RLG00000031660

Protein of unknown function, DUF599

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0004799
Physical Location & Seq
Reverse (-)
7165002 .. 7197112
32111 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031660

Sequence Viewer

Length: 699 bp
ATGGGTTTTGGAAAGGAGTATCTTGATTTGGTGTTGGTCCCAACTGGATTGCTGATCATGTTTGTCTATCACATCAACCTTCTCTACAGATATCTGTATCTCCCCCACACCACAGTCGTTGGCTTTGAAAACCATGACAAAAGAGCTTGGGTTGTGAGAATTATGCAGATTGACAAAAAAGACCTCGGTGCATTTCTTAATGTGATTTCAGCAGACATATCCGTAGCAATTTTCATGTGTTCCATCTCCCTAACTCTCAGTTCTCTTGTTGGAGCTTGGATGGGAGGTAGTACAAATGAAGTCTTTCAGAGTAATCTAATCTACGGCAACAGGAGCCCGTCAACTCTTACAGTCAAGTATGTAAGCCTCTTAACTTGTTTTCTTCTCGGATTCGCTTGCTTTGTTCAATCAGCAAGGCACTTTGTTCATGCAAACTATCTAATAACCACACCGAACTCTGATATCCCAGTTTGGTATGTAGAGATAGCAGTCATAAGGGGAGGCGATTTTCGTTCCCTTGGGCTTAGAGCTTTGTATTTTGCTCTAACTCTGCTGCTTTGGTTTTTTGGCCCTATACCAATGCTTTCTTCCTCTATCGTTACGGTCATAATCCTTCATTACATGGACACGAATACCAGACCACTGTATCAACATCACTTTCCGGAAAGACAGCTGGTTCCGAGAGTATCTGACGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF599

Protein Analysis

233

Amino Acids

26.32

Weight (kDa)

8.42

Isoelectric Point (pI)

