Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001873.1

Orthogroup ID

OG0010855

Physical Location & Seq

Genomic Coordinates Forward (+)

31266 .. 32527

Gene Structure 1262 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001873.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

atgattgtcattgttgcaggtgtactttccagcatactagtgttctttgtcctcagatttctgatcatcaagcaaagatggaaagctgaggactccagagctagaaacaagccggtgaagtctatcatgacccttggatcacctttattaccttatttgtgtcgttacttttcgctggtagagatcaaggctgccaccaaaaacttcaatgatactttcattattagagctggaggatttggcaacatctacaaaggatgcatcggtggtggggttcctccagttgcaatcaaacgactgaaaccagtcatcttaggagtggcgctggagtctactccgccggtggttcccgtcgtcgatgatgatgatgatcctgacgatcatgtagagagtgcgacttccgatgatcatcgtgtgcacttggttgctgaactagctgacaataatggagttctcgacttgaacgaggcgtcgggtgaggaggcggagactactacggagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009723 GO:0009725 GO:0009741 GO:0009787 GO:0009788 GO:0009791 GO:0009856 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010118 GO:0010483 GO:0010646 GO:0010648 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0022622 GO:0023051 GO:0023057 GO:0030054 GO:0030308 GO:0030312 GO:0032501 GO:0032502 GO:0033993 GO:0036211 GO:0040008 GO:0042221 GO:0043170 GO:0043207 GO:0043412 GO:0043680 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044426 GO:0044462 GO:0044464 GO:0044703 GO:0044706 GO:0045926 GO:0046777 GO:0048364 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051703 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Malectin_like Pkinase_Tyr

Protein Analysis

167

Amino Acids

18.15

Weight (kDa)

5.08

Isoelectric Point (pI)

