Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0010855

Physical Location & Seq

Genomic Coordinates Reverse (-)

3942514 .. 3943079

Gene Structure 566 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g05080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGCCAGTTTTCAACTTCATCACCGGTGTAAACAACGTTGTCCAAGTAACGAAGGCATCATTCCACTCATGCAACGAAGAAGAACGAATTGGCCCATCCCGCACAACTGGCCCAACAAACATCACACTCACCTCCGCAGGCGACCACTACTACATCTGCAGTTTTAGCAATCATTGCCAGGTAGGCATGAAGCTAGCCGTCACCGTATCCAGTGCTTCCCCAGAATTTCCACGGCAAGGAACTGTGTCTCTCGTCGTTGGTGTAGTTTTTAGCATACTTTTTTTCGCTTTCCTCCTAGAGATTTTCCAACCACGACGAAAAGTCAAGTCCTTTGACTCCAACCATGGGAAGAGAAAGTCAACAGAGACCCCAGGATCACCTTTACCGCTGTATCTATGTCGTTACTTTCCACTGGCTGAGATTAAAGTCGCCACCCAAAACTTTAACGATAATTTCGTTATTGGTGTTGGAGGGTTTGGCAATGTGTACAAAGGGTGGATTGACAGTGGGGGCCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009723 GO:0009725 GO:0009741 GO:0009787 GO:0009788 GO:0009791 GO:0009856 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010118 GO:0010483 GO:0010646 GO:0010648 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0022622 GO:0023051 GO:0023057 GO:0030054 GO:0030308 GO:0030312 GO:0032501 GO:0032502 GO:0033993 GO:0036211 GO:0040008 GO:0042221 GO:0043170 GO:0043207 GO:0043412 GO:0043680 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044426 GO:0044462 GO:0044464 GO:0044703 GO:0044706 GO:0045926 GO:0046777 GO:0048364 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051703 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Malectin_like Pkinase_Tyr

Protein Analysis

173

Amino Acids

18.85

Weight (kDa)

8.96

Isoelectric Point (pI)

