Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0010855

Physical Location & Seq

Genomic Coordinates Forward (+)

5334032 .. 5334499

Gene Structure 468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG074900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGAGCAGAGAAGAAAACGTAGGGAGAAAGATGGCGACGAGGAAATGGACAAGAGCGGAGGAGGAGGAGGGAGGAGGAAGAAGACAGCGCAGCAGGTGATCAAAGCCGACAAGGAAGAAGCGGTGGCGGCGACGGAGGAGGAGGTGGAGGAATTCTACGCCATAGTCAGGAGGATGCAGGCGGCGGTCAAGTACTTCGAGAAAGGTAATAACAACAATATTCACACCAATATAAACAATGGCGGGGATCTGGTGCGGTGGAGAGTGGCGCTGGAGTCTACTCCGCCGGTGGTTCCCGTCGCCGATGATGATGTTGCTGACGATCATGTAAAGAGTGCGACTTCCGATCATGTAAAGAGTGCGACTTCCGATGATCATCGTGAGCAGTTGGTTGTTCAACTATCTGATAATAATGGAGTTCTGGACTTGAACGAGGCGCCGGGTGAGGAGGCGGAGACTACTACGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

155

Amino Acids

17.17

Weight (kDa)

4.85

Isoelectric Point (pI)

59.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010855)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g12270
malus_domestica	MD03G1063500.v1.1
pyrus_communis	pycom03g05080
rosa_chinensis	RchiOBHm_Chr4g0400301 RchiOBHm_Chr4g0400381 RchiOBHm_Chr7g0185301
rosa_laevigata	RLG00000002261 RLG00000004924 RLG00000021536
rosa_multiflora	Rmu_sc0001873.1_g000008 Rmu_sc0005425.1_g000001 Rmu_sc0012343.1_g000001 Rmu_sc0023720.1_g000001
rosa_roxburghii	Rroxscaffold_3G00269070
rosa_rugosa	Rorug02G0514500 Rorug02G0514900 Rorug06G0467600
rosa_samantha	Rh7AG074900 Rh7CG073400 Rh7DG072900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	85
Acc36I	ACCTGC	1 cut(s)	85
AccB1I	GGYRCC	1 cut(s)	436
AccBSI	CCGCTC	1 cut(s)	57
AccI	GTMKAC	1 cut(s)	278
AciI	CCGC	9 cut(s)	57, 122, 128, 182, 185, 243, 256, 284, 452
AclWI	GGATC	1 cut(s)	255
AcsI	RAATTY	1 cut(s)	152
AcyI	GRCGYC	1 cut(s)	437
AfaI	GTAC	1 cut(s)	194
AfiI	CCNNNNNNNGG	1 cut(s)	168
AgsI	TTSAA	2 cut(s)	398, 430
Alw26I	GTCTC	1 cut(s)	449
AlwI	GGATC	1 cut(s)	255
ApeKI	GCWGC	1 cut(s)	91
ApoI	RAATTY	1 cut(s)	152
AspLEI	GCGC	3 cut(s)	91, 271, 439
AsuC2I	CCSGG	1 cut(s)	441
AsuHPI	GGTGA	2 cut(s)	109, 455
BanI	GGYRCC	1 cut(s)	436
BbsI	GAAGAC	1 cut(s)	89
BbvI	GCAGC	1 cut(s)	103
BccI	CCATC	1 cut(s)	26
BclI	TGATCA	2 cut(s)	99, 373
BcnI	CCSGG	1 cut(s)	441
BcoDI	GTCTC	1 cut(s)	449
BfoI	RGCGCY	2 cut(s)	272, 440
BfuAI	ACCTGC	1 cut(s)	85
BisI	GCNGC	3 cut(s)	92, 129, 183
BlsI	GCNGC	3 cut(s)	93, 130, 184
BmcAI	AGTACT	1 cut(s)	194
Bme1390I	CCNGG	1 cut(s)	441
BmiI	GGNNCC	2 cut(s)	294, 438
