Rh7CG073400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0010855
Physical Location & Seq
Reverse (-)
5242478 .. 5243769
1292 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG073400.1

Sequence Viewer

Length: 444 bp
ATGGAGCAGAGAAGAAAACGTAGGGAGAAAGATGGCGACGAGGAAATGGACAAGAGCGGAGGAGGAGGAGGGAGGAGGAAGAAGACAGCGCAGCAGGTGATCAAGGCCGACAAGGAAGAAGCGGTGGCGGCGACGGAGGAGGAGGTGGATGAATTCTACGCCATAGTCAGGAGGATGCAGGCGGCGGTCAAGTACTTCGAGAAAGGTAATAACAACAATATTCACGCCAATATAAACAATGGCGGGGATCTGGTGCGGTGGAGAGTGGCGCTGGAGTCTACTCCGCCGGTGGTTCCCGTCGCCGATGATGATGTTGCTGACGATCATGTAAAGAGTGCGACTTCCGATGATCATCGTGAGCAGTTGGTTGTTCAACTAGCTGATAATAATGGAGTTCTGGACTTGAACGAGGCGCCGGGTGAGGAGGCGGAGACTACTACGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

147

Amino Acids

16.29

Weight (kDa)

4.75

Isoelectric Point (pI)

59.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 85
Acc36I ACCTGC 1 cut(s) 85
AccB1I GGYRCC 1 cut(s) 412
AccBSI CCGCTC 1 cut(s) 57
AccI GTMKAC 1 cut(s) 278
AciI CCGC 9 cut(s) 57, 122, 128, 182, 185, 243, 256, 284, 428
AclWI GGATC 1 cut(s) 255
AcsI RAATTY 1 cut(s) 152
AcyI GRCGYC 1 cut(s) 413
AfaI GTAC 1 cut(s) 194
AfiI CCNNNNNNNGG 1 cut(s) 168
AgsI TTSAA 2 cut(s) 374, 406
AluBI AGCT 1 cut(s) 380
AluI AGCT 1 cut(s) 380
Alw26I GTCTC 1 cut(s) 425
AlwI GGATC 1 cut(s) 255
AoxI GGCC 1 cut(s) 105
ApeKI GCWGC 1 cut(s) 91
ApoI RAATTY 1 cut(s) 152
AspLEI GCGC 3 cut(s) 91, 271, 415
AsuC2I CCSGG 1 cut(s) 417
AsuHPI GGTGA 2 cut(s) 109, 431
BanI GGYRCC 1 cut(s) 412
BbsI GAAGAC 1 cut(s) 89
BbvI GCAGC 1 cut(s) 103
BccI CCATC 1 cut(s) 26
BclI TGATCA 2 cut(s) 99, 349
BcnI CCSGG 1 cut(s) 417
BcoDI GTCTC 1 cut(s) 425
BfaI CTAG 1 cut(s) 377
BfoI RGCGCY 2 cut(s) 272, 416
BfuAI ACCTGC 1 cut(s) 85
BisI GCNGC 3 cut(s) 92, 129, 183
BlsI GCNGC 3 cut(s) 93, 130, 184
BmcAI AGTACT 1 cut(s) 194
Bme1390I CCNGG 1 cut(s) 417
BmiI GGNNCC 2 cut(s) 294, 414
BmrFI CCNGG 1 cut(s) 417
BmsI GCATC 1 cut(s) 165
BpiI GAAGAC 1 cut(s) 89
BpmI CTGGAG 1 cut(s) 293
BpuMI CCSGG 1 cut(s) 417
BsaAI YACGTR 1 cut(s) 441
BsaBI GATNNNNATC 1 cut(s) 351
BsaHI GRCGYC 1 cut(s) 413
Bsc4I CCNNNNNNNGG 1 cut(s) 168
Bse118I RCCGGY 1 cut(s) 286
Bse8I GATNNNNATC 1 cut(s) 351
BseGI GGATG 2 cut(s) 154, 180
BseJI GATNNNNATC 1 cut(s) 351
BseLI CCNNNNNNNGG 1 cut(s) 168
BseRI GAGGAG 7 cut(s) 75, 78, 81, 88, 152, 155, 437