42.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010855)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g12270
malus_domestica	MD03G1063500.v1.1
pyrus_communis	pycom03g05080
rosa_chinensis	RchiOBHm_Chr4g0400301 RchiOBHm_Chr4g0400381 RchiOBHm_Chr7g0185301
rosa_laevigata	RLG00000002261 RLG00000004924 RLG00000021536
rosa_multiflora	Rmu_sc0001873.1_g000008 Rmu_sc0005425.1_g000001 Rmu_sc0012343.1_g000001 Rmu_sc0023720.1_g000001
rosa_roxburghii	Rroxscaffold_3G00269070
rosa_rugosa	Rorug02G0514500 Rorug02G0514900 Rorug06G0467600
rosa_samantha	Rh7AG074900 Rh7CG073400 Rh7DG072900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	8
Acc36I	ACCTGC	1 cut(s)	8
AccI	GTMKAC	1 cut(s)	332
AciI	CCGC	2 cut(s)	338, 485
AclWI	GGATC	2 cut(s)	145, 365
AcyI	GRCGYC	1 cut(s)	470
AfaI	GTAC	1 cut(s)	24
AgsI	TTSAA	2 cut(s)	208, 463
AhlI	ACTAGT	1 cut(s)	37
AluBI	AGCT	4 cut(s)	86, 101, 230, 437
AluI	AGCT	4 cut(s)	86, 101, 230, 437
Alw21I	GWGCWC	1 cut(s)	420
Alw26I	GTCTC	1 cut(s)	482
Alw44I	GTGCAC	1 cut(s)	416
AlwI	GGATC	2 cut(s)	145, 365
ApaLI	GTGCAC	1 cut(s)	416
ApeKI	GCWGC	1 cut(s)	191
AspLEI	GCGC	1 cut(s)	325
AsuHPI	GGTGA	3 cut(s)	127, 132, 488
BaeGI	GKGCMC	1 cut(s)	420
Bbv12I	GWGCWC	1 cut(s)	420
BbvCI	CCTCAGC	1 cut(s)	87
BbvI	GCAGC	1 cut(s)	178
BccI	CCATC	1 cut(s)	72
BclI	TGATCA	2 cut(s)	63, 406
BcoDI	GTCTC	1 cut(s)	482
BcuI	ACTAGT	1 cut(s)	37
BfaI	CTAG	3 cut(s)	38, 102, 434
BfoI	RGCGCY	1 cut(s)	326
BfuAI	ACCTGC	1 cut(s)	8
BisI	GCNGC	1 cut(s)	192
BlsI	GCNGC	1 cut(s)	193
BmiI	GGNNCC	2 cut(s)	276, 348
BmsI	GCATC	2 cut(s)	248, 270
BpmI	CTGGAG	4 cut(s)	79, 252, 264, 347
Bpu10I	CCTNAGC	1 cut(s)	87
BsaBI	GATNNNNATC	2 cut(s)	369, 408
BsaHI	GRCGYC	1 cut(s)	470
BsaJI	CCNNGG	1 cut(s)	133
Bse118I	RCCGGY	2 cut(s)	112, 340
Bse1I	ACTGG	2 cut(s)	281, 305
Bse8I	GATNNNNATC	2 cut(s)	369, 408
BseDI	CCNNGG	1 cut(s)	133
BseGI	GGATG	1 cut(s)	263
BseJI	GATNNNNATC	2 cut(s)	369, 408
BseMII	CTCAG	2 cut(s)	67, 78
BseNI	ACTGG	2 cut(s)	281, 305
BseRI	GAGGAG	1 cut(s)	494
BseSI	GKGCMC	1 cut(s)	420
BseXI	GCAGC	1 cut(s)	178
BsiHKAI	GWGCWC	1 cut(s)	420
BsiSI	CCGG	2 cut(s)	113, 341
BsmAI	GTCTC	1 cut(s)	482
Bsp1286I	GDGCHC	1 cut(s)	420
Bsp143I	GATC	6 cut(s)	63, 137, 183, 370, 379, 406
BspACI	CCGC	2 cut(s)	338, 485
BspCNI	CTCAG	2 cut(s)	66, 79
BspHI	TCATGA	1 cut(s)	126
BspLI	GGNNCC	2 cut(s)	276, 348
BspMI	ACCTGC	1 cut(s)	8
BspPI	GGATC	2 cut(s)	145, 365
BsrFI	RCCGGY	2 cut(s)	112, 340
BsrI	ACTGG	2 cut(s)	281, 305
BssAI	RCCGGY	2 cut(s)	112, 340
BssECI	CCNNGG	1 cut(s)	133
BssMI	GATC	6 cut(s)	63, 137, 183, 370, 379, 406
BssNI	GRCGYC	1 cut(s)	470
BssT1I	CCWWGG	1 cut(s)	133
BstACI	GRCGYC	1 cut(s)	470
BstDEI	CTNAG	3 cut(s)	53, 87, 313
BstF5I	GGATG	1 cut(s)	263
BstH2I	RGCGCY	1 cut(s)	326
BstHHI	GCGC	1 cut(s)	325
BstKTI	GATC	6 cut(s)	66, 140, 186, 373, 382, 409
BstMAI	GTCTC	1 cut(s)	482
BstMBI	GATC	6 cut(s)	63, 137, 183, 370, 379, 406
BstMWI	GCNNNNNNNGC	1 cut(s)	434
BstSLI	GKGCMC	1 cut(s)	420
BstV1I	GCAGC	1 cut(s)	178
BtsCI	GGATG	1 cut(s)	263
BveI	ACCTGC	1 cut(s)	8
CciI	TCATGA	1 cut(s)	126
CfoI	GCGC	1 cut(s)	325
Cfr10I	RCCGGY	2 cut(s)	112, 340
