Rorug05G0130000

Protein of unknown function, DUF599

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
11557558 .. 11559252
1695 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0130000.1

Sequence Viewer

Length: 1602 bp
ATGGCCTTAGTACTAGCAATGCTCTCAATGTATTCAATCCTTGGAGTGATATCACCAGTTTCATGCGCTACAAGTTCATCCTTAGTTGAAACCACTTTTCTCCAATGCCTTTCAAACCATTCTCAGTCCTCTAATCCAATATCTGGAGTCGTTTACACCTCCAACAATGCCAATTTCTCATCCGTCCTGAATTCTTATGTGAGAAATCTCAGATTTTCGACTCCCACAACCCCGAAACCGCTGCTAATTGTGGCGGCGAAGAACTATTCCCATGTTCAAGCCACTGTTGTTTGTGCCAAAAGTGTAGGCTTGGAGATCAGAATAAGAAGTGGTGGTCATGACTATGAGGGCCTATCATATGTCTCCAACAAGCCCTTTATTGTTCTTGACATGTTTAATCTCCGGTCCATCAATATTGATCTGGCTGATGAGAGTGCTTGGGTACAATCTGGTGCAACTCTTGGAGAAATTTACTATGCGATTTCTGCAAAGAGCAAAGTCCATGGATTCCCTGCTGGTGTATGCCTTACTCTTGGTGCTGGTGGACACTTCACAGGAGGTGGGTATGGTAACATGATGAGAAAATATGGTCTCTCTGTGGACAACATTGTTGATGCACAAATTGTGAATGTGAATGGTGAGATCCTCGACAGGAAATCAATGGGAGAAGACCTCTTTTGGGCCATAAGAGGAGGTGGTGCAGCAAGTTTTGGAGTCATTCTTGCTTGGAAGATCAAGTTGGTTAAGGTTCCTGAGAAGGTGACGGTGTTCCAGGTCGAAAGGACATTAGAACAAGGTGCAACAGACATTGTTGTGCAGTGGCAAAAAGTTGCTGATAATATAGAAAATGATCTGTTCATAAGAGTGATGCTGTTACCAGGGAATGGAAGCAGAGAAGGTGAAAAGACAATCACGGCCACTTTTGTTTCCTTGTTCCTGGGGGATTCTGTAAGGCTTCTGAGGCTGCTGAATCAAAGCTTGCCTCAATTGGGTTTGCAGCAGAAGGATTGCATCGAAATGAGCTGGGTTGAATCAATTCTGTTTTGGGCTAGCTACCCTATTGGGACTTCCCTTGATGTTTTGCTCAGTAGGGTTCCAAAGGGACTAACATTCCTGAAGCGGAAATCAGATTATGTGCAGGAACCGATTTCAAAGGCAGATTTGGAAGTTTTGTGGAAAGTGATGATAGAAATTGGTGATGGTGGAATGCTGTGGAATCCTTATGGAGGAAAAATGAGTGAGATTTCAGCCACTGAAACTCCATTTCCACATAGAGCAGGCAACATATTCAAGATCCAATATTCATTTAACTGGAAAGATGGAGAGCTTGAGACTACCAACAGGTACTTAAATTTGACTAGACAACTTCATGAGGCAATGACTCCTCATGTGTCCAAGAATCCAAGGGAGGCTTTTCTCAACTACCGGGATGTCGACATTGGAACCAATACAGAGGGTAAATACAAGGAAGGAGAAGTGTATGGGATTAAGTACTTCAAGCACAATTTTGGAAGATTAGTTCGGATTAAAACAAAGGTAGATCCTGATAATTTCTTTAGAAATGAACAGAGCATTCCAACTCTTCCGCCCCAAGTATTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

533

Amino Acids

59.11

Weight (kDa)

8.37

Isoelectric Point (pI)

