Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0010855

Physical Location & Seq

Genomic Coordinates Reverse (-)

30846848 .. 30847243

Gene Structure 396 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002261

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGAAGTCTACCATGACACCTGGATCACCTTTATTACCTTATTTGTGTCGTTACTTTTCACTAGCAGAGATCAAGGCTGCCACCAAAAACTTTAATGATACTTTCATTATTGGAGCTGGAGGATTTGCCAATGTCTACAAAGGATGCATCGATGGTGGGGTCACTCCAGTTGCAATCAAAAGACTGAAACCAGAGTCATCCCATGGTGCCCACGAGTTTAAAATGGAAATTGAGATGCTCTCCCAACTCTGTCATATACATTTGGTTTCGCTAATTGGATATTGTGTTAATAAAGGTGAGATGATCTTGGTGTATGATTACATGGCCCGCGGAACCCTCTGTGACCATCTCTACCACATCGATAAACCACCTCTTCTCTGGGAGCAACAACTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009723 GO:0009725 GO:0009741 GO:0009787 GO:0009788 GO:0009791 GO:0009856 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010118 GO:0010483 GO:0010646 GO:0010648 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0022622 GO:0023051 GO:0023057 GO:0030054 GO:0030308 GO:0030312 GO:0032501 GO:0032502 GO:0033993 GO:0036211 GO:0040008 GO:0042221 GO:0043170 GO:0043207 GO:0043412 GO:0043680 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044426 GO:0044462 GO:0044464 GO:0044703 GO:0044706 GO:0045926 GO:0046777 GO:0048364 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051703 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Malectin_like Pkinase_Tyr

Protein Analysis

132

Amino Acids

14.67

Weight (kDa)

6.99

Isoelectric Point (pI)

