RLG00000004924

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0010855
Physical Location & Seq
Forward (+)
63685713 .. 63686782
1070 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004924

Sequence Viewer

Length: 450 bp
ATGGAGCAGAGAAGAAAACGTAGGGAGAAAGACGGCGACGAGGAAATGGACAAGAGCGGAAGAGGAGGAGGAGGGAGGAGGAAGAAGACAGCGCAGCAGGTGATCAAGGCCGACAAGGAAGAAGCGGTGGCTGCGACGGAGGAGGAGGTGGAGGAATTCTACGCCATAGTCAGGAGGATGCAGGCGGCGGTTAAGTACTTTGAGAAAGGTAATAACAACAATATTCACGCCAATATAAACAATGGCGGGGATCTGGTGCGGTGGAGAGTGGCACTGGAGTCTACTCCGCCGGTGATTCCCGTCGCCGATGATGATGATGTTGCTGACGATCATGTAAAGAGTGCGACTTCCGATGATCATCGTGAGCAGTTGGTTGTTCAACTAGCTGACAATAATGGAGTTCTGGACTTGAACGAGGCCCCGGGTGAGGAGGCGGAGACTACTACGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

150

Amino Acids

16.59

Weight (kDa)

4.78

Isoelectric Point (pI)

59.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 88
Acc36I ACCTGC 1 cut(s) 88
AccBSI CCGCTC 1 cut(s) 57
AccI GTMKAC 1 cut(s) 281
AciI CCGC 8 cut(s) 57, 125, 185, 188, 246, 259, 287, 434
AclWI GGATC 1 cut(s) 258
AcsI RAATTY 1 cut(s) 155
AfaI GTAC 1 cut(s) 197
AfiI CCNNNNNNNGG 2 cut(s) 171, 427
AgsI TTSAA 2 cut(s) 380, 412
AluBI AGCT 1 cut(s) 386
AluI AGCT 1 cut(s) 386
Alw26I GTCTC 1 cut(s) 431
AlwI GGATC 1 cut(s) 258
Ama87I CYCGRG 1 cut(s) 421
AoxI GGCC 2 cut(s) 108, 417
ApeKI GCWGC 2 cut(s) 94, 131
ApoI RAATTY 1 cut(s) 155
AspLEI GCGC 1 cut(s) 94
AspS9I GGNCC 1 cut(s) 418
AsuC2I CCSGG 2 cut(s) 422, 423
AsuHPI GGTGA 3 cut(s) 112, 304, 437
AvaI CYCGRG 1 cut(s) 421
BbsI GAAGAC 1 cut(s) 92
BbvI GCAGC 2 cut(s) 106, 118
BceAI ACGGC 1 cut(s) 49
BclI TGATCA 2 cut(s) 102, 355
BcnI CCSGG 2 cut(s) 422, 423
BcoDI GTCTC 1 cut(s) 431
BfaI CTAG 1 cut(s) 383
BfuAI ACCTGC 1 cut(s) 88
BisI GCNGC 3 cut(s) 95, 132, 186
BlsI GCNGC 3 cut(s) 96, 133, 187
BmcAI AGTACT 1 cut(s) 197
Bme1390I CCNGG 2 cut(s) 422, 423
BmeT110I CYCGRG 1 cut(s) 421
BmgT120I GGNCC 1 cut(s) 418
BmiI GGNNCC 1 cut(s) 420
BmrFI CCNGG 2 cut(s) 422, 423
BmsI GCATC 1 cut(s) 168
BpiI GAAGAC 1 cut(s) 92
BpmI CTGGAG 1 cut(s) 296
BpuMI CCSGG 2 cut(s) 422, 423
BsaAI YACGTR 1 cut(s) 447
BsaBI GATNNNNATC 1 cut(s) 357
BsaJI CCNNGG 2 cut(s) 420, 421
Bsc4I CCNNNNNNNGG 2 cut(s) 171, 427
Bse118I RCCGGY 1 cut(s) 289
Bse1I ACTGG 1 cut(s) 279
Bse8I GATNNNNATC 1 cut(s) 357
BseDI CCNNGG 2 cut(s) 420, 421
BseGI GGATG 1 cut(s) 183
BseJI GATNNNNATC 1 cut(s) 357
BseLI CCNNNNNNNGG 2 cut(s) 171, 427
