Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012343.1

Orthogroup ID

OG0010855

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 7421

Gene Structure 7421 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012343.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 805 bp

gcgtggaacagaactcaaggactctagctccagccacaagatgacgaggccagccatgaccagtaggtcacatttaccctcttatttgtgtcgttacttttcactggcagagatcaaagccgccaccaaatacttcgatgatactttcattattggagctgggggatttggcaacgtatacaaaggattcatcgatggtggaggcactccagttgcaatcaaacggctgaaagccatgtcatcacaagggtcccgcgagtttaggacggaaattgaaatgctctctcgactccgccactgccatttggtgtctcttatcggattttgtgccgatgaaggtgagatgatcttggtgtacgattacgtggcacgtgggactcttcgtgaccatctctaccacactgataatccacctcttccatgggaacaacggcttcaaatttgtattggcgcggcgcaaggtttgcactatcttcacacagaacccagccccaatttgttgattccaccgctaattccagtcccaataacacaatctaagcaagatgcaaacctcactaacataaatttcaaccagtatcgtttgattttcgaaatccccaaatttttctatccgattaggtcatttgcgacttctgcctgcagcgcctctctctctcgagtctcgtccctctcttgtacgccgttcctcagttcctctcagaactaccccagccccaatccaatcccaaaaacaacaatcgatcagaacctcactaacattgatgcgaaccccagccccaatccaatcccagatattgtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009723 GO:0009725 GO:0009741 GO:0009787 GO:0009788 GO:0009791 GO:0009856 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010118 GO:0010483 GO:0010646 GO:0010648 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0022622 GO:0023051 GO:0023057 GO:0030054 GO:0030308 GO:0030312 GO:0032501 GO:0032502 GO:0033993 GO:0036211 GO:0040008 GO:0042221 GO:0043170 GO:0043207 GO:0043412 GO:0043680 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044426 GO:0044462 GO:0044464 GO:0044703 GO:0044706 GO:0045926 GO:0046777 GO:0048364 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051703 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Malectin_like Pkinase_Tyr

Protein Analysis

267

Amino Acids

29.71

Weight (kDa)

8.51

Isoelectric Point (pI)

