Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005425.1

Orthogroup ID

OG0010855

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 3733

Gene Structure 3733 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005425.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

gttccagcatacttgtgtttctctgtcctcggatacttggttttcagaaaaagatggaaagtcaaggactctggctccagcaagaggagaataaagtttacaacaacccccgggtcgtcttatccgtataacttcttttcattggcagagatcaaagccgccaccaaaaacttcaatgatgcttttatcattggagctggaggatttggtaatgtgtacaaaggatgcattgatggtggagccactccagttgcaatcaaatggctgaaaccagaatcatcccaaggtgtccatgagttggagactgaaattgagatgctctcccaacttcgtcatcgccatttggtttcactcattggatattgtactgataaaggtgagatgatcttagtgtatgattacatggcacaaggaaccctccgtgaccatctctaccacactaataacccacctcttccctgggaacaacggcttcagatttgtattggtgcagctcgagggttgcagtatcttcatagtggtgcaaagggcaccatcattcaccgagatgtgaagagcacaaacatcttattggatgacaaatgggtggccaaggtttcagatttcggcctgtccaaaggcacaacaaacatgtcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009723 GO:0009725 GO:0009741 GO:0009787 GO:0009788 GO:0009791 GO:0009856 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010118 GO:0010483 GO:0010646 GO:0010648 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0022622 GO:0023051 GO:0023057 GO:0030054 GO:0030308 GO:0030312 GO:0032501 GO:0032502 GO:0033993 GO:0036211 GO:0040008 GO:0042221 GO:0043170 GO:0043207 GO:0043412 GO:0043680 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044426 GO:0044462 GO:0044464 GO:0044703 GO:0044706 GO:0045926 GO:0046777 GO:0048364 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051703 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Malectin_like Pkinase_Tyr

Protein Analysis

212

Amino Acids

23.68

Weight (kDa)

9.3

Isoelectric Point (pI)

