Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023720.1

Orthogroup ID

OG0010855

Physical Location & Seq

Genomic Coordinates Forward (+)

3135 .. 4172

Gene Structure 1038 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023720.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

atgacatcacccttgcctgtggctcttccggcaaccaacccactactaattataaccttcgaaattggaccggagatatcatctcaaaattttcccccatacaagttgatcacacaaacacccactctaaagtcagaaaagcaccgttttccccgtccactgcaggccaagtaccattcaacgcagcgcggctttctcactcggcattcacttataggtttcccctctctcccggccaaaagtttatccgcttgcacttcaaccctgagctacaatctcacctggtcttttcctgtagatcccgagtttttctatctggtaaggctccatttttgtgagtttgaagaaatgatgacagaccccggagaccgggtgttcttcatctacctagccaatcaaacggagactaaatatagtgatgaaatcttgaatgggctcgaaatcttcaaactcaatgacacaaacggcaatctcgccggacccaatcccgacccaccaccgccggaggaaaaaccaaatgtgaaactggaaagctctagaaaaccgaagaagaagtcgattcctatgcttgctatccttgtcggtgtagtttcggtcttacttgttctttccctagtcgggattttagttttcgagcgtggaagaaaactcaagtactccagctccaaccccaggatgacgaggtcaaccacgaaccttgagtcaactttcccatcttatttatgtcgttacttttcactggcagagatcaaatccgccaccaaaaacttcaatgacactcttatcgttggaattggtgggtttggccacttgtacaaaggacactttgatgatggggccacccttgttgcaatcaaacggctcaaagccacttcatcgcagggcgccctttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009723 GO:0009725 GO:0009741 GO:0009787 GO:0009788 GO:0009791 GO:0009856 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010118 GO:0010483 GO:0010646 GO:0010648 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0022622 GO:0023051 GO:0023057 GO:0030054 GO:0030308 GO:0030312 GO:0032501 GO:0032502 GO:0033993 GO:0036211 GO:0040008 GO:0042221 GO:0043170 GO:0043207 GO:0043412 GO:0043680 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044426 GO:0044462 GO:0044464 GO:0044703 GO:0044706 GO:0045926 GO:0046777 GO:0048364 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051703 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Malectin_like Pkinase_Tyr

Protein Analysis

297

Amino Acids

33.12

Weight (kDa)

9.3

Isoelectric Point (pI)