33.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF599 PF04654 11 - 212 1.5e-53 Protein of unknown function, DUF599
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 696
AccIII TCCGGA 1 cut(s) 661
AcyI GRCGYC 1 cut(s) 693
AfaI GTAC 1 cut(s) 292
AgsI TTSAA 2 cut(s) 128, 407
AjuI GAANNNNNNNTTGG 2 cut(s) 571, 603
AluBI AGCT 4 cut(s) 146, 275, 530, 673
AluI AGCT 4 cut(s) 146, 275, 530, 673
Aor13HI TCCGGA 1 cut(s) 661
AoxI GGCC 1 cut(s) 568
ApeKI GCWGC 1 cut(s) 553
Asp700I GAANNNNTTC 1 cut(s) 303
AspS9I GGNCC 2 cut(s) 37, 569
AvaII GGWCC 1 cut(s) 37
BaeI ACNNNNGTAYC 2 cut(s) 629, 662
BanII GRGCYC 1 cut(s) 338
BbvI GCAGC 1 cut(s) 540
BccI CCATC 2 cut(s) 251, 274
BceAI ACGGC 1 cut(s) 340
BclI TGATCA 1 cut(s) 54
BfmI CTRYAG 1 cut(s) 85
BisI GCNGC 1 cut(s) 554
BlsI GCNGC 1 cut(s) 555
Bme18I GGWCC 1 cut(s) 37
BmgT120I GGNCC 2 cut(s) 37, 569
BmiI GGNNCC 3 cut(s) 39, 335, 678
BmrI ACTGGG 1 cut(s) 461
BmuI ACTGGG 1 cut(s) 461
BsaHI GRCGYC 1 cut(s) 693
BsaJI CCNNGG 2 cut(s) 184, 517
BsaWI WCCGGW 1 cut(s) 661
Bse1I ACTGG 2 cut(s) 49, 467
BseAI TCCGGA 1 cut(s) 661
BseDI CCNNGG 2 cut(s) 184, 517
BseGI GGATG 1 cut(s) 285
BseMII CTCAG 1 cut(s) 271
BseNI ACTGG 2 cut(s) 49, 467
BseXI GCAGC 1 cut(s) 540
BshFI GGCC 1 cut(s) 570
BsiSI CCGG 1 cut(s) 662
BslFI GGGAC 1 cut(s) 23
BsmFI GGGAC 1 cut(s) 23
BsnI GGCC 1 cut(s) 570
Bsp1286I GDGCHC 1 cut(s) 338
Bsp13I TCCGGA 1 cut(s) 661
Bsp143I GATC 1 cut(s) 54
BspANI GGCC 1 cut(s) 570
BspCNI CTCAG 1 cut(s) 270
BspEI TCCGGA 1 cut(s) 661
BspLI GGNNCC 3 cut(s) 39, 335, 678
BsrI ACTGG 2 cut(s) 49, 467
BssECI CCNNGG 2 cut(s) 184, 517
BssMI GATC 1 cut(s) 54
BssNI GRCGYC 1 cut(s) 693
BssT1I CCWWGG 1 cut(s) 517
Bst4CI ACNGT 4 cut(s) 115, 352, 604, 645
BstACI GRCGYC 1 cut(s) 693
BstC8I GCNNGC 1 cut(s) 397
BstDEI CTNAG 2 cut(s) 257, 524
BstF5I GGATG 1 cut(s) 285
BstKTI GATC 1 cut(s) 57
BstMBI GATC 1 cut(s) 54
BstMWI GCNNNNNNNGC 1 cut(s) 333
BstSFI CTRYAG 1 cut(s) 85
BstV1I GCAGC 1 cut(s) 540
BsuRI GGCC 1 cut(s) 570
BtsCI GGATG 1 cut(s) 285
BtsIMutI CAGTG 1 cut(s) 641
Cac8I GCNNGC 1 cut(s) 397
Cfr13I GGNCC 2 cut(s) 37, 569
Csp6I GTAC 1 cut(s) 291
CspCI CAANNNNNGTGG 2 cut(s) 100, 135
CviAII CATG 5 cut(s) 58, 134, 235, 428, 622
CviJI RGCY 9 cut(s) 123, 146, 275, 336, 366, 523, 530, 570, 673
CviKI_1 RGCY 9 cut(s) 123, 146, 275, 336, 366, 523, 530, 570, 673
CviQI GTAC 1 cut(s) 291
DdeI CTNAG 2 cut(s) 257, 524
DpnI GATC 1 cut(s) 56
DpnII GATC 1 cut(s) 54
Eco130I CCWWGG 1 cut(s) 517
Eco24I GRGCYC 1 cut(s) 338
Eco32I GATATC 2 cut(s) 92, 463
Eco47I GGWCC 1 cut(s) 37
EcoRV GATATC 2 cut(s) 92, 463
EcoT14I CCWWGG 1 cut(s) 517
EcoT38I GRGCYC 1 cut(s) 338