34.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_4 PF01565 80 - 216 1.1e-22 FAD binding domain
BBE PF08031 471 - 526 1.3e-19 Berberine and berberine like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 143, 884
AccI GTMKAC 1 cut(s) 1434
AciI CCGC 4 cut(s) 239, 254, 1120, 1586
AclWI GGATC 3 cut(s) 637, 1288, 1535
AcoI YGGCCR 1 cut(s) 915
AcsI RAATTY 3 cut(s) 190, 468, 1351
AcuI CTGAAG 1 cut(s) 1136
AfaI GTAC 4 cut(s) 12, 444, 1346, 1493
AfiI CCNNNNNNNGG 5 cut(s) 143, 679, 884, 989, 1226
AflIII ACRYGT 1 cut(s) 390
AgsI TTSAA 8 cut(s) 36, 89, 114, 278, 1031, 1152, 1291, 1498
AjnI CCWGG 3 cut(s) 771, 877, 936
AjuI GAANNNNNNNTTGG 2 cut(s) 722, 754
AloI GAACNNNNNNTCC 2 cut(s) 1503, 1535
AluBI AGCT 4 cut(s) 978, 1023, 1053, 1327
AluI AGCT 4 cut(s) 978, 1023, 1053, 1327
Alw26I GTCTC 3 cut(s) 367, 596, 1325
AlwI GGATC 3 cut(s) 637, 1288, 1535
AlwNI CAGNNNCTG 1 cut(s) 1253
AoxI GGCC 4 cut(s) 3, 349, 681, 915
ApeKI GCWGC 4 cut(s) 241, 701, 964, 997
ApoI RAATTY 3 cut(s) 190, 468, 1351
Asp700I GAANNNNTTC 1 cut(s) 1035
AspLEI GCGC 1 cut(s) 68
AspS9I GGNCC 3 cut(s) 349, 405, 681
AsuC2I CCSGG 1 cut(s) 1427
AsuHPI GGTGA 5 cut(s) 45, 650, 772, 911, 1208
AsuNHI GCTAGC 1 cut(s) 1049
AvaII GGWCC 1 cut(s) 405
BbsI GAAGAC 1 cut(s) 675
BbvI GCAGC 4 cut(s) 228, 713, 951, 1009
BccI CCATC 3 cut(s) 416, 1193, 1313
BceAI ACGGC 1 cut(s) 930
BcgI CGANNNNNNTGC 2 cut(s) 223, 257
BciT130I CCWGG 3 cut(s) 773, 879, 938
BcnI CCSGG 1 cut(s) 1427
BcoDI GTCTC 3 cut(s) 367, 596, 1325
BfaI CTAG 3 cut(s) 14, 1050, 1359
BisI GCNGC 5 cut(s) 242, 255, 702, 965, 998
BlsI GCNGC 5 cut(s) 243, 256, 703, 966, 999
BmcAI AGTACT 2 cut(s) 12, 1493
Bme1390I CCNGG 4 cut(s) 773, 879, 938, 1427
Bme18I GGWCC 1 cut(s) 405
BmgT120I GGNCC 3 cut(s) 349, 405, 681
BmiI GGNNCC 4 cut(s) 750, 1095, 1143, 1444
BmrFI CCNGG 4 cut(s) 773, 879, 938, 1427
BmsI GCATC 3 cut(s) 604, 858, 1020
BmtI GCTAGC 1 cut(s) 1053
BpiI GAAGAC 1 cut(s) 675
BplI GAGNNNNNCTC 2 cut(s) 657, 689
BpmI CTGGAG 1 cut(s) 165
BpuEI CTTGAG 1 cut(s) 1349
BpuMI CCSGG 1 cut(s) 1427
BsaI GGTCTC 1 cut(s) 596
BsaJI CCNNGG 5 cut(s) 40, 502, 878, 937, 1403
BsaWI WCCGGW 1 cut(s) 402
BsaXI ACNNNNNCTCC 2 cut(s) 1243, 1273
Bsc4I CCNNNNNNNGG 5 cut(s) 143, 679, 884, 989, 1226
Bse1I ACTGG 2 cut(s) 56, 1316
Bse3DI GCAATG 2 cut(s) 24, 1383
BseBI CCWGG 3 cut(s) 773, 879, 938
BseDI CCNNGG 5 cut(s) 40, 502, 878, 937, 1403
BseGI GGATG 3 cut(s) 77, 179, 1435
BseLI CCNNNNNNNGG 5 cut(s) 143, 679, 884, 989, 1226
BseMI GCAATG 2 cut(s) 24, 1383
BseMII CTCAG 5 cut(s) 137, 223, 744, 950, 1099
BseNI ACTGG 2 cut(s) 56, 1316