34.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010855)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g12270
malus_domestica	MD03G1063500.v1.1
pyrus_communis	pycom03g05080
rosa_chinensis	RchiOBHm_Chr4g0400301 RchiOBHm_Chr4g0400381 RchiOBHm_Chr7g0185301
rosa_laevigata	RLG00000002261 RLG00000004924 RLG00000021536
rosa_multiflora	Rmu_sc0001873.1_g000008 Rmu_sc0005425.1_g000001 Rmu_sc0012343.1_g000001 Rmu_sc0023720.1_g000001
rosa_roxburghii	Rroxscaffold_3G00269070
rosa_rugosa	Rorug02G0514500 Rorug02G0514900 Rorug06G0467600
rosa_samantha	Rh7AG074900 Rh7CG073400 Rh7DG072900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	53
AccB1I	GGYRCC	1 cut(s)	884
AccII	CGCG	1 cut(s)	189
AciI	CCGC	4 cut(s)	189, 249, 500, 756
AclWI	GGATC	1 cut(s)	293
AcoI	YGGCCR	2 cut(s)	234, 805
AcsI	RAATTY	1 cut(s)	88
AcyI	GRCGYC	1 cut(s)	885
AfaI	GTAC	3 cut(s)	173, 656, 815
AfiI	CCNNNNNNNGG	3 cut(s)	369, 618, 672
AgsI	TTSAA	6 cut(s)	180, 261, 344, 430, 448, 772
AjnI	CCWGG	2 cut(s)	281, 671
AluBI	AGCT	3 cut(s)	270, 534, 663
AluI	AGCT	3 cut(s)	270, 534, 663
Alw26I	GTCTC	2 cut(s)	360, 398
AlwI	GGATC	1 cut(s)	293
Ama87I	CYCGRG	1 cut(s)	302
AoxI	GGCC	4 cut(s)	165, 234, 805, 837
ApeKI	GCWGC	1 cut(s)	184
ApoI	RAATTY	1 cut(s)	88
ArsI	GACNNNNNNTTYG	4 cut(s)	539, 571, 686, 718
AspLEI	GCGC	2 cut(s)	189, 887
AspS9I	GGNCC	3 cut(s)	68, 479, 837
AsuC2I	CCSGG	3 cut(s)	233, 363, 371
AsuHPI	GGTGA	1 cut(s)	271
AsuII	TTCGAA	1 cut(s)	60
AvaI	CYCGRG	1 cut(s)	302
AvaII	GGWCC	2 cut(s)	68, 479
BalI	TGGCCA	1 cut(s)	807
BanI	GGYRCC	1 cut(s)	884
BanII	GRGCYC	1 cut(s)	438
BbvI	GCAGC	1 cut(s)	196
BccI	CCATC	2 cut(s)	721, 827
BceAI	ACGGC	2 cut(s)	481, 875
BcgI	CGANNNNNNTGC	2 cut(s)	547, 581
BciT130I	CCWGG	2 cut(s)	283, 673
BclI	TGATCA	1 cut(s)	108
BcnI	CCSGG	3 cut(s)	233, 363, 371
BcoDI	GTCTC	2 cut(s)	360, 398
BfaI	CTAG	3 cut(s)	389, 537, 614
BfmI	CTRYAG	2 cut(s)	161, 294
BfoI	RGCGCY	1 cut(s)	888
BisI	GCNGC	2 cut(s)	185, 190
BlsI	GCNGC	2 cut(s)	186, 191
BmcAI	AGTACT	1 cut(s)	656
Bme1390I	CCNGG	5 cut(s)	233, 283, 363, 371, 673
Bme18I	GGWCC	2 cut(s)	68, 479
BmeT110I	CYCGRG	1 cut(s)	302
BmgT120I	GGNCC	3 cut(s)	68, 479, 837
BmiI	GGNNCC	4 cut(s)	326, 481, 838, 886
BmrFI	CCNGG	5 cut(s)	233, 283, 363, 371, 673
BpmI	CTGGAG	1 cut(s)	643
Bpu10I	CCTNAGC	1 cut(s)	266
Bpu14I	TTCGAA	1 cut(s)	60
BpuEI	CTTGAG	2 cut(s)	635, 719
BpuMI	CCSGG	3 cut(s)	233, 363, 371