41.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010855)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g12270
malus_domestica	MD03G1063500.v1.1
pyrus_communis	pycom03g05080
rosa_chinensis	RchiOBHm_Chr4g0400301 RchiOBHm_Chr4g0400381 RchiOBHm_Chr7g0185301
rosa_laevigata	RLG00000002261 RLG00000004924 RLG00000021536
rosa_multiflora	Rmu_sc0001873.1_g000008 Rmu_sc0005425.1_g000001 Rmu_sc0012343.1_g000001 Rmu_sc0023720.1_g000001
rosa_roxburghii	Rroxscaffold_3G00269070
rosa_rugosa	Rorug02G0514500 Rorug02G0514900 Rorug06G0467600
rosa_samantha	Rh7AG074900 Rh7CG073400 Rh7DG072900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	530
AccB7I	CCANNNNNTGG	1 cut(s)	298
AciI	CCGC	1 cut(s)	159
AcoI	YGGCCR	1 cut(s)	588
AcuI	CTGAAG	1 cut(s)	458
AfaI	GTAC	2 cut(s)	218, 367
AfiI	CCNNNNNNNGG	2 cut(s)	84, 298
AflIII	ACRYGT	1 cut(s)	630
AgsI	TTSAA	1 cut(s)	175
AjnI	CCWGG	1 cut(s)	458
AluBI	AGCT	2 cut(s)	197, 494
AluI	AGCT	2 cut(s)	197, 494
Alw21I	GWGCWC	1 cut(s)	560
Alw26I	GTCTC	1 cut(s)	296
Ama87I	CYCGRG	2 cut(s)	110, 495
AoxI	GGCC	2 cut(s)	588, 607
ApeKI	GCWGC	1 cut(s)	491
AsuC2I	CCSGG	2 cut(s)	111, 112
AsuHPI	GGTGA	2 cut(s)	389, 533
AvaI	CYCGRG	2 cut(s)	110, 495
BaeGI	GKGCMC	1 cut(s)	533
BalI	TGGCCA	1 cut(s)	590
BanI	GGYRCC	1 cut(s)	530
Bbv12I	GWGCWC	1 cut(s)	560
BbvI	GCAGC	1 cut(s)	503
BccI	CCATC	4 cut(s)	48, 227, 435, 542
BceAI	ACGGC	1 cut(s)	485
BciT130I	CCWGG	1 cut(s)	460
BciVI	GTATCC	1 cut(s)	26
BcnI	CCSGG	2 cut(s)	111, 112
BcoDI	GTCTC	1 cut(s)	296
BfuI	GTATCC	1 cut(s)	26
BisI	GCNGC	2 cut(s)	159, 492
BlsI	GCNGC	2 cut(s)	160, 493
Bme1390I	CCNGG	3 cut(s)	111, 112, 460
BmeT110I	CYCGRG	2 cut(s)	110, 495
BmiI	GGNNCC	4 cut(s)	76, 241, 415, 532
BmrFI	CCNGG	3 cut(s)	111, 112, 460
BmsI	GCATC	3 cut(s)	169, 215, 306
BplI	GAGNNNNNCTC	2 cut(s)	305, 337
BpmI	CTGGAG	3 cut(s)	61, 219, 231
BpuMI	CCSGG	2 cut(s)	111, 112
BsaJI	CCNNGG	7 cut(s)	28, 109, 110, 283, 458, 459, 591
BsaXI	ACNNNNNCTCC	2 cut(s)	59, 89
Bsc4I	CCNNNNNNNGG	2 cut(s)	84, 298
Bse1I	ACTGG	1 cut(s)	248
BseBI	CCWGG	1 cut(s)	460
BseDI	CCNNGG	7 cut(s)	28, 109, 110, 283, 458, 459, 591
BseGI	GGATG	3 cut(s)	230, 278, 580
BseLI	CCNNNNNNNGG	2 cut(s)	84, 298
BseNI	ACTGG	1 cut(s)	248
BseRI	GAGGAG	1 cut(s)	100
BseSI	GKGCMC	1 cut(s)	533
BseXI	GCAGC	1 cut(s)	503
BsgI	GTGCAG	1 cut(s)	510
BshFI	GGCC	2 cut(s)	590, 609
BshNI	GGYRCC	1 cut(s)	530
BsiHKAI	GWGCWC	1 cut(s)	560
BsiHKCI	CYCGRG	2 cut(s)	110, 495
BsiSI	CCGG	1 cut(s)	111