62.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010855)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g12270
malus_domestica	MD03G1063500.v1.1
pyrus_communis	pycom03g05080
rosa_chinensis	RchiOBHm_Chr4g0400301 RchiOBHm_Chr4g0400381 RchiOBHm_Chr7g0185301
rosa_laevigata	RLG00000002261 RLG00000004924 RLG00000021536
rosa_multiflora	Rmu_sc0001873.1_g000008 Rmu_sc0005425.1_g000001 Rmu_sc0012343.1_g000001 Rmu_sc0023720.1_g000001
rosa_roxburghii	Rroxscaffold_3G00269070
rosa_rugosa	Rorug02G0514500 Rorug02G0514900 Rorug06G0467600
rosa_samantha	Rh7AG074900 Rh7CG073400 Rh7DG072900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	65
AccI	GTMKAC	1 cut(s)	178
AccII	CGCG	2 cut(s)	256, 453
AciI	CCGC	5 cut(s)	121, 254, 293, 453, 510
AcsI	RAATTY	3 cut(s)	439, 566, 603
AcvI	CACGTG	1 cut(s)	372
AfaI	GTAC	2 cut(s)	357, 680
AgsI	TTSAA	3 cut(s)	276, 438, 572
AluBI	AGCT	2 cut(s)	28, 159
AluI	AGCT	2 cut(s)	28, 159
Alw26I	GTCTC	2 cut(s)	316, 668
Ama87I	CYCGRG	1 cut(s)	658
AoxI	GGCC	1 cut(s)	48
ApeKI	GCWGC	1 cut(s)	643
ApoI	RAATTY	3 cut(s)	439, 566, 603
AspLEI	GCGC	3 cut(s)	453, 458, 648
AspS9I	GGNCC	1 cut(s)	250
AsuHPI	GGTGA	1 cut(s)	351
AsuII	TTCGAA	1 cut(s)	592
AvaI	CYCGRG	1 cut(s)	658
AvaII	GGWCC	1 cut(s)	250
BbrPI	CACGTG	1 cut(s)	372
BbvI	GCAGC	1 cut(s)	655
BccI	CCATC	2 cut(s)	189, 397
BceAI	ACGGC	3 cut(s)	240, 447, 668
BcoDI	GTCTC	2 cut(s)	316, 668
BfaI	CTAG	1 cut(s)	25
BfmI	CTRYAG	1 cut(s)	641
BfoI	RGCGCY	1 cut(s)	649
BisI	GCNGC	3 cut(s)	121, 454, 644
BlsI	GCNGC	3 cut(s)	122, 455, 645
Bme18I	GGWCC	1 cut(s)	250
BmeT110I	CYCGRG	1 cut(s)	658
BmgT120I	GGNCC	1 cut(s)	250
BmiI	GGNNCC	2 cut(s)	251, 252
BmsI	GCATC	2 cut(s)	536, 755
BpmI	CTGGAG	2 cut(s)	14, 193
Bpu14I	TTCGAA	1 cut(s)	592
Bsa29I	ATCGAT	2 cut(s)	193, 742
BsaAI	YACGTR	2 cut(s)	365, 372
BsaJI	CCNNGG	1 cut(s)	420
BsaXI	ACNNNNNCTCC	2 cut(s)	12, 42
Bse1I	ACTGG	5 cut(s)	61, 109, 210, 519, 575
BseCI	ATCGAT	2 cut(s)	193, 742
BseDI	CCNNGG	1 cut(s)	420
BseMII	CTCAG	2 cut(s)	704, 714
BseNI	ACTGG	5 cut(s)	61, 109, 210, 519, 575
BseXI	GCAGC	1 cut(s)	655
BseYI	CCCAGC	4 cut(s)	159, 486, 711, 774
Bsh1236I	CGCG	2 cut(s)	256, 453
BshFI	GGCC	1 cut(s)	50
BshVI	ATCGAT	2 cut(s)	193, 742
BsiHKCI	CYCGRG	1 cut(s)	658
BslFI	GGGAC	4 cut(s)	236, 389, 507, 653
BsmAI	GTCTC	2 cut(s)	316, 668
BsmFI	GGGAC	4 cut(s)	236, 389, 507, 653
BsnI	GGCC	1 cut(s)	50
BsoBI	CYCGRG	1 cut(s)	658
Bsp119I	TTCGAA	1 cut(s)	592
Bsp143I	GATC	3 cut(s)	112, 346, 743
Bsp19I	CCATGG	1 cut(s)	420
BspACI	CCGC	5 cut(s)	121, 254, 293, 453, 510
BspANI	GGCC	1 cut(s)	50
BspCNI	CTCAG	2 cut(s)	703, 713
BspDI	ATCGAT	2 cut(s)	193, 742