BsaHI	GRCGYC	1 cut(s)	885
BsaI	GGTCTC	1 cut(s)	360
BsaJI	CCNNGG	2 cut(s)	361, 671
BsaWI	WCCGGW	1 cut(s)	70
BsaXI	ACNNNNNCTCC	4 cut(s)	357, 387, 647, 677
Bsc4I	CCNNNNNNNGG	3 cut(s)	369, 618, 672
Bse1I	ACTGG	2 cut(s)	531, 744
BseBI	CCWGG	2 cut(s)	283, 673
BseDI	CCNNGG	2 cut(s)	361, 671
BseGI	GGATG	1 cut(s)	681
BseLI	CCNNNNNNNGG	3 cut(s)	369, 618, 672
BseMII	CTCAG	1 cut(s)	257
BseNI	ACTGG	2 cut(s)	531, 744
BseXI	GCAGC	1 cut(s)	196
Bsh1236I	CGCG	1 cut(s)	189
BshFI	GGCC	4 cut(s)	167, 236, 807, 839
BshNI	GGYRCC	1 cut(s)	884
BsiHKCI	CYCGRG	1 cut(s)	302
BsiSI	CCGG	7 cut(s)	29, 71, 233, 363, 370, 477, 503
BslI	CCNNNNNNNGG	3 cut(s)	369, 618, 672
BsmAI	GTCTC	2 cut(s)	360, 398
BsmI	GAATGC	1 cut(s)	205
BsnI	GGCC	4 cut(s)	167, 236, 807, 839
Bso31I	GGTCTC	1 cut(s)	360
BsoBI	CYCGRG	1 cut(s)	302
Bsp119I	TTCGAA	1 cut(s)	60
Bsp1286I	GDGCHC	1 cut(s)	438
Bsp1407I	TGTACA	1 cut(s)	813
Bsp143I	GATC	3 cut(s)	108, 298, 747
BspACI	CCGC	4 cut(s)	189, 249, 500, 756
BspANI	GGCC	4 cut(s)	167, 236, 807, 839
BspCNI	CTCAG	1 cut(s)	258
BspFNI	CGCG	1 cut(s)	189
BspLI	GGNNCC	4 cut(s)	326, 481, 838, 886
BspMAI	CTGCAG	1 cut(s)	165
BspPI	GGATC	1 cut(s)	293
BspQI	GCTCTTC	1 cut(s)	30
BspT104I	TTCGAA	1 cut(s)	60
BspT107I	GGYRCC	1 cut(s)	884
BspTNI	GGTCTC	1 cut(s)	360
BsrGI	TGTACA	1 cut(s)	813
BsrI	ACTGG	2 cut(s)	531, 744
BssECI	CCNNGG	2 cut(s)	361, 671
BssMI	GATC	3 cut(s)	108, 298, 747
BssNI	GRCGYC	1 cut(s)	885
Bst2UI	CCWGG	2 cut(s)	283, 673
Bst4CI	ACNGT	1 cut(s)	146
Bst6I	CTCTTC	1 cut(s)	30
BstACI	GRCGYC	1 cut(s)	885
BstAUI	TGTACA	1 cut(s)	813
BstBI	TTCGAA	1 cut(s)	60
BstC8I	GCNNGC	3 cut(s)	165, 253, 570
BstDEI	CTNAG	1 cut(s)	266
BstF5I	GGATG	1 cut(s)	681
BstFNI	CGCG	1 cut(s)	189
BstH2I	RGCGCY	1 cut(s)	888
BstHHI	GCGC	2 cut(s)	189, 887
BstKTI	GATC	3 cut(s)	111, 301, 750
BstMAI	GTCTC	2 cut(s)	360, 398
BstMBI	GATC	3 cut(s)	108, 298, 747
BstMWI	GCNNNNNNNGC	1 cut(s)	29
BstNI	CCWGG	2 cut(s)	283, 673
BstSCI	CCNGG	5 cut(s)	231, 281, 361, 369, 671
BstSFI	CTRYAG	2 cut(s)	161, 294
BstUI	CGCG	1 cut(s)	189
BstV1I	GCAGC	1 cut(s)	196
BstX2I	RGATCY	1 cut(s)	298
BstYI	RGATCY	1 cut(s)	298
BsuRI	GGCC	4 cut(s)	167, 236, 807, 839
BtgZI	GCGATG	1 cut(s)	861
BtsCI	GGATG	1 cut(s)	681
BtsI	GCAGTG	1 cut(s)	158
BtsIMutI	CAGTG	2 cut(s)	158, 737
Cac8I	GCNNGC	3 cut(s)	165, 253, 570
CfoI	GCGC	2 cut(s)	189, 887
Cfr13I	GGNCC	3 cut(s)	68, 479, 837
