RchiOBHm_Chr7g0185301

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0010855
Physical Location & Seq
Reverse (-)
5471916 .. 5472663
748 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16535

Sequence Viewer

Length: 468 bp
ATGGAGCAGAGAAGAAAACGTAGGGAGAAAGATGGCGACGAGGAAATGGACAAGAGCGGAGGAGGAGGAGGGAGGAGGAAGAAGACAGCGCAGCAGGTGATCAAAGCCGACAAGGAAGAAGCGGTGGCGGCGACGGAGGAGGAGGTGGAGGAATTCTACGCCATAGTCAGGAGGATGCAGGCGGCGGTCAAGTACTTCGAGAAAGGTAATAACAACAATATTCACGCCAATATAAACAATGGCGGGGATCTGGTGCGGTGGAGAGTGGCGCTGGAGTCTACTCCGCCGGTGGTTCCCGTCGCCGATGATGATGTTGCTGACGATCATGTAAAGAGTGCGACTTCCGATCATGTAAAGAGTGCGACTTCCGATGATCATCGTGAGCAGTTGGTTGTTCAACTAGCTGATAATAATGGAGTTCTGGACTTGAACGAGGCGCCGGGTGAGGAGGCGGAGACTACTACGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

155

Amino Acids

17.13

Weight (kDa)

4.85

Isoelectric Point (pI)