BseNI ACTGG 1 cut(s) 279
BseRI GAGGAG 7 cut(s) 78, 81, 84, 91, 155, 158, 443
BseXI GCAGC 2 cut(s) 106, 118
BshFI GGCC 2 cut(s) 110, 419
BsiHKCI CYCGRG 1 cut(s) 421
BsiSI CCGG 2 cut(s) 290, 422
BslI CCNNNNNNNGG 2 cut(s) 171, 427
BsmAI GTCTC 1 cut(s) 431
BsnI GGCC 2 cut(s) 110, 419
BsoBI CYCGRG 1 cut(s) 421
Bsp143I GATC 4 cut(s) 102, 250, 328, 355
BspACI CCGC 8 cut(s) 57, 125, 185, 188, 246, 259, 287, 434
BspANI GGCC 2 cut(s) 110, 419
BspLI GGNNCC 1 cut(s) 420
BspMI ACCTGC 1 cut(s) 88
BspPI GGATC 1 cut(s) 258
BsrBI CCGCTC 1 cut(s) 57
BsrFI RCCGGY 1 cut(s) 289
BsrI ACTGG 1 cut(s) 279
BssAI RCCGGY 1 cut(s) 289
BssECI CCNNGG 2 cut(s) 420, 421
BssMI GATC 4 cut(s) 102, 250, 328, 355
Bst6I CTCTTC 1 cut(s) 55
BstBAI YACGTR 1 cut(s) 447
BstC8I GCNNGC 1 cut(s) 183
BstF5I GGATG 1 cut(s) 183
BstHHI GCGC 1 cut(s) 94
BstKTI GATC 4 cut(s) 105, 253, 331, 358
BstMAI GTCTC 1 cut(s) 431
BstMBI GATC 4 cut(s) 102, 250, 328, 355
BstMWI GCNNNNNNNGC 1 cut(s) 131
BstSCI CCNGG 2 cut(s) 420, 421
BstSNI TACGTA 1 cut(s) 447
BstV1I GCAGC 2 cut(s) 106, 118
BstV2I GAAGAC 1 cut(s) 92
BstX2I RGATCY 1 cut(s) 250
BstYI RGATCY 1 cut(s) 250
BsuRI GGCC 2 cut(s) 110, 419
BtsCI GGATG 1 cut(s) 183
BtsIMutI CAGTG 1 cut(s) 272
BveI ACCTGC 1 cut(s) 88
Cac8I GCNNGC 1 cut(s) 183
CfoI GCGC 1 cut(s) 94
Cfr10I RCCGGY 1 cut(s) 289
Cfr13I GGNCC 1 cut(s) 418
Cfr9I CCCGGG 1 cut(s) 421
Csp6I GTAC 1 cut(s) 196
CviAII CATG 1 cut(s) 332
CviJI RGCY 4 cut(s) 110, 131, 386, 419
CviKI_1 RGCY 4 cut(s) 110, 131, 386, 419
CviQI GTAC 1 cut(s) 196
DpnI GATC 4 cut(s) 104, 252, 330, 357
DpnII GATC 4 cut(s) 102, 250, 328, 355
Eam1104I CTCTTC 1 cut(s) 55
EarI CTCTTC 1 cut(s) 55
EciI GGCGGA 2 cut(s) 276, 449
Eco105I TACGTA 1 cut(s) 447
Eco88I CYCGRG 1 cut(s) 421
EcoO109I RGGNCCY 1 cut(s) 418
EcoRI GAATTC 1 cut(s) 155
FaeI CATG 1 cut(s) 335
FaiI YATR 3 cut(s) 167, 236, 333
FatI CATG 1 cut(s) 331
FauI CCCGC 1 cut(s) 239
FbaI TGATCA 2 cut(s) 102, 355
FblI GTMKAC 1 cut(s) 281
Fnu4HI GCNGC 3 cut(s) 95, 132, 186
FokI GGATG 1 cut(s) 190
Fsp4HI GCNGC 3 cut(s) 95, 132, 186
FspBI CTAG 1 cut(s) 383
GlaI GCGC 1 cut(s) 93
GluI GCNGC 3 cut(s) 95, 132, 186
GsuI CTGGAG 1 cut(s) 296
HaeIII GGCC 2 cut(s) 110, 419
HapII CCGG 2 cut(s) 290, 422
HhaI GCGC 1 cut(s) 94
Hin1II CATG 1 cut(s) 335
Hin6I GCGC 1 cut(s) 92
HinP1I GCGC 1 cut(s) 92
HinfI GANTC 2 cut(s) 278, 295
HpaII CCGG 2 cut(s) 290, 422