BseXI GCAGC 1 cut(s) 103
BshFI GGCC 1 cut(s) 107
BshNI GGYRCC 1 cut(s) 412
BsiSI CCGG 2 cut(s) 287, 416
BslI CCNNNNNNNGG 1 cut(s) 168
BsmAI GTCTC 1 cut(s) 425
BsnI GGCC 1 cut(s) 107
Bsp143I GATC 4 cut(s) 99, 247, 322, 349
BspACI CCGC 9 cut(s) 57, 122, 128, 182, 185, 243, 256, 284, 428
BspANI GGCC 1 cut(s) 107
BspLI GGNNCC 2 cut(s) 294, 414
BspMI ACCTGC 1 cut(s) 85
BspPI GGATC 1 cut(s) 255
BspT107I GGYRCC 1 cut(s) 412
BsrBI CCGCTC 1 cut(s) 57
BsrFI RCCGGY 1 cut(s) 286
BssAI RCCGGY 1 cut(s) 286
BssMI GATC 4 cut(s) 99, 247, 322, 349
BssNI GRCGYC 1 cut(s) 413
BstACI GRCGYC 1 cut(s) 413
BstBAI YACGTR 1 cut(s) 441
BstC8I GCNNGC 1 cut(s) 180
BstF5I GGATG 2 cut(s) 154, 180
BstH2I RGCGCY 2 cut(s) 272, 416
BstHHI GCGC 3 cut(s) 91, 271, 415
BstKTI GATC 4 cut(s) 102, 250, 325, 352
BstMAI GTCTC 1 cut(s) 425
BstMBI GATC 4 cut(s) 99, 247, 322, 349
BstMWI GCNNNNNNNGC 1 cut(s) 128
BstSCI CCNGG 1 cut(s) 415
BstSNI TACGTA 1 cut(s) 441
BstV1I GCAGC 1 cut(s) 103
BstV2I GAAGAC 1 cut(s) 89
BstX2I RGATCY 1 cut(s) 247
BstYI RGATCY 1 cut(s) 247
BsuRI GGCC 1 cut(s) 107
BtsCI GGATG 2 cut(s) 154, 180
BveI ACCTGC 1 cut(s) 85
Cac8I GCNNGC 1 cut(s) 180
CfoI GCGC 3 cut(s) 91, 271, 415
Cfr10I RCCGGY 1 cut(s) 286
Csp6I GTAC 1 cut(s) 193
CviAII CATG 1 cut(s) 326
CviJI RGCY 2 cut(s) 107, 380
CviKI_1 RGCY 2 cut(s) 107, 380
CviQI GTAC 1 cut(s) 193
DinI GGCGCC 1 cut(s) 414
DpnI GATC 4 cut(s) 101, 249, 324, 351
DpnII GATC 4 cut(s) 99, 247, 322, 349
EciI GGCGGA 2 cut(s) 273, 443
Eco105I TACGTA 1 cut(s) 441
EcoRI GAATTC 1 cut(s) 152
EgeI GGCGCC 1 cut(s) 414
EheI GGCGCC 1 cut(s) 414
FaeI CATG 1 cut(s) 329
FaiI YATR 3 cut(s) 164, 233, 327
FatI CATG 1 cut(s) 325
FauI CCCGC 1 cut(s) 236
FbaI TGATCA 2 cut(s) 99, 349
FblI GTMKAC 1 cut(s) 278
Fnu4HI GCNGC 3 cut(s) 92, 129, 183
FokI GGATG 2 cut(s) 161, 187
Fsp4HI GCNGC 3 cut(s) 92, 129, 183
FspBI CTAG 1 cut(s) 377
GlaI GCGC 3 cut(s) 90, 270, 414
GluI GCNGC 3 cut(s) 92, 129, 183
GsuI CTGGAG 1 cut(s) 293
HaeII RGCGCY 2 cut(s) 272, 416
HaeIII GGCC 1 cut(s) 107
HapII CCGG 2 cut(s) 287, 416
HhaI GCGC 3 cut(s) 91, 271, 415
Hin1I GRCGYC 1 cut(s) 413
Hin1II CATG 1 cut(s) 329
Hin6I GCGC 3 cut(s) 89, 269, 413
HinP1I GCGC 3 cut(s) 89, 269, 413
HinfI GANTC 1 cut(s) 275
HpaII CCGG 2 cut(s) 287, 416