BspFNI	CGCG	2 cut(s)	256, 453
BspLI	GGNNCC	2 cut(s)	251, 252
BspMAI	CTGCAG	1 cut(s)	645
BspT104I	TTCGAA	1 cut(s)	592
BsrI	ACTGG	5 cut(s)	61, 109, 210, 519, 575
BssECI	CCNNGG	1 cut(s)	420
BssMI	GATC	3 cut(s)	112, 346, 743
BssNAI	GTATAC	1 cut(s)	179
BssT1I	CCWWGG	1 cut(s)	420
Bst1107I	GTATAC	1 cut(s)	179
Bst6I	CTCTTC	2 cut(s)	385, 421
BstAPI	GCANNNNNTGC	1 cut(s)	464
BstBAI	YACGTR	2 cut(s)	365, 372
BstBI	TTCGAA	1 cut(s)	592
BstC8I	GCNNGC	2 cut(s)	52, 641
BstDEI	CTNAG	3 cut(s)	538, 690, 700
BstDSI	CCRYGG	1 cut(s)	420
BstFNI	CGCG	2 cut(s)	256, 453
BstH2I	RGCGCY	1 cut(s)	649
BstHHI	GCGC	3 cut(s)	453, 458, 648
BstKTI	GATC	3 cut(s)	115, 349, 746
BstMAI	GTCTC	2 cut(s)	316, 668
BstMBI	GATC	3 cut(s)	112, 346, 743
BstMWI	GCNNNNNNNGC	3 cut(s)	464, 636, 645
BstSFI	CTRYAG	1 cut(s)	641
BstUI	CGCG	2 cut(s)	256, 453
BstV1I	GCAGC	1 cut(s)	655
BstZ17I	GTATAC	1 cut(s)	179
Bsu15I	ATCGAT	2 cut(s)	193, 742
BsuRI	GGCC	1 cut(s)	50
BsuTUI	ATCGAT	2 cut(s)	193, 742
BtgI	CCRYGG	1 cut(s)	420
BtsI	GCAGTG	1 cut(s)	296
BtsIMutI	CAGTG	3 cut(s)	102, 296, 400
Cac8I	GCNNGC	2 cut(s)	52, 641
CfoI	GCGC	3 cut(s)	453, 458, 648
Cfr13I	GGNCC	1 cut(s)	250
ClaI	ATCGAT	2 cut(s)	193, 742
Csp6I	GTAC	2 cut(s)	356, 679
CviAII	CATG	3 cut(s)	56, 236, 421
CviQI	GTAC	2 cut(s)	356, 679
DdeI	CTNAG	3 cut(s)	538, 690, 700
DpnI	GATC	3 cut(s)	114, 348, 745
DpnII	GATC	3 cut(s)	112, 346, 743
DrdI	GACNNNNNNGTC	1 cut(s)	65
DseDI	GACNNNNNNGTC	1 cut(s)	65
Eam1104I	CTCTTC	2 cut(s)	385, 421
EarI	CTCTTC	2 cut(s)	385, 421
EciI	GGCGGA	1 cut(s)	282
Eco130I	CCWWGG	1 cut(s)	420
Eco47I	GGWCC	1 cut(s)	250
Eco72I	CACGTG	1 cut(s)	372
Eco88I	CYCGRG	1 cut(s)	658
EcoO109I	RGGNCCY	1 cut(s)	250
EcoT14I	CCWWGG	1 cut(s)	420
ErhI	CCWWGG	1 cut(s)	420
FaeI	CATG	3 cut(s)	59, 239, 424
FaiI	YATR	5 cut(s)	57, 179, 237, 422, 564
FaqI	GGGAC	4 cut(s)	236, 389, 507, 653
FatI	CATG	3 cut(s)	55, 235, 420
FauI	CCCGC	1 cut(s)	261
FblI	GTMKAC	1 cut(s)	178
Fnu4HI	GCNGC	3 cut(s)	121, 454, 644
Fsp4HI	GCNGC	3 cut(s)	121, 454, 644
FspBI	CTAG	1 cut(s)	25
GlaI	GCGC	3 cut(s)	452, 457, 647
GluI	GCNGC	3 cut(s)	121, 454, 644
GsaI	CCCAGC	4 cut(s)	163, 490, 715, 778
GsuI	CTGGAG	2 cut(s)	14, 193
HaeII	RGCGCY	1 cut(s)	649
HaeIII	GGCC	1 cut(s)	50
HhaI	GCGC	3 cut(s)	453, 458, 648
Hin1II	CATG	3 cut(s)	59, 239, 424
Hin6I	GCGC	3 cut(s)	451, 456, 646
HinP1I	GCGC	3 cut(s)	451, 456, 646
HinfI	GANTC	6 cut(s)	21, 187, 289, 377, 503, 661
HphI	GGTGA	1 cut(s)	351
Hpy166II	GTNNAC	2 cut(s)	179, 356
Hpy188I	TCNGA	4 cut(s)	321, 616, 703, 748
Hpy188III	TCNNGA	3 cut(s)	286, 384, 658
Hpy8I	GTNNAC	2 cut(s)	179, 356
HpyAV	CCTTC	1 cut(s)	330
HpyCH4IV	ACGT	3 cut(s)	175, 364, 371
