Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0004799

Physical Location & Seq

Genomic Coordinates Reverse (-)

32155506 .. 32156474

Gene Structure 969 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1235700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGTTTGGAAGAAGGAATACTTGGATTTAATCTTGGTTCCAACTGGGCTGCTAATCATGCTTTGCTACCATCTTCTCCTTCTGTATAGGTACCTAAGACATCCTGAAACTACAGTCATTGGCAATGAAAACCACTGCAGAAAAGCTTGGGTTGAGAGAATGTTGCAGGTTGATGCAAAGGACAGAGGTATGTCCCTAACTGTAATCTCTAGCACCATAACAGCAGCAAATTGCTTAGCCTCAACCTCTCTAGCCTTAAGCTCTCTCATCGGAGCATGGATTGGAAACACTTCGCACAACACCTTCACGAGCAGTATTACATACGGCGACACAAGTCCTGCGCTAGTTTCAGTCAAATATATTAGCATTCTGACCTGCTTCCTGCTGGCCTTAGCTTCTTTTTTACATTGCATAAGGGACTATGTCCATGCCAATTTCCTCATCAGTATGCCAGACAGTGATATTCCTCAGGAGCATGTCGAGAAGGTGGTGATAAGTGGAGGCTTGTTCTGGACATTGGGGCTCAGGGCTATCTACCTTGCCACTACTTTGTTGCTCTGGATTTTCGGTCCAATTCCAATGTTTGTTTGTTCAGTGACTATGGTGTTGGTTTTGTACAGACTTGATTCAAATTCCACTCCATTGCATCAGTTCCGATCAGTTGGGAGCCGTGATAATATGATAAGGAAAATTGGTGAAGAAAACCACAGAATAGAAAGGGCCACTGAGCAACATGAAAGATCACATATGCATGGAAGCACAACTCAAGAAGCACCACCAACAACTACGAGATTAAATTCAGAGGCAACAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF599

Protein Analysis

272

Amino Acids

30.44

Weight (kDa)

7.19

Isoelectric Point (pI)

32.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF599	PF04654	11 - 213	1.2e-63	Protein of unknown function, DUF599