BslI	CCNNNNNNNGG	2 cut(s)	84, 298
BsmAI	GTCTC	1 cut(s)	296
BsnI	GGCC	2 cut(s)	590, 609
BsoBI	CYCGRG	2 cut(s)	110, 495
Bsp1286I	GDGCHC	2 cut(s)	533, 560
Bsp1407I	TGTACA	1 cut(s)	216
Bsp143I	GATC	2 cut(s)	150, 384
BspACI	CCGC	1 cut(s)	159
BspANI	GGCC	2 cut(s)	590, 609
BspLI	GGNNCC	4 cut(s)	76, 241, 415, 532
BspQI	GCTCTTC	1 cut(s)	548
BspT107I	GGYRCC	1 cut(s)	530
BsrGI	TGTACA	1 cut(s)	216
BsrI	ACTGG	1 cut(s)	248
BssECI	CCNNGG	7 cut(s)	28, 109, 110, 283, 458, 459, 591
BssMI	GATC	2 cut(s)	150, 384
BssT1I	CCWWGG	2 cut(s)	283, 591
Bst2UI	CCWGG	1 cut(s)	460
Bst6I	CTCTTC	2 cut(s)	459, 548
BstAUI	TGTACA	1 cut(s)	216
BstDEI	CTNAG	1 cut(s)	388
BstF5I	GGATG	3 cut(s)	230, 278, 580
BstKTI	GATC	2 cut(s)	153, 387
BstMAI	GTCTC	1 cut(s)	296
BstMBI	GATC	2 cut(s)	150, 384
BstNI	CCWGG	1 cut(s)	460
BstNSI	RCATGY	1 cut(s)	634
BstSCI	CCNGG	3 cut(s)	109, 110, 458
BstSLI	GKGCMC	1 cut(s)	533
BstV1I	GCAGC	1 cut(s)	503
BsuI	GTATCC	1 cut(s)	26
BsuRI	GGCC	2 cut(s)	590, 609
BtgZI	GCGATG	1 cut(s)	320
BtsCI	GGATG	3 cut(s)	230, 278, 580
Cfr9I	CCCGGG	1 cut(s)	110
Csp6I	GTAC	2 cut(s)	217, 366
CspCI	CAANNNNNGTGG	2 cut(s)	232, 267
CviAII	CATG	3 cut(s)	293, 403, 631
CviJI	RGCY	9 cut(s)	75, 158, 197, 242, 265, 472, 494, 590, 609
CviKI_1	RGCY	9 cut(s)	75, 158, 197, 242, 265, 472, 494, 590, 609
CviQI	GTAC	2 cut(s)	217, 366
DdeI	CTNAG	1 cut(s)	388
DpnI	GATC	2 cut(s)	152, 386
DpnII	GATC	2 cut(s)	150, 384
EaeI	YGGCCR	1 cut(s)	588
Eam1104I	CTCTTC	2 cut(s)	459, 548
EarI	CTCTTC	2 cut(s)	459, 548
Eco130I	CCWWGG	2 cut(s)	283, 591
Eco57I	CTGAAG	1 cut(s)	458
Eco88I	CYCGRG	2 cut(s)	110, 495
EcoRII	CCWGG	1 cut(s)	458
EcoT14I	CCWWGG	2 cut(s)	283, 591
EcoT22I	ATGCAT	1 cut(s)	230
ErhI	CCWWGG	2 cut(s)	283, 591
FaeI	CATG	3 cut(s)	296, 406, 634
FaiI	YATR	7 cut(s)	10, 129, 294, 396, 404, 516, 632
FatI	CATG	3 cut(s)	292, 402, 630
Fnu4HI	GCNGC	2 cut(s)	159, 492
FokI	GGATG	3 cut(s)	237, 265, 587
Fsp4HI	GCNGC	2 cut(s)	159, 492
GluI	GCNGC	2 cut(s)	159, 492
GsuI	CTGGAG	3 cut(s)	61, 219, 231
HaeIII	GGCC	2 cut(s)	590, 609
HapII	CCGG	1 cut(s)	111
Hin1II	CATG	3 cut(s)	296, 406, 634
HinfI	GANTC	2 cut(s)	68, 275
HpaII	CCGG	1 cut(s)	111
HphI	GGTGA	2 cut(s)	389, 533
Hpy166II	GTNNAC	2 cut(s)	99, 217
Hpy188I	TCNGA	4 cut(s)	32, 47, 477, 601
Hpy188III	TCNNGA	1 cut(s)	636
Hpy8I	GTNNAC	2 cut(s)	99, 217
HpyCH4V	TGCA	5 cut(s)	228, 254, 491, 505, 524
HpyF3I	CTNAG	1 cut(s)	388
Hsp92II	CATG	3 cut(s)	296, 406, 634
Kzo9I	GATC	2 cut(s)	150, 384