HpyCH4V	TGCA	4 cut(s)	216, 467, 549, 643
HpyF10VI	GCNNNNNNNGC	3 cut(s)	464, 636, 645
HpyF3I	CTNAG	3 cut(s)	538, 690, 700
HpySE526I	ACGT	3 cut(s)	175, 364, 371
Hsp92II	CATG	3 cut(s)	59, 239, 424
HspAI	GCGC	3 cut(s)	451, 456, 646
KflI	GGGWCCC	1 cut(s)	250
Kzo9I	GATC	3 cut(s)	112, 346, 743
LmnI	GCTCC	2 cut(s)	33, 156
Lsp1109I	GCAGC	1 cut(s)	655
LweI	GCATC	2 cut(s)	536, 755
MaeI	CTAG	1 cut(s)	25
MaeII	ACGT	3 cut(s)	175, 364, 371
MaeIII	GTNAC	3 cut(s)	67, 93, 384
MalI	GATC	3 cut(s)	114, 348, 745
MboI	GATC	3 cut(s)	112, 346, 743
MboII	GAAGA	3 cut(s)	372, 408, 465
MluCI	AATT	6 cut(s)	271, 439, 494, 514, 566, 603
MlyI	GAGTC	4 cut(s)	15, 283, 371, 670
MteI	GCGCNGCGC	1 cut(s)	454
MvnI	CGCG	2 cut(s)	256, 453
MwoI	GCNNNNNNNGC	3 cut(s)	464, 636, 645
NcoI	CCATGG	1 cut(s)	420
NdeII	GATC	3 cut(s)	112, 346, 743
NlaIII	CATG	3 cut(s)	59, 239, 424
NlaIV	GGNNCC	2 cut(s)	251, 252
NmuCI	GTSAC	2 cut(s)	67, 384
NspV	TTCGAA	1 cut(s)	592
PaeR7I	CTCGAG	1 cut(s)	658
PfeI	GAWTC	2 cut(s)	187, 503
PkrI	GCNGC	3 cut(s)	122, 455, 645
PleI	GAGTC	4 cut(s)	15, 283, 371, 669
PmaCI	CACGTG	1 cut(s)	372
PmlI	CACGTG	1 cut(s)	372
PpsI	GAGTC	4 cut(s)	15, 283, 371, 669
Ppu21I	YACGTR	2 cut(s)	365, 372
PpuMI	RGGWCCY	1 cut(s)	250
Psp5II	RGGWCCY	1 cut(s)	250
PspCI	CACGTG	1 cut(s)	372
PspFI	CCCAGC	4 cut(s)	159, 486, 711, 774
PspN4I	GGNNCC	2 cut(s)	251, 252
PspPI	GGNCC	1 cut(s)	250
PspPPI	RGGWCCY	1 cut(s)	250
PstI	CTGCAG	1 cut(s)	645
RsaI	GTAC	2 cut(s)	357, 680
RsaNI	GTAC	2 cut(s)	356, 679
SatI	GCNGC	3 cut(s)	121, 454, 644
Sau3AI	GATC	3 cut(s)	112, 346, 743
Sau96I	GGNCC	1 cut(s)	250
SchI	GAGTC	4 cut(s)	15, 283, 371, 670
SfaNI	GCATC	2 cut(s)	536, 755
SfcI	CTRYAG	1 cut(s)	641
Sfr274I	CTCGAG	1 cut(s)	658
SfuI	TTCGAA	1 cut(s)	592
SinI	GGWCC	1 cut(s)	250
SlaI	CTCGAG	1 cut(s)	658
SmlI	CTYRAG	2 cut(s)	15, 658
SmoI	CTYRAG	2 cut(s)	15, 658
Sse9I	AATT	6 cut(s)	271, 439, 494, 514, 566, 603
SsiI	CCGC	5 cut(s)	121, 254, 293, 453, 510
SspMI	CTAG	1 cut(s)	25
StyI	CCWWGG	1 cut(s)	420
TaiI	ACGT	3 cut(s)	178, 367, 374
TaqI	TCGA	6 cut(s)	136, 193, 287, 592, 659, 742
TasI	AATT	6 cut(s)	271, 439, 494, 514, 566, 603
TauI	GCSGC	2 cut(s)	123, 456
TfiI	GAWTC	2 cut(s)	187, 503
TscAI	CASTG	3 cut(s)	109, 303, 407
TseFI	GTSAC	2 cut(s)	67, 384
TseI	GCWGC	1 cut(s)	643
Tsp45I	GTSAC	2 cut(s)	67, 384
TspDTI	ATGAA	3 cut(s)	137, 179, 349
TspGWI	ACGGA	1 cut(s)	282
TspRI	CASTG	3 cut(s)	109, 303, 407
VpaK11BI	GGWCC	1 cut(s)	250
XapI	RAATTY	3 cut(s)	439, 566, 603
XcmI	CCANNNNNNNNNTGG	1 cut(s)	418
XhoI	CTCGAG	1 cut(s)	658
XmiI	GTMKAC	1 cut(s)	178
XspI	CTAG	1 cut(s)	25

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.