RchiOBHm_Chr4g0400301

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Forward (+)
17853390 .. 17853773
384 bp
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UTR
Exon/CDS
Intron
PRQ37235

Sequence Viewer

Length: 384 bp
ATGACAAAGCCAACAATGAACCCGGAACAATTTATGCCCACTATTTTGTGTTGTCACTTTCCGCTGGAAGAGATCACAGCCGCCACCAAAAACTTCAATGATACATTCATTATTGGAGCTGGAGGATTTGGCAATGTATACAAAGGATGCACTGATGGTGGAGCCACTCTAGTTGCCATCAAACGACTGAAACCAGGGTCATCGCAGGGTGCCCACGAGTTTAAGACCGAAATTGAGATGCTTTCCCAACTCCGTCATCGCCATTTGGTTTCATTAATTAGATATTGTGTTGATAAGGGCGAGATGATTTTAGTGTATGATTACATGGCACACGGAACCCTCCGTGACCATCTCTACCACACCAACAACCCGTCTCTTCCCTAG

Protein Analysis

127

Amino Acids

14.21

Weight (kDa)

7.04

Isoelectric Point (pI)

41.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 37 - 119 1.1e-14 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 38 - 122 2.4e-17 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 209
AccI GTMKAC 1 cut(s) 138
AciI CCGC 2 cut(s) 62, 81
AgsI TTSAA 1 cut(s) 97
AjnI CCWGG 1 cut(s) 193
AluBI AGCT 1 cut(s) 119
AluI AGCT 1 cut(s) 119
Alw26I GTCTC 1 cut(s) 378
AseI ATTAAT 1 cut(s) 275
AsuC2I CCSGG 1 cut(s) 23
BaeGI GKGCMC 1 cut(s) 214
BanI GGYRCC 1 cut(s) 209
BauI CACGAG 1 cut(s) 215
BccI CCATC 3 cut(s) 149, 185, 357
BciT130I CCWGG 1 cut(s) 195
BcnI CCSGG 1 cut(s) 23
BcoDI GTCTC 1 cut(s) 378
BfaI CTAG 2 cut(s) 170, 382
BisI GCNGC 1 cut(s) 81
BlsI GCNGC 1 cut(s) 82
Bme1390I CCNGG 2 cut(s) 23, 195
BmiI GGNNCC 3 cut(s) 163, 211, 337
BmrFI CCNGG 2 cut(s) 23, 195
BmsI GCATC 2 cut(s) 137, 228
BpmI CTGGAG 1 cut(s) 141
BpuMI CCSGG 1 cut(s) 23
BsaJI CCNNGG 1 cut(s) 194
Bse3DI GCAATG 1 cut(s) 139
BseBI CCWGG 1 cut(s) 195
BseDI CCNNGG 1 cut(s) 194
BseGI GGATG 1 cut(s) 152
BseMI GCAATG 1 cut(s) 139
BseSI GKGCMC 1 cut(s) 214
BshNI GGYRCC 1 cut(s) 209
BsiSI CCGG 1 cut(s) 23
BsmAI GTCTC 1 cut(s) 378
BsmBI CGTCTC 1 cut(s) 378
Bsp1286I GDGCHC 1 cut(s) 214
Bsp143I GATC 1 cut(s) 72
BspACI CCGC 2 cut(s) 62, 81
BspLI GGNNCC 3 cut(s) 163, 211, 337
BspT107I GGYRCC 1 cut(s) 209
BsrDI GCAATG 1 cut(s) 139
BssECI CCNNGG 1 cut(s) 194
BssMI GATC 1 cut(s) 72
BssNAI GTATAC 1 cut(s) 139
BssSI CACGAG 1 cut(s) 215
Bst1107I GTATAC 1 cut(s) 139
Bst2BI CACGAG 1 cut(s) 215
Bst2UI CCWGG 1 cut(s) 195
Bst6I CTCTTC 2 cut(s) 63, 381
BstF5I GGATG 1 cut(s) 152
BstKTI GATC 1 cut(s) 75
BstMAI GTCTC 1 cut(s) 378
BstMBI GATC 1 cut(s) 72
BstNI CCWGG 1 cut(s) 195
BstSCI CCNGG 2 cut(s) 21, 193