60.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 85
Acc36I ACCTGC 1 cut(s) 85
AccB1I GGYRCC 1 cut(s) 436
AccBSI CCGCTC 1 cut(s) 57
AccI GTMKAC 1 cut(s) 278
AciI CCGC 9 cut(s) 57, 122, 128, 182, 185, 243, 256, 284, 452
AclWI GGATC 1 cut(s) 255
AcsI RAATTY 1 cut(s) 152
AcyI GRCGYC 1 cut(s) 437
AfaI GTAC 1 cut(s) 194
AfiI CCNNNNNNNGG 1 cut(s) 168
AgsI TTSAA 2 cut(s) 398, 430
AluBI AGCT 1 cut(s) 404
AluI AGCT 1 cut(s) 404
Alw26I GTCTC 1 cut(s) 449
AlwI GGATC 1 cut(s) 255
ApeKI GCWGC 1 cut(s) 91
ApoI RAATTY 1 cut(s) 152
AspLEI GCGC 3 cut(s) 91, 271, 439
AsuC2I CCSGG 1 cut(s) 441
AsuHPI GGTGA 2 cut(s) 109, 455
BanI GGYRCC 1 cut(s) 436
BbsI GAAGAC 1 cut(s) 89
BbvI GCAGC 1 cut(s) 103
BccI CCATC 1 cut(s) 26
BclI TGATCA 2 cut(s) 99, 373
BcnI CCSGG 1 cut(s) 441
BcoDI GTCTC 1 cut(s) 449
BfaI CTAG 1 cut(s) 401
BfoI RGCGCY 2 cut(s) 272, 440
BfuAI ACCTGC 1 cut(s) 85
BisI GCNGC 3 cut(s) 92, 129, 183
BlsI GCNGC 3 cut(s) 93, 130, 184
BmcAI AGTACT 1 cut(s) 194
Bme1390I CCNGG 1 cut(s) 441
BmiI GGNNCC 2 cut(s) 294, 438
BmrFI CCNGG 1 cut(s) 441
BmsI GCATC 1 cut(s) 165
BpiI GAAGAC 1 cut(s) 89
BpmI CTGGAG 1 cut(s) 293
BpuMI CCSGG 1 cut(s) 441
BsaAI YACGTR 1 cut(s) 465
BsaBI GATNNNNATC 1 cut(s) 375
BsaHI GRCGYC 1 cut(s) 437
Bsc4I CCNNNNNNNGG 1 cut(s) 168
Bse118I RCCGGY 1 cut(s) 286
Bse8I GATNNNNATC 1 cut(s) 375
BseGI GGATG 1 cut(s) 180
BseJI GATNNNNATC 1 cut(s) 375
BseLI CCNNNNNNNGG 1 cut(s) 168
BseRI GAGGAG 7 cut(s) 75, 78, 81, 88, 152, 155, 461
BseXI GCAGC 1 cut(s) 103
BshNI GGYRCC 1 cut(s) 436
BsiSI CCGG 2 cut(s) 287, 440
BslI CCNNNNNNNGG 1 cut(s) 168
BsmAI GTCTC 1 cut(s) 449
Bsp143I GATC 5 cut(s) 99, 247, 322, 346, 373
BspACI CCGC 9 cut(s) 57, 122, 128, 182, 185, 243, 256, 284, 452
BspLI GGNNCC 2 cut(s) 294, 438
BspMI ACCTGC 1 cut(s) 85
BspPI GGATC 1 cut(s) 255
BspT107I GGYRCC 1 cut(s) 436
BsrBI CCGCTC 1 cut(s) 57
BsrFI RCCGGY 1 cut(s) 286
BssAI RCCGGY 1 cut(s) 286
BssMI GATC 5 cut(s) 99, 247, 322, 346, 373
BssNI GRCGYC 1 cut(s) 437
BstACI GRCGYC 1 cut(s) 437
BstBAI YACGTR 1 cut(s) 465
BstC8I GCNNGC 1 cut(s) 180
BstF5I GGATG 1 cut(s) 180
BstH2I RGCGCY 2 cut(s) 272, 440
BstHHI GCGC 3 cut(s) 91, 271, 439
BstKTI GATC 5 cut(s) 102, 250, 325, 349, 376
BstMAI GTCTC 1 cut(s) 449
BstMBI GATC 5 cut(s) 99, 247, 322, 346, 373
BstMWI GCNNNNNNNGC 1 cut(s) 128
BstSCI CCNGG 1 cut(s) 439
BstSNI TACGTA 1 cut(s) 465
BstV1I GCAGC 1 cut(s) 103
BstV2I GAAGAC 1 cut(s) 89
BstX2I RGATCY 1 cut(s) 247
BstYI RGATCY 1 cut(s) 247
BtsCI GGATG 1 cut(s) 180
BveI ACCTGC 1 cut(s) 85
Cac8I GCNNGC 1 cut(s) 180
CfoI GCGC 3 cut(s) 91, 271, 439
Cfr10I RCCGGY 1 cut(s) 286
Csp6I GTAC 1 cut(s) 193
CviAII CATG 2 cut(s) 326, 350
CviJI RGCY 2 cut(s) 107, 404
CviKI_1 RGCY 2 cut(s) 107, 404
CviQI GTAC 1 cut(s) 193
DinI GGCGCC 1 cut(s) 438
DpnI GATC 5 cut(s) 101, 249, 324, 348, 375
DpnII GATC 5 cut(s) 99, 247, 322, 346, 373
EciI GGCGGA 2 cut(s) 273, 467
Eco105I TACGTA 1 cut(s) 465
EcoRI GAATTC 1 cut(s) 152
EgeI GGCGCC 1 cut(s) 438