BseRI GAGGAG 2 cut(s) 705, 1374
BseXI GCAGC 4 cut(s) 228, 713, 951, 1009
BseYI CCCAGC 1 cut(s) 1023
BsgI GTGCAG 3 cut(s) 720, 836, 1157
BshFI GGCC 4 cut(s) 5, 351, 683, 917
BsiSI CCGG 2 cut(s) 403, 1426
BslFI GGGAC 2 cut(s) 1078, 1116
BslI CCNNNNNNNGG 5 cut(s) 143, 679, 884, 989, 1226
BsmAI GTCTC 3 cut(s) 367, 596, 1325
BsmFI GGGAC 2 cut(s) 1078, 1116
BsmI GAATGC 2 cut(s) 1212, 1572
BsnI GGCC 4 cut(s) 5, 351, 683, 917
Bso31I GGTCTC 1 cut(s) 596
Bsp143I GATC 7 cut(s) 315, 418, 642, 732, 850, 1293, 1540
Bsp19I CCATGG 1 cut(s) 502
BspACI CCGC 4 cut(s) 239, 254, 1120, 1586
BspANI GGCC 4 cut(s) 5, 351, 683, 917
BspCNI CTCAG 5 cut(s) 136, 222, 745, 951, 1098
BspHI TCATGA 2 cut(s) 337, 1369
BspLI GGNNCC 4 cut(s) 750, 1095, 1143, 1444
BspOI GCTAGC 1 cut(s) 1053
BspPI GGATC 3 cut(s) 637, 1288, 1535
BspTNI GGTCTC 1 cut(s) 596
BsrDI GCAATG 2 cut(s) 24, 1383
BsrI ACTGG 2 cut(s) 56, 1316
BssECI CCNNGG 5 cut(s) 40, 502, 878, 937, 1403
BssMI GATC 7 cut(s) 315, 418, 642, 732, 850, 1293, 1540
BssT1I CCWWGG 3 cut(s) 40, 502, 1403
Bst2UI CCWGG 3 cut(s) 773, 879, 938
Bst4CI ACNGT 2 cut(s) 286, 766
Bst6I CTCTTC 1 cut(s) 1587
BstC8I GCNNGC 3 cut(s) 980, 1051, 1279
BstDEI CTNAG 7 cut(s) 7, 82, 123, 209, 753, 959, 1085
BstDSI CCRYGG 1 cut(s) 502
BstENI CCTNNNNNAGG 1 cut(s) 1224
BstF5I GGATG 3 cut(s) 77, 179, 1435
BstHHI GCGC 1 cut(s) 68
BstKTI GATC 7 cut(s) 318, 421, 645, 735, 853, 1296, 1543
BstMAI GTCTC 3 cut(s) 367, 596, 1325
BstMBI GATC 7 cut(s) 315, 418, 642, 732, 850, 1293, 1540
BstMWI GCNNNNNNNGC 2 cut(s) 485, 961
BstNI CCWGG 3 cut(s) 773, 879, 938
BstNSI RCATGY 1 cut(s) 394
BstSCI CCNGG 4 cut(s) 771, 877, 936, 1425
BstV1I GCAGC 4 cut(s) 228, 713, 951, 1009
BstV2I GAAGAC 1 cut(s) 675
BstX2I RGATCY 3 cut(s) 642, 1293, 1540
BstYI RGATCY 3 cut(s) 642, 1293, 1540
BsuRI GGCC 4 cut(s) 5, 351, 683, 917
BtgI CCRYGG 1 cut(s) 502
BtsCI GGATG 3 cut(s) 77, 179, 1435
BtsI GCAGTG 1 cut(s) 824
BtsIMutI CAGTG 3 cut(s) 282, 824, 1251
Cac8I GCNNGC 3 cut(s) 980, 1051, 1279
CaiI CAGNNNCTG 1 cut(s) 1253
CciI TCATGA 2 cut(s) 337, 1369
CfoI GCGC 1 cut(s) 68
Cfr13I GGNCC 3 cut(s) 349, 405, 681
Csp6I GTAC 4 cut(s) 11, 443, 1345, 1492
CviAII CATG 8 cut(s) 63, 272, 338, 391, 503, 574, 1370, 1388
CviQI GTAC 4 cut(s) 11, 443, 1345, 1492
DdeI CTNAG 7 cut(s) 7, 82, 123, 209, 753, 959, 1085
DpnI GATC 7 cut(s) 317, 420, 644, 734, 852, 1295, 1542
DpnII GATC 7 cut(s) 315, 418, 642, 732, 850, 1293, 1540
EaeI YGGCCR 1 cut(s) 915
Eam1104I CTCTTC 1 cut(s) 1587
EarI CTCTTC 1 cut(s) 1587
EciI GGCGGA 1 cut(s) 1575
Eco130I CCWWGG 3 cut(s) 40, 502, 1403
Eco31I GGTCTC 1 cut(s) 596