CsiI	ACCWGGT	1 cut(s)	281
Csp6I	GTAC	3 cut(s)	172, 655, 814
CspCI	CAANNNNNGTGG	4 cut(s)	679, 714, 829, 864
CviQI	GTAC	3 cut(s)	172, 655, 814
DdeI	CTNAG	1 cut(s)	266
DinI	GGCGCC	1 cut(s)	886
DpnI	GATC	3 cut(s)	110, 300, 749
DpnII	GATC	3 cut(s)	108, 298, 747
EaeI	YGGCCR	2 cut(s)	234, 805
Eam1104I	CTCTTC	1 cut(s)	30
EarI	CTCTTC	1 cut(s)	30
EciI	GGCGGA	1 cut(s)	745
Eco24I	GRGCYC	1 cut(s)	438
Eco31I	GGTCTC	1 cut(s)	360
Eco32I	GATATC	1 cut(s)	78
Eco47I	GGWCC	2 cut(s)	68, 479
Eco88I	CYCGRG	1 cut(s)	302
EcoRII	CCWGG	2 cut(s)	281, 671
EcoRV	GATATC	1 cut(s)	78
EcoT38I	GRGCYC	1 cut(s)	438
EgeI	GGCGCC	1 cut(s)	886
EheI	GGCGCC	1 cut(s)	886
FaiI	YATR	6 cut(s)	53, 100, 215, 414, 566, 724
FbaI	TGATCA	1 cut(s)	108
Fnu4HI	GCNGC	2 cut(s)	185, 190
FokI	GGATG	1 cut(s)	688
FriOI	GRGCYC	1 cut(s)	438
Fsp4HI	GCNGC	2 cut(s)	185, 190
FspBI	CTAG	3 cut(s)	389, 537, 614
GlaI	GCGC	2 cut(s)	188, 886
GluI	GCNGC	2 cut(s)	185, 190
GsuI	CTGGAG	1 cut(s)	643
HaeII	RGCGCY	1 cut(s)	888
HaeIII	GGCC	4 cut(s)	167, 236, 807, 839
HapII	CCGG	7 cut(s)	29, 71, 233, 363, 370, 477, 503
HhaI	GCGC	2 cut(s)	189, 887
Hin1I	GRCGYC	1 cut(s)	885
Hin6I	GCGC	2 cut(s)	187, 885
HinP1I	GCGC	2 cut(s)	187, 885
HincII	GTYRAC	2 cut(s)	687, 705
HindII	GTYRAC	2 cut(s)	687, 705
HinfI	GANTC	2 cut(s)	559, 701
HpaII	CCGG	7 cut(s)	29, 71, 233, 363, 370, 477, 503
HphI	GGTGA	1 cut(s)	271
Hpy166II	GTNNAC	3 cut(s)	158, 687, 705
Hpy188I	TCNGA	1 cut(s)	136
Hpy188III	TCNNGA	5 cut(s)	302, 427, 488, 537, 619
Hpy8I	GTNNAC	3 cut(s)	158, 687, 705
HpyAV	CCTTC	1 cut(s)	67
HpyCH4III	ACNGT	1 cut(s)	146
HpyCH4V	TGCA	3 cut(s)	163, 255, 851
HpyF10VI	GCNNNNNNNGC	1 cut(s)	29
HpyF3I	CTNAG	1 cut(s)	266
Hsp92I	GRCGYC	1 cut(s)	885
HspAI	GCGC	2 cut(s)	187, 885
KasI	GGCGCC	1 cut(s)	884
Ksp22I	TGATCA	1 cut(s)	108
Kzo9I	GATC	3 cut(s)	108, 298, 747
LguI	GCTCTTC	1 cut(s)	30
LmnI	GCTCC	2 cut(s)	330, 668
Lsp1109I	GCAGC	1 cut(s)	196
MabI	ACCWGGT	1 cut(s)	281
MaeI	CTAG	3 cut(s)	389, 537, 614
MaeIII	GTNAC	1 cut(s)	728
MalI	GATC	3 cut(s)	110, 300, 749
MboI	GATC	3 cut(s)	108, 298, 747
MboII	GAAGA	7 cut(s)	17, 356, 370, 436, 559, 562, 654
MflI	RGATCY	1 cut(s)	298
MhlI	GDGCHC	1 cut(s)	438
MlsI	TGGCCA	1 cut(s)	807
MluCI	AATT	4 cut(s)	48, 63, 88, 792
MluNI	TGGCCA	1 cut(s)	807
Mly113I	GGCGCC	1 cut(s)	885
MlyI	GAGTC	1 cut(s)	710
MmeI	TCCRAC	2 cut(s)	690, 769
MnlI	CCTC	3 cut(s)	235, 499, 675