CseI	GACGC	1 cut(s)	459
Csp6I	GTAC	1 cut(s)	23
CviAII	CATG	2 cut(s)	127, 383
CviJI	RGCY	6 cut(s)	86, 101, 112, 191, 230, 437
CviKI_1	RGCY	6 cut(s)	86, 101, 112, 191, 230, 437
CviQI	GTAC	1 cut(s)	23
DdeI	CTNAG	3 cut(s)	53, 87, 313
DpnI	GATC	6 cut(s)	65, 139, 185, 372, 381, 408
DpnII	GATC	6 cut(s)	63, 137, 183, 370, 379, 406
EciI	GGCGGA	2 cut(s)	327, 500
Eco130I	CCWWGG	1 cut(s)	133
EcoT14I	CCWWGG	1 cut(s)	133
EcoT22I	ATGCAT	1 cut(s)	263
ErhI	CCWWGG	1 cut(s)	133
FaeI	CATG	2 cut(s)	130, 386
FaiI	YATR	3 cut(s)	35, 128, 384
FatI	CATG	2 cut(s)	126, 382
FbaI	TGATCA	2 cut(s)	63, 406
FblI	GTMKAC	1 cut(s)	332
Fnu4HI	GCNGC	1 cut(s)	192
FokI	GGATG	1 cut(s)	270
Fsp4HI	GCNGC	1 cut(s)	192
FspBI	CTAG	3 cut(s)	38, 102, 434
GlaI	GCGC	1 cut(s)	324
GluI	GCNGC	1 cut(s)	192
GsuI	CTGGAG	4 cut(s)	79, 252, 264, 347
HaeII	RGCGCY	1 cut(s)	326
HapII	CCGG	2 cut(s)	113, 341
HgaI	GACGC	1 cut(s)	459
HhaI	GCGC	1 cut(s)	325
Hin1I	GRCGYC	1 cut(s)	470
Hin1II	CATG	2 cut(s)	130, 386
Hin6I	GCGC	1 cut(s)	323
HinP1I	GCGC	1 cut(s)	323
HinfI	GANTC	2 cut(s)	92, 329
HpaII	CCGG	2 cut(s)	113, 341
HphI	GGTGA	3 cut(s)	127, 132, 488
Hpy166II	GTNNAC	3 cut(s)	23, 333, 418
Hpy188I	TCNGA	3 cut(s)	56, 63, 403
Hpy188III	TCNNGA	4 cut(s)	96, 127, 374, 455
Hpy8I	GTNNAC	3 cut(s)	23, 333, 418
Hpy99I	CGWCG	3 cut(s)	356, 359, 475
HpyCH4V	TGCA	4 cut(s)	17, 261, 287, 418
HpyF10VI	GCNNNNNNNGC	1 cut(s)	434
HpyF3I	CTNAG	3 cut(s)	53, 87, 313
Hsp92I	GRCGYC	1 cut(s)	470
Hsp92II	CATG	2 cut(s)	130, 386
HspAI	GCGC	1 cut(s)	323
Ksp22I	TGATCA	2 cut(s)	63, 406
Kzo9I	GATC	6 cut(s)	63, 137, 183, 370, 379, 406
Lsp1109I	GCAGC	1 cut(s)	178
LweI	GCATC	2 cut(s)	248, 270
MaeI	CTAG	3 cut(s)	38, 102, 434
MaeIII	GTNAC	1 cut(s)	164
MalI	GATC	6 cut(s)	65, 139, 185, 372, 381, 408
MboI	GATC	6 cut(s)	63, 137, 183, 370, 379, 406
MhlI	GDGCHC	1 cut(s)	420
MlyI	GAGTC	2 cut(s)	86, 338
MnlI	CCTC	7 cut(s)	62, 82, 227, 288, 460, 472, 475
Mph1103I	ATGCAT	1 cut(s)	263
MslI	CAYNNNNRTG	1 cut(s)	38
MspI	CCGG	2 cut(s)	113, 341
MwoI	GCNNNNNNNGC	1 cut(s)	434
NdeII	GATC	6 cut(s)	63, 137, 183, 370, 379, 406
NlaIII	CATG	2 cut(s)	130, 386
NlaIV	GGNNCC	2 cut(s)	276, 348
NsiI	ATGCAT	1 cut(s)	263
PagI	TCATGA	1 cut(s)	126
PaqCI	CACCTGC	1 cut(s)	8
PcsI	WCGNNNNNNNCGW	1 cut(s)	462
PkrI	GCNGC	1 cut(s)	193
PleI	GAGTC	2 cut(s)	86, 337
PpsI	GAGTC	2 cut(s)	86, 337
PspN4I	GGNNCC	2 cut(s)	276, 348
RsaI	GTAC	1 cut(s)	24
RsaNI	GTAC	1 cut(s)	23
RseI	CAYNNNNRTG	1 cut(s)	38
SatI	GCNGC	1 cut(s)	192
Sau3AI	GATC	6 cut(s)	63, 137, 183, 370, 379, 406
SchI	GAGTC	2 cut(s)	86, 338
SduI	GDGCHC	1 cut(s)	420
SetI	ASST	7 cut(s)	22, 88, 103, 145, 154, 232, 439
SfaNI	GCATC	2 cut(s)	248, 270
SgrAI	CRCCGGYG	1 cut(s)	340
SmiMI	CAYNNNNRTG	1 cut(s)	38
SpeI	ACTAGT	1 cut(s)	37
SsiI	CCGC	2 cut(s)	338, 485
SspMI	CTAG	3 cut(s)	38, 102, 434
StyI	CCWWGG	1 cut(s)	133
TaqI	TCGA	2 cut(s)	357, 456
TatI	WGTACW	1 cut(s)	22
TseI	GCWGC	1 cut(s)	191
TspDTI	ATGAA	1 cut(s)	208
VneI	GTGCAC	1 cut(s)	416
XmiI	GTMKAC	1 cut(s)	332
XspI	CTAG	3 cut(s)	38, 102, 434
Zsp2I	ATGCAT	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.