Eco32I GATATC 1 cut(s) 51
Eco47I GGWCC 1 cut(s) 405
Eco57I CTGAAG 1 cut(s) 1136
EcoNI CCTNNNNNAGG 1 cut(s) 1224
EcoO109I RGGNCCY 1 cut(s) 349
EcoRI GAATTC 1 cut(s) 190
EcoRII CCWGG 3 cut(s) 771, 877, 936
EcoRV GATATC 1 cut(s) 51
EcoT14I CCWWGG 3 cut(s) 40, 502, 1403
ErhI CCWWGG 3 cut(s) 40, 502, 1403
FaeI CATG 8 cut(s) 66, 275, 341, 394, 506, 577, 1373, 1391
FalI AAGNNNNNCTT 2 cut(s) 1396, 1428
FaqI GGGAC 2 cut(s) 1078, 1116
FatI CATG 8 cut(s) 62, 271, 337, 390, 502, 573, 1369, 1387
FauNDI CATATG 1 cut(s) 358
FblI GTMKAC 1 cut(s) 1434
Fnu4HI GCNGC 5 cut(s) 242, 255, 702, 965, 998
FokI GGATG 3 cut(s) 64, 166, 1442
Fsp4HI GCNGC 5 cut(s) 242, 255, 702, 965, 998
FspBI CTAG 3 cut(s) 14, 1050, 1359
GlaI GCGC 1 cut(s) 67
GluI GCNGC 5 cut(s) 242, 255, 702, 965, 998
GsaI CCCAGC 1 cut(s) 1027
GsuI CTGGAG 1 cut(s) 165
HaeIII GGCC 4 cut(s) 5, 351, 683, 917
HapII CCGG 2 cut(s) 403, 1426
HhaI GCGC 1 cut(s) 68
Hin1II CATG 8 cut(s) 66, 275, 341, 394, 506, 577, 1373, 1391
Hin6I GCGC 1 cut(s) 66
HinP1I GCGC 1 cut(s) 66
HincII GTYRAC 1 cut(s) 1435
HindII GTYRAC 1 cut(s) 1435
HindIII AAGCTT 1 cut(s) 976
HpaII CCGG 2 cut(s) 403, 1426
HphI GGTGA 5 cut(s) 45, 650, 772, 911, 1208
Hpy166II GTNNAC 4 cut(s) 154, 545, 601, 1435
Hpy188I TCNGA 5 cut(s) 212, 320, 960, 1129, 1524
Hpy188III TCNNGA 9 cut(s) 144, 187, 338, 386, 752, 1114, 1291, 1370, 1544
Hpy8I GTNNAC 4 cut(s) 154, 545, 601, 1435
HpyAV CCTTC 4 cut(s) 751, 890, 997, 1463
HpyCH4III ACNGT 2 cut(s) 286, 766
HpyCH4V TGCA 9 cut(s) 455, 488, 617, 701, 800, 817, 997, 1011, 1138
HpyF10VI GCNNNNNNNGC 2 cut(s) 485, 961
HpyF3I CTNAG 7 cut(s) 7, 82, 123, 209, 753, 959, 1085
Hsp92II CATG 8 cut(s) 66, 275, 341, 394, 506, 577, 1373, 1391
HspAI GCGC 1 cut(s) 66
Kzo9I GATC 7 cut(s) 315, 418, 642, 732, 850, 1293, 1540
Lsp1109I GCAGC 4 cut(s) 228, 713, 951, 1009
LweI GCATC 3 cut(s) 604, 858, 1020
MaeI CTAG 3 cut(s) 14, 1050, 1359
MaeIII GTNAC 3 cut(s) 569, 760, 873
MalI GATC 7 cut(s) 317, 420, 644, 734, 852, 1295, 1542
MboI GATC 7 cut(s) 315, 418, 642, 732, 850, 1293, 1540
MboII GAAGA 5 cut(s) 271, 680, 742, 1524, 1574
MfeI CAATTG 1 cut(s) 986
MflI RGATCY 3 cut(s) 642, 1293, 1540
MlyI GAGTC 4 cut(s) 156, 214, 723, 1375
MmeI TCCRAC 3 cut(s) 186, 390, 1601
MroXI GAANNNNTTC 1 cut(s) 1035
MseI TTAA 6 cut(s) 396, 744, 1308, 1349, 1488, 1527
MslI CAYNNNNRTG 4 cut(s) 342, 812, 863, 1016
MspA1I CMGCKG 1 cut(s) 241
MspI CCGG 2 cut(s) 403, 1426
MspR9I CCNGG 4 cut(s) 773, 879, 938, 1427
MunI CAATTG 1 cut(s) 986
Mva1269I GAATGC 2 cut(s) 1212, 1572
MvaI CCWGG 3 cut(s) 773, 879, 938
MwoI GCNNNNNNNGC 2 cut(s) 485, 961