39.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_bind_like	PF02298	3 - 63	1.8e-13	Plastocyanin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010855)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g12270
malus_domestica	MD03G1063500.v1.1
pyrus_communis	pycom03g05080
rosa_chinensis	RchiOBHm_Chr4g0400301 RchiOBHm_Chr4g0400381 RchiOBHm_Chr7g0185301
rosa_laevigata	RLG00000002261 RLG00000004924 RLG00000021536
rosa_multiflora	Rmu_sc0001873.1_g000008 Rmu_sc0005425.1_g000001 Rmu_sc0012343.1_g000001 Rmu_sc0023720.1_g000001
rosa_roxburghii	Rroxscaffold_3G00269070
rosa_rugosa	Rorug02G0514500 Rorug02G0514900 Rorug06G0467600
rosa_samantha	Rh7AG074900 Rh7CG073400 Rh7DG072900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	100, 135, 386
AclI	AACGTT	1 cut(s)	36
AclWI	GGATC	1 cut(s)	382
AcsI	RAATTY	1 cut(s)	224
AfaI	GTAC	1 cut(s)	488
AfiI	CCNNNNNNNGG	2 cut(s)	236, 345
AgeI	ACCGGT	1 cut(s)	23
AgsI	TTSAA	1 cut(s)	13
AhdI	GACNNNNNGTC	1 cut(s)	320
AjnI	CCWGG	2 cut(s)	177, 370
AjuI	GAANNNNNNNTTGG	2 cut(s)	72, 104
AluBI	AGCT	1 cut(s)	193
AluI	AGCT	1 cut(s)	193
Alw26I	GTCTC	2 cut(s)	252, 359
AlwI	GGATC	1 cut(s)	382
AoxI	GGCC	3 cut(s)	91, 109, 511
ApaI	GGGCCC	1 cut(s)	515
ApoI	RAATTY	1 cut(s)	224
AsiGI	ACCGGT	1 cut(s)	23
AspS9I	GGNCC	4 cut(s)	92, 110, 511, 512
AsuHPI	GGTGA	4 cut(s)	13, 121, 193, 369
AsuNHI	GCTAGC	1 cut(s)	193
BaeGI	GKGCMC	1 cut(s)	515
BaeI	ACNNNNGTAYC	2 cut(s)	374, 407
BanII	GRGCYC	1 cut(s)	515
BccI	CCATC	1 cut(s)	103
BceAI	ACGGC	2 cut(s)	182, 248
BciT130I	CCWGG	2 cut(s)	179, 372
BciVI	GTATCC	1 cut(s)	217
BcoDI	GTCTC	2 cut(s)	252, 359
BfaI	CTAG	2 cut(s)	194, 296
BfmI	CTRYAG	1 cut(s)	157
BfuI	GTATCC	1 cut(s)	217
BglI	GCCNNNNNGGC	1 cut(s)	183
Bme1390I	CCNGG	2 cut(s)	179, 372
BmeRI	GACNNNNNGTC	1 cut(s)	320
BmgT120I	GGNCC	4 cut(s)	92, 110, 511, 512
BmiI	GGNNCC	2 cut(s)	512, 513
BmrFI	CCNGG	2 cut(s)	179, 372
BmsI	GCATC	1 cut(s)	65
BmtI	GCTAGC	1 cut(s)	197
BsaI	GGTCTC	1 cut(s)	359
BsaJI	CCNNGG	3 cut(s)	230, 343, 370
BsaWI	WCCGGW	1 cut(s)	23
Bsc4I	CCNNNNNNNGG	2 cut(s)	236, 345
Bse118I	RCCGGY	1 cut(s)	23
Bse1I	ACTGG	4 cut(s)	5, 112, 210, 417
Bse3DI	GCAATG	2 cut(s)	172, 487
BseBI	CCWGG	2 cut(s)	179, 372
BseDI	CCNNGG	3 cut(s)	230, 343, 370
BseGI	GGATG	1 cut(s)	95
BseLI	CCNNNNNNNGG	2 cut(s)	236, 345
BseMI	GCAATG	2 cut(s)	172, 487
BseMII	CTCAG	1 cut(s)	408
BseNI	ACTGG	4 cut(s)	5, 112, 210, 417
BseSI	GKGCMC	1 cut(s)	515
BshFI	GGCC	3 cut(s)	93, 111, 513
BshTI	ACCGGT	1 cut(s)	23
BsiSI	CCGG	1 cut(s)	24