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004799)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46060
fragaria_vesca	FvH4_3g08420
malus_domestica	MD03G1235700.v1.1 MD05G1308900.v1.1 MD10G1287600.v1.1 MD11G1256800.v1.1
prunus_persica	Prupe.4G173300_v2.0.a1 Prupe.5G016600_v2.0.a1
pyrus_communis	pycom10g24060
rosa_chinensis	RchiOBHm_Chr5g0009451 RchiOBHm_Chr5g0032251
rosa_laevigata	RLG00000031660 RLG00000031663 RLG00000033374
rosa_multiflora	Rmu_sc0002711.1_g000017 Rmu_sc0038269.1_g000002 Rmu_sc0038270.1_g000001 Rmu_sc0038270.1_g000004
rosa_roxburghii	Rroxscaffold_1G00048210 Rroxscaffold_1G00067370
rosa_rugosa	Rorug04G0443200 Rorug05G0130000
rosa_samantha	Rh5AG074200 Rh5AG224000 Rh5BG069900 Rh5BG224700 Rh5CG082400 Rh5DG070300 Rh5DG229200
rosa_wichuraiana	Rw5G006870 Rw5G020420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	157, 383
Acc65I	GGTACC	1 cut(s)	90
AccB1I	GGYRCC	1 cut(s)	90
AcsI	RAATTY	2 cut(s)	631, 796
AfaI	GTAC	2 cut(s)	92, 617
AflII	CTTAAG	1 cut(s)	256
AgsI	TTSAA	1 cut(s)	630
AjuI	GAANNNNNNNTTGG	1 cut(s)	37
AluBI	AGCT	3 cut(s)	146, 261, 395
AluI	AGCT	3 cut(s)	146, 261, 395
AoxI	GGCC	2 cut(s)	387, 720
ApeKI	GCWGC	2 cut(s)	49, 224
ApoI	RAATTY	2 cut(s)	631, 796
Asp700I	GAANNNNTTC	1 cut(s)	289
Asp718I	GGTACC	1 cut(s)	90
AspLEI	GCGC	1 cut(s)	343
AspS9I	GGNCC	2 cut(s)	569, 720
AsuHPI	GGTGA	2 cut(s)	502, 707
AvaII	GGWCC	1 cut(s)	569
AxyI	CCTNAGG	1 cut(s)	468
BanI	GGYRCC	1 cut(s)	90
BanII	GRGCYC	1 cut(s)	525
BarI	GAAGNNNNNNTAC	1 cut(s)	34
BauI	CACGAG	1 cut(s)	307
BbvI	GCAGC	2 cut(s)	36, 236
BccI	CCATC	1 cut(s)	78
BceAI	ACGGC	2 cut(s)	340, 654
BfaI	CTAG	3 cut(s)	210, 251, 344
BfmI	CTRYAG	2 cut(s)	111, 136
BfrI	CTTAAG	1 cut(s)	256
BfuAI	ACCTGC	2 cut(s)	157, 383
BisI	GCNGC	2 cut(s)	50, 225
BlpI	GCTNAGC	1 cut(s)	235
BlsI	GCNGC	2 cut(s)	51, 226
Bme18I	GGWCC	1 cut(s)	569
BmgT120I	GGNCC	2 cut(s)	569, 720
BmiI	GGNNCC	3 cut(s)	39, 92, 668
BmrI	ACTGGG	1 cut(s)	54
BmsI	GCATC	2 cut(s)	163, 655
BmuI	ACTGGG	1 cut(s)	54
BoxI	GACNNNNGTC	1 cut(s)	333
Bpu10I	CCTNAGC	2 cut(s)	391, 524
Bpu1102I	GCTNAGC	1 cut(s)	235
BpuEI	CTTGAG	1 cut(s)	750
Bse1I	ACTGG	1 cut(s)	49
Bse21I	CCTNAGG	1 cut(s)	468
Bse3DI	GCAATG	3 cut(s)	130, 406, 641
BseGI	GGATG	1 cut(s)	100
BseMI	GCAATG	3 cut(s)	130, 406, 641
BseMII	CTCAG	3 cut(s)	482, 538, 717
BseNI	ACTGG	1 cut(s)	49
BseXI	GCAGC	2 cut(s)	36, 236
BshFI	GGCC	2 cut(s)	389, 722
BshNI	GGYRCC	1 cut(s)	90
BslFI	GGGAC	2 cut(s)	178, 431
BsmFI	GGGAC	2 cut(s)	178, 431
BsmI	GAATGC	1 cut(s)	366