NciI CCSGG 1 cut(s) 1427
NcoI CCATGG 1 cut(s) 502
NdeI CATATG 1 cut(s) 358
NdeII GATC 7 cut(s) 315, 418, 642, 732, 850, 1293, 1540
NheI GCTAGC 1 cut(s) 1049
NlaIII CATG 8 cut(s) 66, 275, 341, 394, 506, 577, 1373, 1391
NlaIV GGNNCC 4 cut(s) 750, 1095, 1143, 1444
NmuCI GTSAC 1 cut(s) 760
NspI RCATGY 1 cut(s) 394
PagI TCATGA 2 cut(s) 337, 1369
PciI ACATGT 1 cut(s) 390
PctI GAATGC 2 cut(s) 1212, 1572
PdmI GAANNNNTTC 1 cut(s) 1035
PfeI GAWTC 6 cut(s) 507, 944, 970, 1031, 1216, 1399
PflMI CCANNNNNTGG 2 cut(s) 143, 884
PkrI GCNGC 5 cut(s) 243, 256, 703, 966, 999
PleI GAGTC 4 cut(s) 155, 214, 722, 1375
PpsI GAGTC 4 cut(s) 155, 214, 722, 1375
PscI ACATGT 1 cut(s) 390
Psp6I CCWGG 3 cut(s) 771, 877, 936
PspFI CCCAGC 1 cut(s) 1023
PspGI CCWGG 3 cut(s) 771, 877, 936
PspN4I GGNNCC 4 cut(s) 750, 1095, 1143, 1444
PspPI GGNCC 3 cut(s) 349, 405, 681
PstNI CAGNNNCTG 1 cut(s) 1253
PsuI RGATCY 3 cut(s) 642, 1293, 1540
RsaI GTAC 4 cut(s) 12, 444, 1346, 1493
RsaNI GTAC 4 cut(s) 11, 443, 1345, 1492
RseI CAYNNNNRTG 4 cut(s) 342, 812, 863, 1016
SalI GTCGAC 1 cut(s) 1433
SaqAI TTAA 6 cut(s) 396, 744, 1308, 1349, 1488, 1527
SatI GCNGC 5 cut(s) 242, 255, 702, 965, 998
Sau3AI GATC 7 cut(s) 315, 418, 642, 732, 850, 1293, 1540
Sau96I GGNCC 3 cut(s) 349, 405, 681
ScaI AGTACT 2 cut(s) 12, 1493
SchI GAGTC 4 cut(s) 156, 214, 723, 1375
ScrFI CCNGG 4 cut(s) 773, 879, 938, 1427
SfaNI GCATC 3 cut(s) 604, 858, 1020
SinI GGWCC 1 cut(s) 405
SmiMI CAYNNNNRTG 4 cut(s) 342, 812, 863, 1016
SmlI CTYRAG 1 cut(s) 1328
SmoI CTYRAG 1 cut(s) 1328
SsiI CCGC 4 cut(s) 239, 254, 1120, 1586
SspI AATATT 2 cut(s) 415, 1301
SspMI CTAG 3 cut(s) 14, 1050, 1359
StyD4I CCNGG 4 cut(s) 771, 877, 936, 1425
StyI CCWWGG 3 cut(s) 40, 502, 1403
TaaI ACNGT 2 cut(s) 286, 766
TaqI TCGA 5 cut(s) 218, 648, 777, 1014, 1434
TatI WGTACW 2 cut(s) 10, 1491
TauI GCSGC 1 cut(s) 257
TfiI GAWTC 6 cut(s) 507, 944, 970, 1031, 1216, 1399
Tru1I TTAA 6 cut(s) 396, 744, 1308, 1349, 1488, 1527
Tru9I TTAA 6 cut(s) 396, 744, 1308, 1349, 1488, 1527
TscAI CASTG 3 cut(s) 289, 824, 1258
TseFI GTSAC 1 cut(s) 760
TseI GCWGC 4 cut(s) 241, 701, 964, 997
Tsp45I GTSAC 1 cut(s) 760
TspDTI ATGAA 6 cut(s) 51, 66, 847, 1293, 1358, 1578
TspGWI ACGGA 1 cut(s) 172
TspRI CASTG 3 cut(s) 289, 824, 1258
Van91I CCANNNNNTGG 2 cut(s) 143, 884
VpaK11BI GGWCC 1 cut(s) 405
XagI CCTNNNNNAGG 1 cut(s) 1224
XapI RAATTY 3 cut(s) 190, 468, 1351
XceI RCATGY 1 cut(s) 394
XmiI GTMKAC 1 cut(s) 1434
XmnI GAANNNNTTC 1 cut(s) 1035
XspI CTAG 3 cut(s) 14, 1050, 1359
ZrmI AGTACT 2 cut(s) 12, 1493
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.