Mox20I	TGGCCA	1 cut(s)	807
MscI	TGGCCA	1 cut(s)	807
MslI	CAYNNNNRTG	2 cut(s)	333, 828
Msp20I	TGGCCA	1 cut(s)	807
MspI	CCGG	7 cut(s)	29, 71, 233, 363, 370, 477, 503
MspR9I	CCNGG	5 cut(s)	233, 283, 363, 371, 673
Mva1269I	GAATGC	1 cut(s)	205
MvaI	CCWGG	2 cut(s)	283, 673
MvnI	CGCG	1 cut(s)	189
MwoI	GCNNNNNNNGC	1 cut(s)	29
NarI	GGCGCC	1 cut(s)	885
NciI	CCSGG	3 cut(s)	233, 363, 371
NdeII	GATC	3 cut(s)	108, 298, 747
NlaIV	GGNNCC	4 cut(s)	326, 481, 838, 886
NmeAIII	GCCGAG	1 cut(s)	181
NspV	TTCGAA	1 cut(s)	60
PciSI	GCTCTTC	1 cut(s)	30
PctI	GAATGC	1 cut(s)	205
PfeI	GAWTC	1 cut(s)	559
PflFI	GACNNNGTC	1 cut(s)	682
PkrI	GCNGC	2 cut(s)	186, 191
PleI	GAGTC	1 cut(s)	709
PluTI	GGCGCC	1 cut(s)	888
PpsI	GAGTC	1 cut(s)	709
PsiI	TTATAA	1 cut(s)	53
Psp6I	CCWGG	2 cut(s)	281, 671
PspGI	CCWGG	2 cut(s)	281, 671
PspN4I	GGNNCC	4 cut(s)	326, 481, 838, 886
PspPI	GGNCC	3 cut(s)	68, 479, 837
PstI	CTGCAG	1 cut(s)	165
PsuI	RGATCY	1 cut(s)	298
PsyI	GACNNNGTC	1 cut(s)	682
RsaI	GTAC	3 cut(s)	173, 656, 815
RsaNI	GTAC	3 cut(s)	172, 655, 814
RseI	CAYNNNNRTG	2 cut(s)	333, 828
SapI	GCTCTTC	1 cut(s)	30
SatI	GCNGC	2 cut(s)	185, 190
Sau3AI	GATC	3 cut(s)	108, 298, 747
Sau96I	GGNCC	3 cut(s)	68, 479, 837
ScaI	AGTACT	1 cut(s)	656
SchI	GAGTC	1 cut(s)	710
ScrFI	CCNGG	5 cut(s)	233, 283, 363, 371, 673
SduI	GDGCHC	1 cut(s)	438
SetI	ASST	9 cut(s)	59, 220, 272, 284, 390, 536, 665, 686, 699
SexAI	ACCWGGT	1 cut(s)	281
SfcI	CTRYAG	2 cut(s)	161, 294
SfoI	GGCGCC	1 cut(s)	886
SfuI	TTCGAA	1 cut(s)	60
SinI	GGWCC	2 cut(s)	68, 479
SmiMI	CAYNNNNRTG	2 cut(s)	333, 828
SmlI	CTYRAG	2 cut(s)	650, 698
SmoI	CTYRAG	2 cut(s)	650, 698
Sse9I	AATT	4 cut(s)	48, 63, 88, 792
SsiI	CCGC	4 cut(s)	189, 249, 500, 756
SspDI	GGCGCC	1 cut(s)	884
SspMI	CTAG	3 cut(s)	389, 537, 614
StyD4I	CCNGG	5 cut(s)	231, 281, 361, 369, 671
TaaI	ACNGT	1 cut(s)	146
TaqI	TCGA	4 cut(s)	60, 438, 557, 633
TaqII	GACCGA	1 cut(s)	583
TasI	AATT	4 cut(s)	48, 63, 88, 792
TatI	WGTACW	2 cut(s)	654, 813
TauI	GCSGC	1 cut(s)	192
TfiI	GAWTC	1 cut(s)	559
TscAI	CASTG	2 cut(s)	165, 744
TseI	GCWGC	1 cut(s)	184
TspDTI	ATGAA	3 cut(s)	370, 435, 864
TspGWI	ACGGA	1 cut(s)	416
TspRI	CASTG	2 cut(s)	165, 744
Tth111I	GACNNNGTC	1 cut(s)	682
VpaK11BI	GGWCC	2 cut(s)	68, 479
XapI	RAATTY	1 cut(s)	88
XbaI	TCTAGA	1 cut(s)	536
XspI	CTAG	3 cut(s)	389, 537, 614
ZrmI	AGTACT	1 cut(s)	656

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.