BsnI	GGCC	2 cut(s)	389, 722
Bsp1286I	GDGCHC	1 cut(s)	525
Bsp1407I	TGTACA	1 cut(s)	615
Bsp143I	GATC	2 cut(s)	656, 740
Bsp1720I	GCTNAGC	1 cut(s)	235
BspANI	GGCC	2 cut(s)	389, 722
BspCNI	CTCAG	3 cut(s)	481, 537, 718
BspLI	GGNNCC	3 cut(s)	39, 92, 668
BspMAI	CTGCAG	1 cut(s)	140
BspMI	ACCTGC	2 cut(s)	157, 383
BspT107I	GGYRCC	1 cut(s)	90
BspTI	CTTAAG	1 cut(s)	256
BsrDI	GCAATG	3 cut(s)	130, 406, 641
BsrGI	TGTACA	1 cut(s)	615
BsrI	ACTGG	1 cut(s)	49
BssMI	GATC	2 cut(s)	656, 740
BssSI	CACGAG	1 cut(s)	307
Bst2BI	CACGAG	1 cut(s)	307
Bst4CI	ACNGT	3 cut(s)	115, 202, 458
BstAFI	CTTAAG	1 cut(s)	256
BstAUI	TGTACA	1 cut(s)	615
BstC8I	GCNNGC	1 cut(s)	387
BstDEI	CTNAG	6 cut(s)	95, 235, 391, 468, 524, 726
BstF5I	GGATG	1 cut(s)	100
BstHHI	GCGC	1 cut(s)	343
BstKTI	GATC	2 cut(s)	659, 743
BstMBI	GATC	2 cut(s)	656, 740
BstMWI	GCNNNNNNNGC	1 cut(s)	58
BstNSI	RCATGY	1 cut(s)	479
BstPAI	GACNNNNGTC	1 cut(s)	333
BstSFI	CTRYAG	2 cut(s)	111, 136
BstV1I	GCAGC	2 cut(s)	36, 236
Bsu36I	CCTNAGG	1 cut(s)	468
BsuRI	GGCC	2 cut(s)	389, 722
BtsCI	GGATG	1 cut(s)	100
BtsI	GCAGTG	1 cut(s)	133
BtsIMutI	CAGTG	4 cut(s)	133, 463, 600, 723
BveI	ACCTGC	2 cut(s)	157, 383
Cac8I	GCNNGC	1 cut(s)	387
CfoI	GCGC	1 cut(s)	343
Cfr13I	GGNCC	2 cut(s)	569, 720
Csp6I	GTAC	2 cut(s)	91, 616
CviAII	CATG	6 cut(s)	58, 276, 428, 476, 734, 752
CviQI	GTAC	2 cut(s)	91, 616
DdeI	CTNAG	6 cut(s)	95, 235, 391, 468, 524, 726
DpnI	GATC	2 cut(s)	658, 742
DpnII	GATC	2 cut(s)	656, 740
Eco24I	GRGCYC	1 cut(s)	525
Eco47I	GGWCC	1 cut(s)	569
Eco81I	CCTNAGG	1 cut(s)	468
EcoT22I	ATGCAT	1 cut(s)	753
EcoT38I	GRGCYC	1 cut(s)	525
FaeI	CATG	6 cut(s)	61, 279, 431, 479, 737, 755
FalI	AAGNNNNNCTT	1 cut(s)	37
FaqI	GGGAC	2 cut(s)	178, 431
FatI	CATG	6 cut(s)	57, 275, 427, 475, 733, 751
FauNDI	CATATG	1 cut(s)	747
Fnu4HI	GCNGC	2 cut(s)	50, 225
FokI	GGATG	1 cut(s)	87
FriOI	GRGCYC	1 cut(s)	525
Fsp4HI	GCNGC	2 cut(s)	50, 225
FspBI	CTAG	3 cut(s)	210, 251, 344
GlaI	GCGC	1 cut(s)	342
GluI	GCNGC	2 cut(s)	50, 225
HaeIII	GGCC	2 cut(s)	389, 722
HhaI	GCGC	1 cut(s)	343
Hin1II	CATG	6 cut(s)	61, 279, 431, 479, 737, 755
Hin6I	GCGC	1 cut(s)	341
HinP1I	GCGC	1 cut(s)	341
HindIII	AAGCTT	1 cut(s)	144
HinfI	GANTC	1 cut(s)	626
HphI	GGTGA	2 cut(s)	502, 707
Hpy188I	TCNGA	4 cut(s)	272, 372, 656, 802
Hpy188III	TCNNGA	7 cut(s)	104, 307, 470, 481, 511, 559, 767
HpyAV	CCTTC	4 cut(s)	7, 89, 313, 478
HpyCH4III	ACNGT	3 cut(s)	115, 202, 458
HpyCH4V	TGCA	6 cut(s)	138, 166, 176, 411, 646, 751
HpyF10VI	GCNNNNNNNGC	1 cut(s)	58
HpyF3I	CTNAG	6 cut(s)	95, 235, 391, 468, 524, 726