BslI	CCNNNNNNNGG	2 cut(s)	236, 345
BsmAI	GTCTC	2 cut(s)	252, 359
BsnI	GGCC	3 cut(s)	93, 111, 513
Bso31I	GGTCTC	1 cut(s)	359
Bsp120I	GGGCCC	1 cut(s)	511
Bsp1286I	GDGCHC	1 cut(s)	515
Bsp1407I	TGTACA	1 cut(s)	486
Bsp143I	GATC	1 cut(s)	374
Bsp19I	CCATGG	1 cut(s)	343
BspACI	CCGC	3 cut(s)	100, 135, 386
BspANI	GGCC	3 cut(s)	93, 111, 513
BspCNI	CTCAG	1 cut(s)	409
BspLI	GGNNCC	2 cut(s)	512, 513
BspMAI	CTGCAG	1 cut(s)	161
BspOI	GCTAGC	1 cut(s)	197
BspPI	GGATC	1 cut(s)	382
BspTNI	GGTCTC	1 cut(s)	359
BsrDI	GCAATG	2 cut(s)	172, 487
BsrFI	RCCGGY	1 cut(s)	23
BsrGI	TGTACA	1 cut(s)	486
BsrI	ACTGG	4 cut(s)	5, 112, 210, 417
BssAI	RCCGGY	1 cut(s)	23
BssECI	CCNNGG	3 cut(s)	230, 343, 370
BssMI	GATC	1 cut(s)	374
BssT1I	CCWWGG	1 cut(s)	343
Bst2UI	CCWGG	2 cut(s)	179, 372
Bst4CI	ACNGT	3 cut(s)	205, 244, 506
Bst6I	CTCTTC	1 cut(s)	344
BstAPI	GCANNNNNTGC	1 cut(s)	174
BstAUI	TGTACA	1 cut(s)	486
BstC8I	GCNNGC	2 cut(s)	139, 195
BstDEI	CTNAG	1 cut(s)	417
BstDSI	CCRYGG	2 cut(s)	230, 343
BstF5I	GGATG	1 cut(s)	95
BstKTI	GATC	1 cut(s)	377
BstMAI	GTCTC	2 cut(s)	252, 359
BstMBI	GATC	1 cut(s)	374
BstMWI	GCNNNNNNNGC	5 cut(s)	99, 108, 165, 174, 183
BstNI	CCWGG	2 cut(s)	179, 372
BstSCI	CCNGG	2 cut(s)	177, 370
BstSFI	CTRYAG	1 cut(s)	157
BstSLI	GKGCMC	1 cut(s)	515
BsuI	GTATCC	1 cut(s)	217
BsuRI	GGCC	3 cut(s)	93, 111, 513
BtgI	CCRYGG	2 cut(s)	230, 343
BtsCI	GGATG	1 cut(s)	95
BtsIMutI	CAGTG	3 cut(s)	217, 410, 511
Cac8I	GCNNGC	2 cut(s)	139, 195
Cfr10I	RCCGGY	1 cut(s)	23
Cfr13I	GGNCC	4 cut(s)	92, 110, 511, 512
Csp6I	GTAC	1 cut(s)	487
CspAI	ACCGGT	1 cut(s)	23
CviAII	CATG	4 cut(s)	69, 187, 344, 516
CviJI	RGCY	6 cut(s)	93, 111, 193, 197, 416, 513
CviKI_1	RGCY	6 cut(s)	93, 111, 193, 197, 416, 513
CviQI	GTAC	1 cut(s)	487
DdeI	CTNAG	1 cut(s)	417
DpnI	GATC	1 cut(s)	376
DpnII	GATC	1 cut(s)	374
DriI	GACNNNNNGTC	1 cut(s)	320
Eam1104I	CTCTTC	1 cut(s)	344
Eam1105I	GACNNNNNGTC	1 cut(s)	320
EarI	CTCTTC	1 cut(s)	344
Eco130I	CCWWGG	1 cut(s)	343
Eco24I	GRGCYC	1 cut(s)	515
Eco31I	GGTCTC	1 cut(s)	359
EcoO109I	RGGNCCY	1 cut(s)	511
EcoRII	CCWGG	2 cut(s)	177, 370
EcoT14I	CCWWGG	1 cut(s)	343
EcoT38I	GRGCYC	1 cut(s)	515
ErhI	CCWWGG	1 cut(s)	343
FaeI	CATG	4 cut(s)	72, 190, 347, 519
FaiI	YATR	6 cut(s)	70, 188, 275, 345, 397, 517
FatI	CATG	4 cut(s)	68, 186, 343, 515
FauI	CCCGC	1 cut(s)	107
FokI	GGATG	1 cut(s)	82
FriOI	GRGCYC	1 cut(s)	515
FspBI	CTAG	2 cut(s)	194, 296
HaeIII	GGCC	3 cut(s)	93, 111, 513
HapII	CCGG	1 cut(s)	24
Hin1II	CATG	4 cut(s)	72, 190, 347, 519
HincII	GTYRAC	1 cut(s)	360
