)	390, 595
MwoI	GCNNNNNNNGC	3 cut(s)	303, 601, 627
NarI	GGCGCC	1 cut(s)	621
NciI	CCSGG	1 cut(s)	198
NcoI	CCATGG	1 cut(s)	169
NdeII	GATC	2 cut(s)	200, 480
NheI	GCTAGC	1 cut(s)	7
NlaIII	CATG	2 cut(s)	173, 502
NlaIV	GGNNCC	4 cut(s)	385, 386, 622, 631
NmuCI	GTSAC	2 cut(s)	337, 518
PfeI	GAWTC	2 cut(s)	114, 193
PflFI	GACNNNGTC	1 cut(s)	181
PfoI	TCCNGGA	1 cut(s)	196
PkrI	GCNGC	2 cut(s)	256, 509
PleI	GAGTC	3 cut(s)	155, 379, 564
PluTI	GGCGCC	1 cut(s)	624
PpsI	GAGTC	3 cut(s)	155, 379, 564
PshAI	GACNNNNGTC	1 cut(s)	370
PspEI	GGTNACC	2 cut(s)	518, 539
PspN4I	GGNNCC	4 cut(s)	385, 386, 622, 631
PspOMI	GGGCCC	1 cut(s)	384
PspPI	GGNCC	2 cut(s)	384, 385
PsyI	GACNNNGTC	1 cut(s)	181
RsaI	GTAC	3 cut(s)	28, 314, 504
RsaNI	GTAC	3 cut(s)	27, 313, 503
RseI	CAYNNNNRTG	1 cut(s)	645
SaqAI	TTAA	3 cut(s)	249, 546, 651
SatI	GCNGC	2 cut(s)	255, 508
Sau3AI	GATC	2 cut(s)	200, 480
Sau96I	GGNCC	2 cut(s)	384, 385
ScaI	AGTACT	1 cut(s)	28
SchI	GAGTC	3 cut(s)	155, 380, 564
ScrFI	CCNGG	1 cut(s)	198
SduI	GDGCHC	2 cut(s)	388, 659
SetI	ASST	5 cut(s)	9, 208, 414, 546, 612
SfoI	GGCGCC	1 cut(s)	622
SmiMI	CAYNNNNRTG	1 cut(s)	645
SmlI	CTYRAG	1 cut(s)	545
SmoI	CTYRAG	1 cut(s)	545
Sse9I	AATT	2 cut(s)	54, 576
SsiI	CCGC	5 cut(s)	41, 212, 255, 297, 388
SspDI	GGCGCC	1 cut(s)	620
SspI	AATATT	1 cut(s)	664
SspMI	CTAG	2 cut(s)	8, 110
StyD4I	CCNGG	1 cut(s)	196
StyI	CCWWGG	3 cut(s)	109, 169, 557
TaaI	ACNGT	5 cut(s)	19, 332, 360, 617, 644
TaqI	TCGA	2 cut(s)	159, 408
TasI	AATT	2 cut(s)	54, 576
TatI	WGTACW	2 cut(s)	26, 312
TauI	GCSGC	1 cut(s)	257
TfiI	GAWTC	2 cut(s)	114, 193
Tru1I	TTAA	3 cut(s)	249, 546, 651
Tru9I	TTAA	3 cut(s)	249, 546, 651
TscAI	CASTG	4 cut(s)	243, 437, 622, 647
TseFI	GTSAC	2 cut(s)	337, 518
TseI	GCWGC	1 cut(s)	507
Tsp45I	GTSAC	2 cut(s)	337, 518
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	416
TspRI	CASTG	4 cut(s)	243, 437, 622, 647
Tth111I	GACNNNGTC	1 cut(s)	181
Vha464I	CTTAAG	1 cut(s)	545
XapI	RAATTY	1 cut(s)	576
XcmI	CCANNNNNNNNNTGG	1 cut(s)	581
XmaJI	CCTAGG	1 cut(s)	109
XspI	CTAG	2 cut(s)	8, 110
ZrmI	AGTACT	1 cut(s)	28

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.