Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0010855

Physical Location & Seq

Genomic Coordinates Forward (+)

76247808 .. 76248235

Gene Structure 428 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021536

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGAAGTCTACCATGACCCCTGGATCACCTTTACCTCCTTATTTGTGTCATTACTTTTCACTGGCAGAGATCAAGGTTGCCACCAAAAACTTCAATAATACTTCCATTATTGGAGGTGGAGGATTTGACAACGTGTACAAAGGATGCATTGATGGTGGAGCCATTCCAGTTGCAATCAAACGACTAACACCAGAGTCATCCCAGGGTGAAATGATCTTGGTGTATGACTACATGGCCCGCAGAACCCTCCGTGACCATCTCTACCACACCGATAACCAACCTCTTTCCTGGAAGCAACAGATCCAGATTTGCATCGGCACAACTCGAGGGTTGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009723 GO:0009725 GO:0009741 GO:0009787 GO:0009788 GO:0009791 GO:0009856 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010118 GO:0010483 GO:0010646 GO:0010648 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0022622 GO:0023051 GO:0023057 GO:0030054 GO:0030308 GO:0030312 GO:0032501 GO:0032502 GO:0033993 GO:0036211 GO:0040008 GO:0042221 GO:0043170 GO:0043207 GO:0043412 GO:0043680 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044426 GO:0044462 GO:0044464 GO:0044703 GO:0044706 GO:0045926 GO:0046777 GO:0048364 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051703 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Malectin_like Pkinase_Tyr

Protein Analysis

113

Amino Acids

12.45

Weight (kDa)

8.84

Isoelectric Point (pI)