47.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	36 - 117	9.9e-12	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	37 - 119	1.6e-15	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010855)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g12270
malus_domestica	MD03G1063500.v1.1
pyrus_communis	pycom03g05080
rosa_chinensis	RchiOBHm_Chr4g0400301 RchiOBHm_Chr4g0400381 RchiOBHm_Chr7g0185301
rosa_laevigata	RLG00000002261 RLG00000004924 RLG00000021536
rosa_multiflora	Rmu_sc0001873.1_g000008 Rmu_sc0005425.1_g000001 Rmu_sc0012343.1_g000001 Rmu_sc0023720.1_g000001
rosa_roxburghii	Rroxscaffold_3G00269070
rosa_rugosa	Rorug02G0514500 Rorug02G0514900 Rorug06G0467600
rosa_samantha	Rh7AG074900 Rh7CG073400 Rh7DG072900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	206
AccI	GTMKAC	2 cut(s)	8, 135
AccII	CGCG	1 cut(s)	330
AciI	CCGC	2 cut(s)	328, 330
AclWI	GGATC	1 cut(s)	31
AjnI	CCWGG	1 cut(s)	19
AluBI	AGCT	1 cut(s)	116
AluI	AGCT	1 cut(s)	116
AlwI	GGATC	1 cut(s)	31
AoxI	GGCC	1 cut(s)	324
ApeKI	GCWGC	1 cut(s)	77
AspS9I	GGNCC	1 cut(s)	325
AsuHPI	GGTGA	2 cut(s)	18, 308
BaeGI	GKGCMC	1 cut(s)	211
BanI	GGYRCC	1 cut(s)	206
BauI	CACGAG	1 cut(s)	212
BbvI	GCAGC	1 cut(s)	64
BccI	CCATC	2 cut(s)	146, 354
BciT130I	CCWGG	1 cut(s)	21
BfaI	CTAG	2 cut(s)	62, 394
BisI	GCNGC	1 cut(s)	78
BlsI	GCNGC	1 cut(s)	79
Bme1390I	CCNGG	1 cut(s)	21
BmgT120I	GGNCC	1 cut(s)	325
BmiI	GGNNCC	2 cut(s)	208, 334
BmrFI	CCNGG	1 cut(s)	21
BmsI	GCATC	3 cut(s)	134, 156, 225
BplI	GAGNNNNNCTC	2 cut(s)	224, 256
BpmI	CTGGAG	2 cut(s)	138, 150
Bsa29I	ATCGAT	2 cut(s)	150, 360
BsaJI	CCNNGG	2 cut(s)	202, 328
Bse1I	ACTGG	1 cut(s)	167
BseBI	CCWGG	1 cut(s)	21
BseCI	ATCGAT	2 cut(s)	150, 360
BseDI	CCNNGG	2 cut(s)	202, 328
BseGI	GGATG	2 cut(s)	149, 197
BseNI	ACTGG	1 cut(s)	167
BseSI	GKGCMC	1 cut(s)	211
BseXI	GCAGC	1 cut(s)	64
Bsh1236I	CGCG	1 cut(s)	330
BshFI	GGCC	1 cut(s)	326
BshNI	GGYRCC	1 cut(s)	206
BshVI	ATCGAT	2 cut(s)	150, 360
BsnI	GGCC	1 cut(s)	326
Bsp1286I	GDGCHC	1 cut(s)	211
Bsp143I	GATC	3 cut(s)	23, 69, 303
Bsp19I	CCATGG	1 cut(s)	202
BspACI	CCGC	2 cut(s)	328, 330
BspANI	GGCC	1 cut(s)	326
BspDI	ATCGAT	2 cut(s)	150, 360
BspFNI	CGCG	1 cut(s)	330
BspLI	GGNNCC	2 cut(s)	208, 334
BspPI	GGATC	1 cut(s)	31
BspT107I	GGYRCC	1 cut(s)	206
BsrI	ACTGG	1 cut(s)	167
BssECI	CCNNGG	2 cut(s)	202, 328
BssMI	GATC	3 cut(s)	23, 69, 303
BssSI	CACGAG	1 cut(s)	212
BssT1I	CCWWGG	1 cut(s)	202
Bst2BI	CACGAG	1 cut(s)	212
Bst2UI	CCWGG	1 cut(s)	21
Bst6I	CTCTTC	1 cut(s)	378
BstC8I	GCNNGC	1 cut(s)	328
BstDSI	CCRYGG	2 cut(s)	202, 328
BstF5I	GGATG	2 cut(s)	149, 197
BstFNI	CGCG	1 cut(s)	330
BstKTI	GATC	3 cut(s)	26, 72, 306
BstMBI	GATC	3 cut(s)	23, 69, 303
BstNI	CCWGG	1 cut(s)	21
BstSCI	CCNGG	1 cut(s)	19
BstSLI	GKGCMC	1 cut(s)	211
BstUI	CGCG	1 cut(s)	330
BstV1I	GCAGC	1 cut(s)	64
Bsu15I	ATCGAT	2 cut(s)	150, 360
BsuRI	GGCC	1 cut(s)	326
BsuTUI	ATCGAT	2 cut(s)	150, 360
BtgI	CCRYGG	2 cut(s)	202, 328
BtsCI	GGATG	2 cut(s)	149, 197