HphI GGTGA 2 cut(s) 109, 431
Hpy166II GTNNAC 1 cut(s) 279
Hpy188I TCNGA 1 cut(s) 346
Hpy188III TCNNGA 4 cut(s) 169, 199, 356, 398
Hpy8I GTNNAC 1 cut(s) 279
Hpy99I CGWCG 3 cut(s) 41, 136, 302
HpyCH4IV ACGT 2 cut(s) 19, 440
HpyCH4V TGCA 1 cut(s) 178
HpyF10VI GCNNNNNNNGC 1 cut(s) 128
HpySE526I ACGT 2 cut(s) 19, 440
Hsp92I GRCGYC 1 cut(s) 413
Hsp92II CATG 1 cut(s) 329
HspAI GCGC 3 cut(s) 89, 269, 413
KasI GGCGCC 1 cut(s) 412
Ksp22I TGATCA 2 cut(s) 99, 349
Kzo9I GATC 4 cut(s) 99, 247, 322, 349
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 8 cut(s) 80, 154, 164, 236, 257, 300, 383, 429
Lsp1109I GCAGC 1 cut(s) 103
LweI GCATC 1 cut(s) 165
MaeI CTAG 1 cut(s) 377
MaeII ACGT 2 cut(s) 19, 440
MalI GATC 4 cut(s) 101, 249, 324, 351
MbiI CCGCTC 1 cut(s) 57
MboI GATC 4 cut(s) 99, 247, 322, 349
MboII GAAGA 4 cut(s) 24, 91, 94, 128
MflI RGATCY 1 cut(s) 247
MluCI AATT 1 cut(s) 152
Mly113I GGCGCC 1 cut(s) 413
MlyI GAGTC 1 cut(s) 284
MspI CCGG 2 cut(s) 287, 416
MspR9I CCNGG 1 cut(s) 417
MwoI GCNNNNNNNGC 1 cut(s) 128
NarI GGCGCC 1 cut(s) 413
NciI CCSGG 1 cut(s) 417
NdeII GATC 4 cut(s) 99, 247, 322, 349
NlaIII CATG 1 cut(s) 329
NlaIV GGNNCC 2 cut(s) 294, 414
PaqCI CACCTGC 1 cut(s) 85
PkrI GCNGC 3 cut(s) 93, 130, 184
PleI GAGTC 1 cut(s) 283
PluTI GGCGCC 1 cut(s) 416
PpsI GAGTC 1 cut(s) 283
Ppu21I YACGTR 1 cut(s) 441
PspN4I GGNNCC 2 cut(s) 294, 414
PsuI RGATCY 1 cut(s) 247
RsaI GTAC 1 cut(s) 194
RsaNI GTAC 1 cut(s) 193
SatI GCNGC 3 cut(s) 92, 129, 183
Sau3AI GATC 4 cut(s) 99, 247, 322, 349
ScaI AGTACT 1 cut(s) 194
SchI GAGTC 1 cut(s) 284
ScrFI CCNGG 1 cut(s) 417
SetI ASST 6 cut(s) 22, 99, 147, 208, 382, 443
SfaNI GCATC 1 cut(s) 165
SfoI GGCGCC 1 cut(s) 414
SgrAI CRCCGGYG 1 cut(s) 286
SnaBI TACGTA 1 cut(s) 441
Sse9I AATT 1 cut(s) 152
SsiI CCGC 9 cut(s) 57, 122, 128, 182, 185, 243, 256, 284, 428
SspDI GGCGCC 1 cut(s) 412
SspI AATATT 1 cut(s) 220
SspMI CTAG 1 cut(s) 377
StyD4I CCNGG 1 cut(s) 415
TaiI ACGT 2 cut(s) 22, 443
TaqI TCGA 1 cut(s) 198
TasI AATT 1 cut(s) 152
TatI WGTACW 1 cut(s) 192
TauI GCSGC 2 cut(s) 131, 185
TseI GCWGC 1 cut(s) 91
TspDTI ATGAA 1 cut(s) 165
TspGWI ACGGA 1 cut(s) 149
XapI RAATTY 1 cut(s) 152
XmiI GTMKAC 1 cut(s) 278
XspI CTAG 1 cut(s) 377
ZrmI AGTACT 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.