BstSLI GKGCMC 1 cut(s) 214
BstZ17I GTATAC 1 cut(s) 139
BtgZI GCGATG 2 cut(s) 186, 242
BtsCI GGATG 1 cut(s) 152
BtsIMutI CAGTG 1 cut(s) 150
CspCI CAANNNNNGTGG 2 cut(s) 154, 189
CviAII CATG 1 cut(s) 325
CviJI RGCY 4 cut(s) 10, 80, 119, 164
CviKI_1 RGCY 4 cut(s) 10, 80, 119, 164
DpnI GATC 1 cut(s) 74
DpnII GATC 1 cut(s) 72
Eam1104I CTCTTC 2 cut(s) 63, 381
EarI CTCTTC 2 cut(s) 63, 381
EcoRII CCWGG 1 cut(s) 193
Esp3I CGTCTC 1 cut(s) 378
FaeI CATG 1 cut(s) 328
FaiI YATR 4 cut(s) 35, 139, 318, 326
FatI CATG 1 cut(s) 324
FblI GTMKAC 1 cut(s) 138
Fnu4HI GCNGC 1 cut(s) 81
FokI GGATG 1 cut(s) 159
Fsp4HI GCNGC 1 cut(s) 81
FspBI CTAG 2 cut(s) 170, 382
GluI GCNGC 1 cut(s) 81
GsuI CTGGAG 1 cut(s) 141
HapII CCGG 1 cut(s) 23
Hin1II CATG 1 cut(s) 328
HpaII CCGG 1 cut(s) 23
Hpy166II GTNNAC 1 cut(s) 139
Hpy8I GTNNAC 1 cut(s) 139
HpyCH4V TGCA 1 cut(s) 150
Hsp92II CATG 1 cut(s) 328
Kzo9I GATC 1 cut(s) 72
LmnI GCTCC 2 cut(s) 116, 161
LpnPI CCDG 6 cut(s) 36, 50, 105, 180, 191, 207
LweI GCATC 2 cut(s) 137, 228
MaeI CTAG 2 cut(s) 170, 382
MaeIII GTNAC 2 cut(s) 53, 344
MalI GATC 1 cut(s) 74
MboI GATC 1 cut(s) 72
MboII GAAGA 2 cut(s) 80, 368
MhlI GDGCHC 1 cut(s) 214
MluCI AATT 3 cut(s) 29, 231, 276
MnlI CCTC 2 cut(s) 116, 350
MseI TTAA 2 cut(s) 222, 275
MspA1I CMGCKG 1 cut(s) 64
MspI CCGG 1 cut(s) 23
MspR9I CCNGG 2 cut(s) 23, 195
MvaI CCWGG 1 cut(s) 195
NciI CCSGG 1 cut(s) 23
NdeII GATC 1 cut(s) 72
NlaIII CATG 1 cut(s) 328
NlaIV GGNNCC 3 cut(s) 163, 211, 337
NmuCI GTSAC 2 cut(s) 53, 344
PkrI GCNGC 1 cut(s) 82
PshBI ATTAAT 1 cut(s) 275
Psp6I CCWGG 1 cut(s) 193
PspGI CCWGG 1 cut(s) 193
PspN4I GGNNCC 3 cut(s) 163, 211, 337
SaqAI TTAA 2 cut(s) 222, 275
SatI GCNGC 1 cut(s) 81
Sau3AI GATC 1 cut(s) 72
ScrFI CCNGG 2 cut(s) 23, 195
SduI GDGCHC 1 cut(s) 214
SetI ASST 1 cut(s) 121
SfaNI GCATC 2 cut(s) 137, 228
Sse9I AATT 3 cut(s) 29, 231, 276
SsiI CCGC 2 cut(s) 62, 81
SspMI CTAG 2 cut(s) 170, 382
StyD4I CCNGG 2 cut(s) 21, 193
TaqII GACCGA 1 cut(s) 242
TasI AATT 3 cut(s) 29, 231, 276
TauI GCSGC 1 cut(s) 83
Tru1I TTAA 2 cut(s) 222, 275
Tru9I TTAA 2 cut(s) 222, 275
TscAI CASTG 1 cut(s) 157
TseFI GTSAC 2 cut(s) 53, 344
Tsp45I GTSAC 2 cut(s) 53, 344
TspDTI ATGAA 3 cut(s) 32, 97, 261
TspGWI ACGGA 3 cut(s) 242, 332, 348
TspRI CASTG 1 cut(s) 157
VspI ATTAAT 1 cut(s) 275
XmiI GTMKAC 1 cut(s) 138
XspI CTAG 2 cut(s) 170, 382
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.