Cac8I	GCNNGC	1 cut(s)	328
Cfr13I	GGNCC	1 cut(s)	325
Cfr42I	CCGCGG	1 cut(s)	331
ClaI	ATCGAT	2 cut(s)	150, 360
CviAII	CATG	3 cut(s)	13, 203, 322
CviJI	RGCY	3 cut(s)	77, 116, 326
CviKI_1	RGCY	3 cut(s)	77, 116, 326
DpnI	GATC	3 cut(s)	25, 71, 305
DpnII	GATC	3 cut(s)	23, 69, 303
DraI	TTTAAA	1 cut(s)	220
Eam1104I	CTCTTC	1 cut(s)	378
EarI	CTCTTC	1 cut(s)	378
Eco130I	CCWWGG	1 cut(s)	202
EcoRII	CCWGG	1 cut(s)	19
EcoT14I	CCWWGG	1 cut(s)	202
EcoT22I	ATGCAT	1 cut(s)	149
ErhI	CCWWGG	1 cut(s)	202
FaeI	CATG	3 cut(s)	16, 206, 325
FaiI	YATR	6 cut(s)	14, 204, 255, 257, 315, 323
FatI	CATG	3 cut(s)	12, 202, 321
FauI	CCCGC	1 cut(s)	335
FblI	GTMKAC	2 cut(s)	8, 135
Fnu4HI	GCNGC	1 cut(s)	78
FokI	GGATG	2 cut(s)	156, 184
Fsp4HI	GCNGC	1 cut(s)	78
FspBI	CTAG	2 cut(s)	62, 394
GluI	GCNGC	1 cut(s)	78
GsuI	CTGGAG	2 cut(s)	138, 150
HaeIII	GGCC	1 cut(s)	326
Hin1II	CATG	3 cut(s)	16, 206, 325
HinfI	GANTC	1 cut(s)	194
HphI	GGTGA	2 cut(s)	18, 308
Hpy166II	GTNNAC	2 cut(s)	9, 136
Hpy8I	GTNNAC	2 cut(s)	9, 136
HpyCH4V	TGCA	2 cut(s)	147, 173
Hsp92II	CATG	3 cut(s)	16, 206, 325
KspI	CCGCGG	1 cut(s)	331
Kzo9I	GATC	3 cut(s)	23, 69, 303
LmnI	GCTCC	2 cut(s)	113, 382
LpnPI	CCDG	6 cut(s)	6, 33, 102, 180, 204, 364
Lsp1109I	GCAGC	1 cut(s)	64
LweI	GCATC	3 cut(s)	134, 156, 225
MaeI	CTAG	2 cut(s)	62, 394
MaeIII	GTNAC	3 cut(s)	50, 160, 341
MalI	GATC	3 cut(s)	25, 71, 305
MboI	GATC	3 cut(s)	23, 69, 303
MboII	GAAGA	1 cut(s)	365
MhlI	GDGCHC	1 cut(s)	211
MluCI	AATT	2 cut(s)	228, 273
MlyI	GAGTC	1 cut(s)	203
MnlI	CCTC	3 cut(s)	113, 347, 381
Mph1103I	ATGCAT	1 cut(s)	149
MseI	TTAA	3 cut(s)	93, 219, 288
MspA1I	CMGCKG	1 cut(s)	330
MspR9I	CCNGG	1 cut(s)	21
MvaI	CCWGG	1 cut(s)	21
MvnI	CGCG	1 cut(s)	330
NcoI	CCATGG	1 cut(s)	202
NdeII	GATC	3 cut(s)	23, 69, 303
NlaIII	CATG	3 cut(s)	16, 206, 325
NlaIV	GGNNCC	2 cut(s)	208, 334
NmuCI	GTSAC	2 cut(s)	160, 341
NsiI	ATGCAT	1 cut(s)	149
PkrI	GCNGC	1 cut(s)	79
PleI	GAGTC	1 cut(s)	202
PpsI	GAGTC	1 cut(s)	202
Psp6I	CCWGG	1 cut(s)	19
PspGI	CCWGG	1 cut(s)	19
PspN4I	GGNNCC	2 cut(s)	208, 334
PspPI	GGNCC	1 cut(s)	325
SacII	CCGCGG	1 cut(s)	331
SaqAI	TTAA	3 cut(s)	93, 219, 288
SatI	GCNGC	1 cut(s)	78
Sau3AI	GATC	3 cut(s)	23, 69, 303
Sau96I	GGNCC	1 cut(s)	325
SchI	GAGTC	1 cut(s)	203
ScrFI	CCNGG	1 cut(s)	21
SduI	GDGCHC	1 cut(s)	211
SetI	ASST	6 cut(s)	22, 31, 40, 118, 298, 373
SfaNI	GCATC	3 cut(s)	134, 156, 225
Sfr303I	CCGCGG	1 cut(s)	331
SgrBI	CCGCGG	1 cut(s)	331
Sse9I	AATT	2 cut(s)	228, 273
SsiI	CCGC	2 cut(s)	328, 330
SspMI	CTAG	2 cut(s)	62, 394
StyD4I	CCNGG	1 cut(s)	19
StyI	CCWWGG	1 cut(s)	202
TaqI	TCGA	2 cut(s)	150, 360
TasI	AATT	2 cut(s)	228, 273
Tru1I	TTAA	3 cut(s)	93, 219, 288
Tru9I	TTAA	3 cut(s)	93, 219, 288
TseFI	GTSAC	2 cut(s)	160, 341
TseI	GCWGC	1 cut(s)	77
Tsp45I	GTSAC	2 cut(s)	160, 341
TspDTI	ATGAA	2 cut(s)	17, 94
XcmI	CCANNNNNNNNNTGG	1 cut(s)	375
XmiI	GTMKAC	2 cut(s)	8, 135
XspI	CTAG	2 cut(s)	62, 394
Zsp2I	ATGCAT	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.