BmrFI	CCNGG	1 cut(s)	441
BmsI	GCATC	1 cut(s)	165
BpiI	GAAGAC	1 cut(s)	89
BpmI	CTGGAG	1 cut(s)	293
BpuMI	CCSGG	1 cut(s)	441
BsaAI	YACGTR	1 cut(s)	465
BsaBI	GATNNNNATC	1 cut(s)	375
BsaHI	GRCGYC	1 cut(s)	437
Bsc4I	CCNNNNNNNGG	1 cut(s)	168
Bse118I	RCCGGY	1 cut(s)	286
Bse8I	GATNNNNATC	1 cut(s)	375
BseGI	GGATG	1 cut(s)	180
BseJI	GATNNNNATC	1 cut(s)	375
BseLI	CCNNNNNNNGG	1 cut(s)	168
BseRI	GAGGAG	7 cut(s)	75, 78, 81, 88, 152, 155, 461
BseXI	GCAGC	1 cut(s)	103
BshNI	GGYRCC	1 cut(s)	436
BsiSI	CCGG	2 cut(s)	287, 440
BslI	CCNNNNNNNGG	1 cut(s)	168
BsmAI	GTCTC	1 cut(s)	449
Bsp143I	GATC	5 cut(s)	99, 247, 322, 346, 373
BspACI	CCGC	9 cut(s)	57, 122, 128, 182, 185, 243, 256, 284, 452
BspLI	GGNNCC	2 cut(s)	294, 438
BspMI	ACCTGC	1 cut(s)	85
BspPI	GGATC	1 cut(s)	255
BspT107I	GGYRCC	1 cut(s)	436
BsrBI	CCGCTC	1 cut(s)	57
BsrFI	RCCGGY	1 cut(s)	286
BssAI	RCCGGY	1 cut(s)	286
BssMI	GATC	5 cut(s)	99, 247, 322, 346, 373
BssNI	GRCGYC	1 cut(s)	437
BstACI	GRCGYC	1 cut(s)	437
BstBAI	YACGTR	1 cut(s)	465
BstC8I	GCNNGC	1 cut(s)	180
BstF5I	GGATG	1 cut(s)	180
BstH2I	RGCGCY	2 cut(s)	272, 440
BstHHI	GCGC	3 cut(s)	91, 271, 439
BstKTI	GATC	5 cut(s)	102, 250, 325, 349, 376
BstMAI	GTCTC	1 cut(s)	449
BstMBI	GATC	5 cut(s)	99, 247, 322, 346, 373
BstMWI	GCNNNNNNNGC	1 cut(s)	128
BstSCI	CCNGG	1 cut(s)	439
BstSNI	TACGTA	1 cut(s)	465
BstV1I	GCAGC	1 cut(s)	103
BstV2I	GAAGAC	1 cut(s)	89
BstX2I	RGATCY	1 cut(s)	247
BstYI	RGATCY	1 cut(s)	247
BtsCI	GGATG	1 cut(s)	180
BveI	ACCTGC	1 cut(s)	85
Cac8I	GCNNGC	1 cut(s)	180
CfoI	GCGC	3 cut(s)	91, 271, 439
Cfr10I	RCCGGY	1 cut(s)	286
Csp6I	GTAC	1 cut(s)	193
CviAII	CATG	2 cut(s)	326, 350
CviJI	RGCY	1 cut(s)	107
CviKI_1	RGCY	1 cut(s)	107
CviQI	GTAC	1 cut(s)	193
DinI	GGCGCC	1 cut(s)	438
DpnI	GATC	5 cut(s)	101, 249, 324, 348, 375
DpnII	GATC	5 cut(s)	99, 247, 322, 346, 373
EciI	GGCGGA	2 cut(s)	273, 467
Eco105I	TACGTA	1 cut(s)	465
EcoRI	GAATTC	1 cut(s)	152
EgeI	GGCGCC	1 cut(s)	438
EheI	GGCGCC	1 cut(s)	438
FaeI	CATG	2 cut(s)	329, 353
FaiI	YATR	4 cut(s)	164, 233, 327, 351
FatI	CATG	2 cut(s)	325, 349
FauI	CCCGC	1 cut(s)	236
FbaI	TGATCA	2 cut(s)	99, 373
FblI	GTMKAC	1 cut(s)	278
Fnu4HI	GCNGC	3 cut(s)	92, 129, 183
FokI	GGATG	1 cut(s)	187
Fsp4HI	GCNGC	3 cut(s)	92, 129, 183
GlaI	GCGC	3 cut(s)	90, 270, 438
GluI	GCNGC	3 cut(s)	92, 129, 183
GsuI	CTGGAG	1 cut(s)	293
HaeII	RGCGCY	2 cut(s)	272, 440
HapII	CCGG	2 cut(s)	287, 440
HhaI	GCGC	3 cut(s)	91, 271, 439