LguI	GCTCTTC	1 cut(s)	548
LmnI	GCTCC	3 cut(s)	80, 194, 239
Lsp1109I	GCAGC	1 cut(s)	503
LweI	GCATC	3 cut(s)	169, 215, 306
MaeIII	GTNAC	1 cut(s)	422
MalI	GATC	2 cut(s)	152, 386
MboI	GATC	2 cut(s)	150, 384
MboII	GAAGA	3 cut(s)	446, 503, 565
MhlI	GDGCHC	2 cut(s)	533, 560
MlsI	TGGCCA	1 cut(s)	590
MluCI	AATT	1 cut(s)	309
MluNI	TGGCCA	1 cut(s)	590
MlyI	GAGTC	1 cut(s)	62
MmeI	TCCRAC	1 cut(s)	279
MnlI	CCTC	6 cut(s)	38, 78, 194, 428, 462, 491
Mox20I	TGGCCA	1 cut(s)	590
Mph1103I	ATGCAT	1 cut(s)	230
MscI	TGGCCA	1 cut(s)	590
MslI	CAYNNNNRTG	3 cut(s)	13, 519, 546
Msp20I	TGGCCA	1 cut(s)	590
MspI	CCGG	1 cut(s)	111
MspR9I	CCNGG	3 cut(s)	111, 112, 460
MvaI	CCWGG	1 cut(s)	460
NciI	CCSGG	2 cut(s)	111, 112
NdeII	GATC	2 cut(s)	150, 384
NlaIII	CATG	3 cut(s)	296, 406, 634
NlaIV	GGNNCC	4 cut(s)	76, 241, 415, 532
NmuCI	GTSAC	1 cut(s)	422
NsiI	ATGCAT	1 cut(s)	230
NspI	RCATGY	1 cut(s)	634
PaeR7I	CTCGAG	1 cut(s)	495
PasI	CCCWGGG	1 cut(s)	459
PciI	ACATGT	1 cut(s)	630
PciSI	GCTCTTC	1 cut(s)	548
PcsI	WCGNNNNNNNCGW	1 cut(s)	122
PfeI	GAWTC	1 cut(s)	275
PflMI	CCANNNNNTGG	1 cut(s)	298
PkrI	GCNGC	2 cut(s)	160, 493
PleI	GAGTC	1 cut(s)	62
PpsI	GAGTC	1 cut(s)	62
PscI	ACATGT	1 cut(s)	630
Psp6I	CCWGG	1 cut(s)	458
PspGI	CCWGG	1 cut(s)	458
PspN4I	GGNNCC	4 cut(s)	76, 241, 415, 532
PspXI	VCTCGAGB	1 cut(s)	495
RsaI	GTAC	2 cut(s)	218, 367
RsaNI	GTAC	2 cut(s)	217, 366
RseI	CAYNNNNRTG	3 cut(s)	13, 519, 546
SapI	GCTCTTC	1 cut(s)	548
SatI	GCNGC	2 cut(s)	159, 492
Sau3AI	GATC	2 cut(s)	150, 384
SchI	GAGTC	1 cut(s)	62
ScrFI	CCNGG	3 cut(s)	111, 112, 460
SduI	GDGCHC	2 cut(s)	533, 560
SetI	ASST	6 cut(s)	199, 289, 379, 454, 496, 597
SfaNI	GCATC	3 cut(s)	169, 215, 306
Sfr274I	CTCGAG	1 cut(s)	495
SlaI	CTCGAG	1 cut(s)	495
SmaI	CCCGGG	1 cut(s)	112
SmiMI	CAYNNNNRTG	3 cut(s)	13, 519, 546
SmlI	CTYRAG	1 cut(s)	495
SmoI	CTYRAG	1 cut(s)	495
Sse9I	AATT	1 cut(s)	309
SsiI	CCGC	1 cut(s)	159
StyD4I	CCNGG	3 cut(s)	109, 110, 458
StyI	CCWWGG	2 cut(s)	283, 591
TaqI	TCGA	1 cut(s)	496
TasI	AATT	1 cut(s)	309
TatI	WGTACW	2 cut(s)	216, 365
TauI	GCSGC	1 cut(s)	161
TfiI	GAWTC	1 cut(s)	275
TseFI	GTSAC	1 cut(s)	422
TseI	GCWGC	1 cut(s)	491
Tsp45I	GTSAC	1 cut(s)	422
TspDTI	ATGAA	2 cut(s)	129, 503
TspGWI	ACGGA	2 cut(s)	114, 410
TspMI	CCCGGG	1 cut(s)	110
Van91I	CCANNNNNTGG	1 cut(s)	298
XceI	RCATGY	1 cut(s)	634
XcmI	CCANNNNNNNNNTGG	1 cut(s)	456
XhoI	CTCGAG	1 cut(s)	495
XmaI	CCCGGG	1 cut(s)	110
Zsp2I	ATGCAT	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.