Hsp92II	CATG	6 cut(s)	61, 279, 431, 479, 737, 755
HspAI	GCGC	1 cut(s)	341
KpnI	GGTACC	1 cut(s)	94
Kzo9I	GATC	2 cut(s)	656, 740
LmnI	GCTCC	3 cut(s)	272, 472, 666
Lsp1109I	GCAGC	2 cut(s)	36, 236
LweI	GCATC	2 cut(s)	163, 655
MaeI	CTAG	3 cut(s)	210, 251, 344
MaeIII	GTNAC	1 cut(s)	595
MalI	GATC	2 cut(s)	658, 742
MboI	GATC	2 cut(s)	656, 740
MboII	GAAGA	3 cut(s)	22, 65, 710
MhlI	GDGCHC	1 cut(s)	525
MluCI	AATT	6 cut(s)	229, 433, 573, 631, 690, 796
MmeI	TCCRAC	1 cut(s)	65
MnlI	CCTC	7 cut(s)	179, 250, 256, 449, 477, 494, 796
Mph1103I	ATGCAT	1 cut(s)	753
MroXI	GAANNNNTTC	1 cut(s)	289
MseI	TTAA	4 cut(s)	29, 257, 794, 814
MslI	CAYNNNNRTG	2 cut(s)	446, 750
MspCI	CTTAAG	1 cut(s)	256
Mva1269I	GAATGC	1 cut(s)	366
MwoI	GCNNNNNNNGC	1 cut(s)	58
NdeI	CATATG	1 cut(s)	747
NdeII	GATC	2 cut(s)	656, 740
NlaIII	CATG	6 cut(s)	61, 279, 431, 479, 737, 755
NlaIV	GGNNCC	3 cut(s)	39, 92, 668
NmuCI	GTSAC	1 cut(s)	595
NsiI	ATGCAT	1 cut(s)	753
NspI	RCATGY	1 cut(s)	479
PctI	GAATGC	1 cut(s)	366
PdmI	GAANNNNTTC	1 cut(s)	289
PfeI	GAWTC	1 cut(s)	626
PflFI	GACNNNGTC	1 cut(s)	422
PkrI	GCNGC	2 cut(s)	51, 226
PshAI	GACNNNNGTC	1 cut(s)	333
PspN4I	GGNNCC	3 cut(s)	39, 92, 668
PspPI	GGNCC	2 cut(s)	569, 720
PstI	CTGCAG	1 cut(s)	140
PsyI	GACNNNGTC	1 cut(s)	422
RsaI	GTAC	2 cut(s)	92, 617
RsaNI	GTAC	2 cut(s)	91, 616
RseI	CAYNNNNRTG	2 cut(s)	446, 750
SaqAI	TTAA	4 cut(s)	29, 257, 794, 814
SatI	GCNGC	2 cut(s)	50, 225
Sau3AI	GATC	2 cut(s)	656, 740
Sau96I	GGNCC	2 cut(s)	569, 720
SduI	GDGCHC	1 cut(s)	525
SfaNI	GCATC	2 cut(s)	163, 655
SfcI	CTRYAG	2 cut(s)	111, 136
SinI	GGWCC	1 cut(s)	569
SmiMI	CAYNNNNRTG	2 cut(s)	446, 750
SmlI	CTYRAG	2 cut(s)	256, 765
SmoI	CTYRAG	2 cut(s)	256, 765
Sse9I	AATT	6 cut(s)	229, 433, 573, 631, 690, 796
SspMI	CTAG	3 cut(s)	210, 251, 344
TaaI	ACNGT	3 cut(s)	115, 202, 458
TaqI	TCGA	1 cut(s)	480
TaqII	GACCGA	1 cut(s)	557
TasI	AATT	6 cut(s)	229, 433, 573, 631, 690, 796
TatI	WGTACW	1 cut(s)	615
TfiI	GAWTC	1 cut(s)	626
Tru1I	TTAA	4 cut(s)	29, 257, 794, 814
Tru9I	TTAA	4 cut(s)	29, 257, 794, 814
TscAI	CASTG	4 cut(s)	140, 463, 600, 730
TseFI	GTSAC	1 cut(s)	595
TseI	GCWGC	2 cut(s)	49, 224
Tsp45I	GTSAC	1 cut(s)	595
TspDTI	ATGAA	2 cut(s)	141, 750
TspRI	CASTG	4 cut(s)	140, 463, 600, 730
Tth111I	GACNNNGTC	1 cut(s)	422
Vha464I	CTTAAG	1 cut(s)	256
VpaK11BI	GGWCC	1 cut(s)	569
XapI	RAATTY	2 cut(s)	631, 796
XceI	RCATGY	1 cut(s)	479
XmnI	GAANNNNTTC	1 cut(s)	289
XspI	CTAG	3 cut(s)	210, 251, 344
Zsp2I	ATGCAT	1 cut(s)	753

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.