56.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010855)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g12270
malus_domestica	MD03G1063500.v1.1
pyrus_communis	pycom03g05080
rosa_chinensis	RchiOBHm_Chr4g0400301 RchiOBHm_Chr4g0400381 RchiOBHm_Chr7g0185301
rosa_laevigata	RLG00000002261 RLG00000004924 RLG00000021536
rosa_multiflora	Rmu_sc0001873.1_g000008 Rmu_sc0005425.1_g000001 Rmu_sc0012343.1_g000001 Rmu_sc0023720.1_g000001
rosa_roxburghii	Rroxscaffold_3G00269070
rosa_rugosa	Rorug02G0514500 Rorug02G0514900 Rorug06G0467600
rosa_samantha	Rh7AG074900 Rh7CG073400 Rh7DG072900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	8
AciI	CCGC	1 cut(s)	238
AclWI	GGATC	2 cut(s)	31, 295
AfaI	GTAC	1 cut(s)	137
AflIII	ACRYGT	1 cut(s)	132
AgsI	TTSAA	1 cut(s)	94
AjnI	CCWGG	3 cut(s)	19, 201, 287
AlwI	GGATC	2 cut(s)	31, 295
Ama87I	CYCGRG	1 cut(s)	324
AoxI	GGCC	1 cut(s)	234
AspS9I	GGNCC	1 cut(s)	235
AsuHPI	GGTGA	2 cut(s)	18, 218
AvaI	CYCGRG	1 cut(s)	324
BccI	CCATC	2 cut(s)	146, 264
BciT130I	CCWGG	3 cut(s)	21, 203, 289
Bme1390I	CCNGG	3 cut(s)	21, 203, 289
BmeT110I	CYCGRG	1 cut(s)	324
BmgT120I	GGNCC	1 cut(s)	235
BmiI	GGNNCC	1 cut(s)	160
BmrFI	CCNGG	3 cut(s)	21, 203, 289
BmsI	GCATC	2 cut(s)	134, 321
BsaBI	GATNNNNATC	1 cut(s)	311
BsaJI	CCNNGG	3 cut(s)	19, 201, 202
Bse1I	ACTGG	2 cut(s)	66, 167
Bse8I	GATNNNNATC	1 cut(s)	311
BseBI	CCWGG	3 cut(s)	21, 203, 289
BseDI	CCNNGG	3 cut(s)	19, 201, 202
BseGI	GGATG	2 cut(s)	149, 197
BseJI	GATNNNNATC	1 cut(s)	311
BseNI	ACTGG	2 cut(s)	66, 167
BshFI	GGCC	1 cut(s)	236
BsiHKCI	CYCGRG	1 cut(s)	324
BsnI	GGCC	1 cut(s)	236
BsoBI	CYCGRG	1 cut(s)	324
Bsp1407I	TGTACA	1 cut(s)	135
Bsp143I	GATC	4 cut(s)	23, 69, 213, 300
BspACI	CCGC	1 cut(s)	238
BspANI	GGCC	1 cut(s)	236
BspLI	GGNNCC	1 cut(s)	160
BspPI	GGATC	2 cut(s)	31, 295
BsrGI	TGTACA	1 cut(s)	135
BsrI	ACTGG	2 cut(s)	66, 167
BssECI	CCNNGG	3 cut(s)	19, 201, 202
BssMI	GATC	4 cut(s)	23, 69, 213, 300
Bst2UI	CCWGG	3 cut(s)	21, 203, 289
BstAUI	TGTACA	1 cut(s)	135
BstC8I	GCNNGC	1 cut(s)	238
BstF5I	GGATG	2 cut(s)	149, 197
BstKTI	GATC	4 cut(s)	26, 72, 216, 303
BstMBI	GATC	4 cut(s)	23, 69, 213, 300
BstNI	CCWGG	3 cut(s)	21, 203, 289
BstSCI	CCNGG	3 cut(s)	19, 201, 287
BstX2I	RGATCY	1 cut(s)	300
BstYI	RGATCY	1 cut(s)	300
BsuRI	GGCC	1 cut(s)	236
BtsCI	GGATG	2 cut(s)	149, 197
BtsIMutI	CAGTG	1 cut(s)	59
Cac8I	GCNNGC	1 cut(s)	238
Cfr13I	GGNCC	1 cut(s)	235
Csp6I	GTAC	1 cut(s)	136
CviAII	CATG	2 cut(s)	13, 232
CviJI	RGCY	2 cut(s)	161, 236
CviKI_1	RGCY	2 cut(s)	161, 236
CviQI	GTAC	1 cut(s)	136
DpnI	GATC	4 cut(s)	25, 71, 215, 302
DpnII	GATC	4 cut(s)	23, 69, 213, 300
Eco88I	CYCGRG	1 cut(s)	324
EcoRII	CCWGG	3 cut(s)	19, 201, 287
EcoT22I	ATGCAT	1 cut(s)	149
FaeI	CATG	2 cut(s)	16, 235
FaiI	YATR	3 cut(s)	14, 225, 233
FatI	CATG	2 cut(s)	12, 231
FauI	CCCGC	1 cut(s)	245
FblI	GTMKAC	1 cut(s)	8
FokI	GGATG	2 cut(s)	156, 184
HaeIII	GGCC	1 cut(s)	236
Hin1II	CATG	2 cut(s)	16, 235
HinfI	GANTC	1 cut(s)	194
HphI	GGTGA	2 cut(s)	18, 218
Hpy166II	GTNNAC	2 cut(s)	9, 136
Hpy188III	TCNNGA	1 cut(s)	304
Hpy8I	GTNNAC	2 cut(s)	9, 136
HpyCH4IV	ACGT	1 cut(s)	132
HpyCH4V	TGCA	4 cut(s)	147, 173, 312, 334
HpySE526I	ACGT	1 cut(s)	132
Hsp92II	CATG	2 cut(s)	16, 235
Kzo9I	GATC	4 cut(s)	23, 69, 213, 300
LmnI	GCTCC	1 cut(s)	158
LweI	GCATC	2 cut(s)	134, 321
MaeII	ACGT	1 cut(s)	132
MaeIII	GTNAC	1 cut(s)	251
MalI	GATC	4 cut(s)	25, 71, 215, 302
MboI	GATC	4 cut(s)	23, 69, 213, 300
MflI	RGATCY	1 cut(s)	300
MlyI	GAGTC	1 cut(s)	203
MnlI	CCTC	6 cut(s)	45, 107, 113, 257, 291, 320
Mph1103I	ATGCAT	1 cut(s)	149
MspR9I	CCNGG	3 cut(s)	21, 203, 289
MvaI	CCWGG	3 cut(s)	21, 203, 289
NdeII	GATC	4 cut(s)	23, 69, 213, 300
NlaIII	CATG	2 cut(s)	16, 235
NlaIV	GGNNCC	1 cut(s)	160
NmuCI	GTSAC	1 cut(s)	251
NsiI	ATGCAT	1 cut(s)	149
PaeR7I	CTCGAG	1 cut(s)	324
PasI	CCCWGGG	1 cut(s)	202
PfoI	TCCNGGA	1 cut(s)	287
PleI	GAGTC	1 cut(s)	202
PpsI	GAGTC	1 cut(s)	202
Psp6I	CCWGG	3 cut(s)	19, 201, 287
PspGI	CCWGG	3 cut(s)	19, 201, 287
PspN4I	GGNNCC	1 cut(s)	160
PspPI	GGNCC	1 cut(s)	235
PspXI	VCTCGAGB	1 cut(s)	324
PsuI	RGATCY	1 cut(s)	300
RsaI	GTAC	1 cut(s)	137
RsaNI	GTAC	1 cut(s)	136
Sau3AI	GATC	4 cut(s)	23, 69, 213, 300
Sau96I	GGNCC	1 cut(s)	235
SchI	GAGTC	1 cut(s)	203
ScrFI	CCNGG	3 cut(s)	21, 203, 289
SetI	ASST	6 cut(s)	31, 37, 78, 118, 135, 283
SfaNI	GCATC	2 cut(s)	134, 321
Sfr274I	CTCGAG	1 cut(s)	324
SlaI	CTCGAG	1 cut(s)	324
SmlI	CTYRAG	1 cut(s)	324
SmoI	CTYRAG	1 cut(s)	324
SsiI	CCGC	1 cut(s)	238
StyD4I	CCNGG	3 cut(s)	19, 201, 287
TaiI	ACGT	1 cut(s)	135
TaqI	TCGA	1 cut(s)	325
TatI	WGTACW	1 cut(s)	135
TscAI	CASTG	1 cut(s)	66
TseFI	GTSAC	1 cut(s)	251
Tsp45I	GTSAC	1 cut(s)	251
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	239
TspRI	CASTG	1 cut(s)	66
XhoI	CTCGAG	1 cut(s)	324
XmiI	GTMKAC	1 cut(s)	8
Zsp2I	ATGCAT	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.