HindII	GTYRAC	1 cut(s)	360
HinfI	GANTC	1 cut(s)	335
HpaII	CCGG	1 cut(s)	24
HphI	GGTGA	4 cut(s)	13, 121, 193, 369
Hpy166II	GTNNAC	3 cut(s)	31, 360, 487
Hpy8I	GTNNAC	3 cut(s)	31, 360, 487
Hpy99I	CGWCG	2 cut(s)	257, 318
HpyAV	CCTTC	1 cut(s)	46
HpyCH4III	ACNGT	3 cut(s)	205, 244, 506
HpyCH4IV	ACGT	1 cut(s)	36
HpyCH4V	TGCA	2 cut(s)	72, 159
HpyF10VI	GCNNNNNNNGC	5 cut(s)	99, 108, 165, 174, 183
HpyF3I	CTNAG	1 cut(s)	417
HpySE526I	ACGT	1 cut(s)	36
Hsp92II	CATG	4 cut(s)	72, 190, 347, 519
Kzo9I	GATC	1 cut(s)	374
LweI	GCATC	1 cut(s)	65
MaeI	CTAG	2 cut(s)	194, 296
MaeII	ACGT	1 cut(s)	36
MaeIII	GTNAC	3 cut(s)	46, 199, 401
MalI	GATC	1 cut(s)	376
MboI	GATC	1 cut(s)	374
MboII	GAAGA	3 cut(s)	89, 92, 361
MhlI	GDGCHC	1 cut(s)	515
MluCI	AATT	3 cut(s)	87, 224, 451
MlyI	GAGTC	1 cut(s)	329
MmeI	TCCRAC	3 cut(s)	331, 363, 448
MnlI	CCTC	3 cut(s)	142, 302, 464
MseI	TTAA	2 cut(s)	423, 444
MspA1I	CMGCKG	1 cut(s)	388
MspI	CCGG	1 cut(s)	24
MspR9I	CCNGG	2 cut(s)	179, 372
MvaI	CCWGG	2 cut(s)	179, 372
MwoI	GCNNNNNNNGC	5 cut(s)	99, 108, 165, 174, 183
NcoI	CCATGG	1 cut(s)	343
NdeII	GATC	1 cut(s)	374
NheI	GCTAGC	1 cut(s)	193
NlaIII	CATG	4 cut(s)	72, 190, 347, 519
NlaIV	GGNNCC	2 cut(s)	512, 513
NmuCI	GTSAC	1 cut(s)	199
PcsI	WCGNNNNNNNCGW	1 cut(s)	453
PinAI	ACCGGT	1 cut(s)	23
PleI	GAGTC	1 cut(s)	329
PpsI	GAGTC	1 cut(s)	329
Psp1406I	AACGTT	1 cut(s)	36
Psp6I	CCWGG	2 cut(s)	177, 370
PspGI	CCWGG	2 cut(s)	177, 370
PspN4I	GGNNCC	2 cut(s)	512, 513
PspOMI	GGGCCC	1 cut(s)	511
PspPI	GGNCC	4 cut(s)	92, 110, 511, 512
PstI	CTGCAG	1 cut(s)	161
RsaI	GTAC	1 cut(s)	488
RsaNI	GTAC	1 cut(s)	487
SaqAI	TTAA	2 cut(s)	423, 444
Sau3AI	GATC	1 cut(s)	374
Sau96I	GGNCC	4 cut(s)	92, 110, 511, 512
SchI	GAGTC	1 cut(s)	329
ScrFI	CCNGG	2 cut(s)	179, 372
SduI	GDGCHC	1 cut(s)	515
SetI	ASST	5 cut(s)	39, 134, 183, 195, 382
SfaNI	GCATC	1 cut(s)	65
SfcI	CTRYAG	1 cut(s)	157
SgrAI	CRCCGGYG	1 cut(s)	23
Sse9I	AATT	3 cut(s)	87, 224, 451
SsiI	CCGC	3 cut(s)	100, 135, 386
SspMI	CTAG	2 cut(s)	194, 296
StyD4I	CCNGG	2 cut(s)	177, 370
StyI	CCWWGG	1 cut(s)	343
TaaI	ACNGT	3 cut(s)	205, 244, 506
TaiI	ACGT	1 cut(s)	39
TasI	AATT	3 cut(s)	87, 224, 451
TatI	WGTACW	1 cut(s)	486
Tru1I	TTAA	2 cut(s)	423, 444
Tru9I	TTAA	2 cut(s)	423, 444
TscAI	CASTG	3 cut(s)	217, 417, 511
TseFI	GTSAC	1 cut(s)	199
Tsp45I	GTSAC	1 cut(s)	199
TspDTI	ATGAA	2 cut(s)	7, 203
TspRI	CASTG	3 cut(s)	217, 417, 511
XapI	RAATTY	1 cut(s)	224
XspI	CTAG	2 cut(s)	194, 296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.