Hin1I	GRCGYC	1 cut(s)	437
Hin1II	CATG	2 cut(s)	329, 353
Hin6I	GCGC	3 cut(s)	89, 269, 437
HinP1I	GCGC	3 cut(s)	89, 269, 437
HinfI	GANTC	1 cut(s)	275
HpaII	CCGG	2 cut(s)	287, 440
HphI	GGTGA	2 cut(s)	109, 455
Hpy166II	GTNNAC	1 cut(s)	279
Hpy188I	TCNGA	3 cut(s)	346, 370, 406
Hpy188III	TCNNGA	4 cut(s)	169, 199, 380, 422
Hpy8I	GTNNAC	1 cut(s)	279
Hpy99I	CGWCG	3 cut(s)	41, 136, 302
HpyCH4IV	ACGT	2 cut(s)	19, 464
HpyCH4V	TGCA	1 cut(s)	178
HpyF10VI	GCNNNNNNNGC	1 cut(s)	128
HpySE526I	ACGT	2 cut(s)	19, 464
Hsp92I	GRCGYC	1 cut(s)	437
Hsp92II	CATG	2 cut(s)	329, 353
HspAI	GCGC	3 cut(s)	89, 269, 437
KasI	GGCGCC	1 cut(s)	436
Ksp22I	TGATCA	2 cut(s)	99, 373
Kzo9I	GATC	5 cut(s)	99, 247, 322, 346, 373
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	8 cut(s)	80, 154, 164, 236, 257, 300, 407, 453
Lsp1109I	GCAGC	1 cut(s)	103
LweI	GCATC	1 cut(s)	165
MaeII	ACGT	2 cut(s)	19, 464
MalI	GATC	5 cut(s)	101, 249, 324, 348, 375
MbiI	CCGCTC	1 cut(s)	57
MboI	GATC	5 cut(s)	99, 247, 322, 346, 373
MboII	GAAGA	4 cut(s)	24, 91, 94, 128
MflI	RGATCY	1 cut(s)	247
MluCI	AATT	1 cut(s)	152
Mly113I	GGCGCC	1 cut(s)	437
MlyI	GAGTC	1 cut(s)	284
MspI	CCGG	2 cut(s)	287, 440
MspR9I	CCNGG	1 cut(s)	441
MwoI	GCNNNNNNNGC	1 cut(s)	128
NarI	GGCGCC	1 cut(s)	437
NciI	CCSGG	1 cut(s)	441
NdeII	GATC	5 cut(s)	99, 247, 322, 346, 373
NlaIII	CATG	2 cut(s)	329, 353
NlaIV	GGNNCC	2 cut(s)	294, 438
PaqCI	CACCTGC	1 cut(s)	85
PkrI	GCNGC	3 cut(s)	93, 130, 184
PleI	GAGTC	1 cut(s)	283
PluTI	GGCGCC	1 cut(s)	440
PpsI	GAGTC	1 cut(s)	283
Ppu21I	YACGTR	1 cut(s)	465
PspN4I	GGNNCC	2 cut(s)	294, 438
PsuI	RGATCY	1 cut(s)	247
RsaI	GTAC	1 cut(s)	194
RsaNI	GTAC	1 cut(s)	193
SatI	GCNGC	3 cut(s)	92, 129, 183
Sau3AI	GATC	5 cut(s)	99, 247, 322, 346, 373
ScaI	AGTACT	1 cut(s)	194
SchI	GAGTC	1 cut(s)	284
ScrFI	CCNGG	1 cut(s)	441
SetI	ASST	5 cut(s)	22, 99, 147, 208, 467
SfaNI	GCATC	1 cut(s)	165
SfoI	GGCGCC	1 cut(s)	438
SgrAI	CRCCGGYG	1 cut(s)	286
SnaBI	TACGTA	1 cut(s)	465
Sse9I	AATT	1 cut(s)	152
SsiI	CCGC	9 cut(s)	57, 122, 128, 182, 185, 243, 256, 284, 452
SspDI	GGCGCC	1 cut(s)	436
SspI	AATATT	1 cut(s)	220
StyD4I	CCNGG	1 cut(s)	439
TaiI	ACGT	2 cut(s)	22, 467
TaqI	TCGA	1 cut(s)	198
TasI	AATT	1 cut(s)	152
TatI	WGTACW	1 cut(s)	192
TauI	GCSGC	2 cut(s)	131, 185
TseI	GCWGC	1 cut(s)	91
TspGWI	ACGGA	1 cut(s)	149
XapI	RAATTY	1 cut(s)	152
XmiI	GTMKAC	1 cut(s)	278
ZrmI	AGTACT	1 cut(s)	194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.