ErhI CCWWGG 1 cut(s) 517
FaeI CATG 5 cut(s) 61, 137, 238, 431, 625
FaqI GGGAC 1 cut(s) 23
FatI CATG 5 cut(s) 57, 133, 234, 427, 621
FbaI TGATCA 1 cut(s) 54
Fnu4HI GCNGC 1 cut(s) 554
FokI GGATG 1 cut(s) 292
FriOI GRGCYC 1 cut(s) 338
Fsp4HI GCNGC 1 cut(s) 554
GluI GCNGC 1 cut(s) 554
HaeIII GGCC 1 cut(s) 570
HapII CCGG 1 cut(s) 662
Hin1I GRCGYC 1 cut(s) 693
Hin1II CATG 5 cut(s) 61, 137, 238, 431, 625
HincII GTYRAC 1 cut(s) 342
HindII GTYRAC 1 cut(s) 342
HinfI GANTC 1 cut(s) 390
HpaII CCGG 1 cut(s) 662
Hpy166II GTNNAC 1 cut(s) 342
Hpy188I TCNGA 6 cut(s) 309, 389, 460, 681, 691, 698
Hpy188III TCNNGA 2 cut(s) 23, 662
Hpy8I GTNNAC 1 cut(s) 342
HpyAV CCTTC 2 cut(s) 89, 623
HpyCH4III ACNGT 4 cut(s) 115, 352, 604, 645
HpyCH4IV ACGT 1 cut(s) 693
HpyCH4V TGCA 3 cut(s) 166, 191, 431
HpyF10VI GCNNNNNNNGC 1 cut(s) 333
HpyF3I CTNAG 2 cut(s) 257, 524
HpySE526I ACGT 1 cut(s) 693
Hsp92I GRCGYC 1 cut(s) 693
Hsp92II CATG 5 cut(s) 61, 137, 238, 431, 625
Kpn2I TCCGGA 1 cut(s) 661
Ksp22I TGATCA 1 cut(s) 54
Kzo9I GATC 1 cut(s) 54
LmnI GCTCC 2 cut(s) 272, 333
LpnPI CCDG 6 cut(s) 30, 316, 480, 649, 659, 675
Lsp1109I GCAGC 1 cut(s) 540
MaeII ACGT 1 cut(s) 693
MaeIII GTNAC 1 cut(s) 598
MalI GATC 1 cut(s) 56
MboI GATC 1 cut(s) 54
MboII GAAGA 2 cut(s) 374, 579
MhlI GDGCHC 1 cut(s) 338
MluCI AATT 2 cut(s) 159, 228
MmeI TCCRAC 1 cut(s) 250
MnlI CCTC 5 cut(s) 194, 278, 377, 494, 601
MroI TCCGGA 1 cut(s) 661
MroXI GAANNNNTTC 1 cut(s) 303
MseI TTAA 2 cut(s) 198, 371
MspA1I CMGCKG 1 cut(s) 673
MspI CCGG 1 cut(s) 662
MwoI GCNNNNNNNGC 1 cut(s) 333
NdeII GATC 1 cut(s) 54
NlaIII CATG 5 cut(s) 61, 137, 238, 431, 625
NlaIV GGNNCC 3 cut(s) 39, 335, 678
PdmI GAANNNNTTC 1 cut(s) 303
PfeI GAWTC 1 cut(s) 390
PkrI GCNGC 1 cut(s) 555
PspN4I GGNNCC 3 cut(s) 39, 335, 678
PspPI GGNCC 2 cut(s) 37, 569
PvuII CAGCTG 1 cut(s) 673
RsaI GTAC 1 cut(s) 292
RsaNI GTAC 1 cut(s) 291
SaqAI TTAA 2 cut(s) 198, 371
SatI GCNGC 1 cut(s) 554
Sau3AI GATC 1 cut(s) 54
Sau96I GGNCC 2 cut(s) 37, 569
SduI GDGCHC 1 cut(s) 338
SetI ASST 8 cut(s) 81, 148, 186, 277, 289, 532, 675, 696
SfcI CTRYAG 1 cut(s) 85
SinI GGWCC 1 cut(s) 37
Sse9I AATT 2 cut(s) 159, 228
StyI CCWWGG 1 cut(s) 517
TaaI ACNGT 4 cut(s) 115, 352, 604, 645
TaiI ACGT 1 cut(s) 696
TasI AATT 2 cut(s) 159, 228
TatI WGTACW 1 cut(s) 290
TfiI GAWTC 1 cut(s) 390
Tru1I TTAA 2 cut(s) 198, 371
Tru9I TTAA 2 cut(s) 198, 371
TscAI CASTG 1 cut(s) 648
TseI GCWGC 1 cut(s) 553
TspDTI ATGAA 4 cut(s) 223, 312, 416, 605
TspGWI ACGGA 1 cut(s) 211
TspRI CASTG 1 cut(s) 648
VpaK11BI GGWCC 1 cut(s) 37
XmnI GAANNNNTTC 1 cut(s) 303
ZraI GACGTC 1 cut(s) 694
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.