EheI GGCGCC 1 cut(s) 438
FaeI CATG 2 cut(s) 329, 353
FaiI YATR 4 cut(s) 164, 233, 327, 351
FatI CATG 2 cut(s) 325, 349
FauI CCCGC 1 cut(s) 236
FbaI TGATCA 2 cut(s) 99, 373
FblI GTMKAC 1 cut(s) 278
Fnu4HI GCNGC 3 cut(s) 92, 129, 183
FokI GGATG 1 cut(s) 187
Fsp4HI GCNGC 3 cut(s) 92, 129, 183
FspBI CTAG 1 cut(s) 401
GlaI GCGC 3 cut(s) 90, 270, 438
GluI GCNGC 3 cut(s) 92, 129, 183
GsuI CTGGAG 1 cut(s) 293
HaeII RGCGCY 2 cut(s) 272, 440
HapII CCGG 2 cut(s) 287, 440
HhaI GCGC 3 cut(s) 91, 271, 439
Hin1I GRCGYC 1 cut(s) 437
Hin1II CATG 2 cut(s) 329, 353
Hin6I GCGC 3 cut(s) 89, 269, 437
HinP1I GCGC 3 cut(s) 89, 269, 437
HinfI GANTC 1 cut(s) 275
HpaII CCGG 2 cut(s) 287, 440
HphI GGTGA 2 cut(s) 109, 455
Hpy166II GTNNAC 1 cut(s) 279
Hpy188I TCNGA 2 cut(s) 346, 370
Hpy188III TCNNGA 4 cut(s) 169, 199, 380, 422
Hpy8I GTNNAC 1 cut(s) 279
Hpy99I CGWCG 3 cut(s) 41, 136, 302
HpyCH4IV ACGT 2 cut(s) 19, 464
HpyCH4V TGCA 1 cut(s) 178
HpyF10VI GCNNNNNNNGC 1 cut(s) 128
HpySE526I ACGT 2 cut(s) 19, 464
Hsp92I GRCGYC 1 cut(s) 437
Hsp92II CATG 2 cut(s) 329, 353
HspAI GCGC 3 cut(s) 89, 269, 437
KasI GGCGCC 1 cut(s) 436
Ksp22I TGATCA 2 cut(s) 99, 373
Kzo9I GATC 5 cut(s) 99, 247, 322, 346, 373
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 8 cut(s) 80, 154, 164, 236, 257, 300, 407, 453
Lsp1109I GCAGC 1 cut(s) 103
LweI GCATC 1 cut(s) 165
MaeI CTAG 1 cut(s) 401
MaeII ACGT 2 cut(s) 19, 464
MalI GATC 5 cut(s) 101, 249, 324, 348, 375
MbiI CCGCTC 1 cut(s) 57
MboI GATC 5 cut(s) 99, 247, 322, 346, 373
MboII GAAGA 4 cut(s) 24, 91, 94, 128
MflI RGATCY 1 cut(s) 247
MluCI AATT 1 cut(s) 152
Mly113I GGCGCC 1 cut(s) 437
MlyI GAGTC 1 cut(s) 284
MspI CCGG 2 cut(s) 287, 440
MspR9I CCNGG 1 cut(s) 441
MwoI GCNNNNNNNGC 1 cut(s) 128
NarI GGCGCC 1 cut(s) 437
NciI CCSGG 1 cut(s) 441
NdeII GATC 5 cut(s) 99, 247, 322, 346, 373
NlaIII CATG 2 cut(s) 329, 353
NlaIV GGNNCC 2 cut(s) 294, 438
PaqCI CACCTGC 1 cut(s) 85
PkrI GCNGC 3 cut(s) 93, 130, 184
PleI GAGTC 1 cut(s) 283
PluTI GGCGCC 1 cut(s) 440
PpsI GAGTC 1 cut(s) 283
Ppu21I YACGTR 1 cut(s) 465
PspN4I GGNNCC 2 cut(s) 294, 438
PsuI RGATCY 1 cut(s) 247
RsaI GTAC 1 cut(s) 194
RsaNI GTAC 1 cut(s) 193
SatI GCNGC 3 cut(s) 92, 129, 183
Sau3AI GATC 5 cut(s) 99, 247, 322, 346, 373
ScaI AGTACT 1 cut(s) 194
SchI GAGTC 1 cut(s) 284
ScrFI CCNGG 1 cut(s) 441
SetI ASST 6 cut(s) 22, 99, 147, 208, 406, 467
SfaNI GCATC 1 cut(s) 165
SfoI GGCGCC 1 cut(s) 438
SgrAI CRCCGGYG 1 cut(s) 286
SnaBI TACGTA 1 cut(s) 465
Sse9I AATT 1 cut(s) 152
SsiI CCGC 9 cut(s) 57, 122, 128, 182, 185, 243, 256, 284, 452
SspDI GGCGCC 1 cut(s) 436
SspI AATATT 1 cut(s) 220
SspMI CTAG 1 cut(s) 401
StyD4I CCNGG 1 cut(s) 439
TaiI ACGT 2 cut(s) 22, 467
TaqI TCGA 1 cut(s) 198
TasI AATT 1 cut(s) 152
TatI WGTACW 1 cut(s) 192
TauI GCSGC 2 cut(s) 131, 185
TseI GCWGC 1 cut(s) 91
TspGWI ACGGA 1 cut(s) 149
XapI RAATTY 1 cut(s) 152
XmiI GTMKAC 1 cut(s) 278
XspI CTAG 1 cut(s) 401
ZrmI AGTACT 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.