HphI GGTGA 3 cut(s) 112, 304, 437
Hpy166II GTNNAC 1 cut(s) 282
Hpy188I TCNGA 1 cut(s) 352
Hpy188III TCNNGA 3 cut(s) 172, 362, 404
Hpy8I GTNNAC 1 cut(s) 282
Hpy99I CGWCG 3 cut(s) 41, 139, 305
HpyCH4IV ACGT 2 cut(s) 19, 446
HpyCH4V TGCA 1 cut(s) 181
HpyF10VI GCNNNNNNNGC 1 cut(s) 131
HpySE526I ACGT 2 cut(s) 19, 446
Hsp92II CATG 1 cut(s) 335
HspAI GCGC 1 cut(s) 92
Ksp22I TGATCA 2 cut(s) 102, 355
Kzo9I GATC 4 cut(s) 102, 250, 328, 355
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 8 cut(s) 83, 157, 167, 239, 260, 303, 389, 435
Lsp1109I GCAGC 2 cut(s) 106, 118
LweI GCATC 1 cut(s) 168
MaeI CTAG 1 cut(s) 383
MaeII ACGT 2 cut(s) 19, 446
MalI GATC 4 cut(s) 104, 252, 330, 357
MbiI CCGCTC 1 cut(s) 57
MboI GATC 4 cut(s) 102, 250, 328, 355
MboII GAAGA 5 cut(s) 24, 72, 94, 97, 131
MflI RGATCY 1 cut(s) 250
MluCI AATT 1 cut(s) 155
MlyI GAGTC 1 cut(s) 287
MseI TTAA 1 cut(s) 192
MspI CCGG 2 cut(s) 290, 422
MspR9I CCNGG 2 cut(s) 422, 423
MwoI GCNNNNNNNGC 1 cut(s) 131
NciI CCSGG 2 cut(s) 422, 423
NdeII GATC 4 cut(s) 102, 250, 328, 355
NlaIII CATG 1 cut(s) 335
NlaIV GGNNCC 1 cut(s) 420
PaqCI CACCTGC 1 cut(s) 88
PfeI GAWTC 1 cut(s) 295
PkrI GCNGC 3 cut(s) 96, 133, 187
PleI GAGTC 1 cut(s) 286
PpsI GAGTC 1 cut(s) 286
Ppu21I YACGTR 1 cut(s) 447
PspN4I GGNNCC 1 cut(s) 420
PspPI GGNCC 1 cut(s) 418
PsuI RGATCY 1 cut(s) 250
RsaI GTAC 1 cut(s) 197
RsaNI GTAC 1 cut(s) 196
SaqAI TTAA 1 cut(s) 192
SatI GCNGC 3 cut(s) 95, 132, 186
Sau3AI GATC 4 cut(s) 102, 250, 328, 355
Sau96I GGNCC 1 cut(s) 418
ScaI AGTACT 1 cut(s) 197
SchI GAGTC 1 cut(s) 287
ScrFI CCNGG 2 cut(s) 422, 423
SetI ASST 6 cut(s) 22, 102, 150, 211, 388, 449
SfaNI GCATC 1 cut(s) 168
SgrAI CRCCGGYG 1 cut(s) 289
SmaI CCCGGG 1 cut(s) 423
SnaBI TACGTA 1 cut(s) 447
Sse9I AATT 1 cut(s) 155
SsiI CCGC 8 cut(s) 57, 125, 185, 188, 246, 259, 287, 434
SspI AATATT 1 cut(s) 223
SspMI CTAG 1 cut(s) 383
StyD4I CCNGG 2 cut(s) 420, 421
TaiI ACGT 2 cut(s) 22, 449
TasI AATT 1 cut(s) 155
TatI WGTACW 1 cut(s) 195
TauI GCSGC 1 cut(s) 188
TfiI GAWTC 1 cut(s) 295
Tru1I TTAA 1 cut(s) 192
Tru9I TTAA 1 cut(s) 192
TscAI CASTG 1 cut(s) 279
TseI GCWGC 2 cut(s) 94, 131
TspGWI ACGGA 1 cut(s) 152
TspMI CCCGGG 1 cut(s) 421
TspRI CASTG 1 cut(s) 279
XapI RAATTY 1 cut(s) 155
XmaI CCCGGG 1 cut(s) 421
XmiI GTMKAC 1 cut(s) 281
XspI CTAG 1 cut(s) 383
ZrmI AGTACT 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.