Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0004799

Physical Location & Seq

Genomic Coordinates Reverse (-)

1802248 .. 1803105

Gene Structure 858 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G016600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGCTTTTGGAAAGGAGGACCTTGATTTGGTGTTGGTCCCAAGTGGATTGCTGATCATGTTTCTCTACCACATCATCCTTCTCTACAGATATCTTCATCTCCCTCACACCACAGTCATTGGCTTTGAGAACAATGACAAAAGAGCTTGGGTTGAAAGAATTATGCAGGATAATAAAAGAGATACTGGCACAGTCCTCAGTGTGATTTCATCCAACATATCAGCAGTAACTTTTTTGTGTTCCGTCTCCTTAAGTCTCAGTTCTCTCATTGGAACTTGGCTTGGAAGTAGTTCCAGCCATGAAGTCTTTACGAGCGAATTAATCTACGGCAACGTCAGCCCCTCAATCCTTACCATCAAGTACATAAGCCTCTTAACTTGTCTTCTTCTGGCCTTTGGATTCTTTGTTCAATCAGCAAGGCACTTTGTTCATGCAAACTATCTGATAAGCACACCAGACAGTAATATTCCGGCTTCGTACGTGGAGCTGGCAGTTATAAGAGGAGGTGATTTCTGGTCACTTGGGCTTAGAGCACTCTATTTTGCTCTAACTCTGCTTCTGTGGTTTTTTGGTCCAATACCAATGTTTGCCTCCTCCTTGGTTTTGGTCATATTCCTCCATTACATGGACACAAACACCAGACCTTTTCATGACCACCAGCTTCCGGGAAGGCAGCTGGTTAAAGAGGTTGGTCAGAGAATCACAGAGGTGGCTGTGAACATTCATCAGCATTCAGAAACAGTTGAAACTAAGGAGAATACCACCACAGCCCGAATGAAATCAGTCGATCCCCCCATATCTGTATTGACAGACTCGATATCACAAGATCAGCAATATATGCTAAAGATGGATTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF599

Protein Analysis

286

Amino Acids

32.08

Weight (kDa)

6.1

Isoelectric Point (pI)

42.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004799)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46060
fragaria_vesca	FvH4_3g08420
malus_domestica	MD03G1235700.v1.1 MD05G1308900.v1.1 MD10G1287600.v1.1 MD11G1256800.v1.1
prunus_persica	Prupe.4G173300_v2.0.a1 Prupe.5G016600_v2.0.a1
pyrus_communis	pycom10g24060
rosa_chinensis	RchiOBHm_Chr5g0009451 RchiOBHm_Chr5g0032251
rosa_laevigata	RLG00000031660 RLG00000031663 RLG00000033374
rosa_multiflora	Rmu_sc0002711.1_g000017 Rmu_sc0038269.1_g000002 Rmu_sc0038270.1_g000001 Rmu_sc0038270.1_g000004
rosa_roxburghii	Rroxscaffold_1G00048210 Rroxscaffold_1G00067370
rosa_rugosa	Rorug04G0443200 Rorug05G0130000
rosa_samantha	Rh5AG074200 Rh5AG224000 Rh5BG069900 Rh5BG224700 Rh5CG082400 Rh5DG070300 Rh5DG229200
rosa_wichuraiana	Rw5G006870 Rw5G020420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	497
AccB7I	CCANNNNNTGG	1 cut(s)	625
AclWI	GGATC	1 cut(s)	782
AfaI	GTAC	2 cut(s)	362, 479
AfiI	CCNNNNNNNGG	3 cut(s)	28, 625, 664
AflII	CTTAAG	1 cut(s)	250
AgsI	TTSAA	3 cut(s)	155, 410, 746
AleI	CACNNNNGTG	1 cut(s)	707
AloI	GAACNNNNNNTCC	2 cut(s)	390, 422
AluBI	AGCT	4 cut(s)	146, 487, 661, 676
AluI	AGCT	4 cut(s)	146, 487, 661, 676
Alw21I	GWGCWC	1 cut(s)	535
Alw26I	GTCTC	2 cut(s)	250, 260
AlwI	GGATC	1 cut(s)	782
AoxI	GGCC	1 cut(s)	390
ApeKI	GCWGC	1 cut(s)	673
AseI	ATTAAT	1 cut(s)	320
Asp700I	GAANNNNTTC	1 cut(s)	289
AspS9I	GGNCC	3 cut(s)	19, 37, 572
AsuC2I	CCSGG	1 cut(s)	666
AsuHPI	GGTGA	1 cut(s)	518
AvaII	GGWCC	3 cut(s)	19, 37, 572
BbsI	GAAGAC	1 cut(s)	374
Bbv12I	GWGCWC	1 cut(s)	535
BbvI	GCAGC	1 cut(s)	685
BccI	CCATC	2 cut(s)	362, 841
BceAI	ACGGC	1 cut(s)	343
BclI	TGATCA	1 cut(s)	54
BcnI	CCSGG	1 cut(s)	666
BcoDI	GTCTC	2 cut(s)	250, 260
BfmI	CTRYAG	1 cut(s)	85
BfrI	CTTAAG	1 cut(s)	250
BisI	GCNGC	1 cut(s)	674
BlsI	GCNGC	1 cut(s)	675
Bme1390I	CCNGG	1 cut(s)	666
Bme18I	GGWCC	3 cut(s)	19, 37, 572
BmgT120I	GGNCC	3 cut(s)	19, 37, 572
BmiI	GGNNCC	1 cut(s)	39
BmrFI	CCNGG	1 cut(s)	666
BpiI	GAAGAC	1 cut(s)	374
BpuMI	CCSGG	1 cut(s)	666
BsaAI	YACGTR	1 cut(s)	481
BsaJI	CCNNGG	1 cut(s)	597
Bsc4I	CCNNNNNNNGG	3 cut(s)	28, 625, 664
Bse1I	ACTGG	1 cut(s)	190
BseDI	CCNNGG	1 cut(s)	597
BseGI	GGATG	2 cut(s)	75, 209
BseLI	CCNNNNNNNGG	3 cut(s)	28, 625, 664
BseMII	CTCAG	2 cut(s)	211, 271
BseNI	ACTGG	1 cut(s)	190
BseRI	GAGGAG	2 cut(s)	516, 583
BseXI	GCAGC	1 cut(s)	685
BshFI	GGCC	1 cut(s)	392
BsiHKAI	GWGCWC	1 cut(s)	535
BsiSI	CCGG	2 cut(s)	470, 665
BsiWI	CGTACG	1 cut(s)	477
BslFI	GGGAC	1 cut(s)	23
BslI	CCNNNNNNNGG	3 cut(s)	28, 625, 664
BsmAI	GTCTC	2 cut(s)	250, 260
BsmBI	CGTCTC	1 cut(s)	250
BsmFI	GGGAC	1 cut(s)	23
BsmI	GAATGC	1 cut(s)	730
BsnI	GGCC	1 cut(s)	392
Bsp1286I	GDGCHC	1 cut(s)	535
Bsp143I	GATC	3 cut(s)	54, 787, 826
BspANI	GGCC	1 cut(s)	392
BspCNI	CTCAG	2 cut(s)	210, 270
BspHI	TCATGA	1 cut(s)	649
BspLI	GGNNCC	1 cut(s)	39
BspPI	GGATC	1 cut(s)	782
BspTI	CTTAAG	1 cut(s)	250
BsrI	ACTGG	1 cut(s)	190
BssECI	CCNNGG	1 cut(s)	597
BssMI	GATC	3 cut(s)	54, 787, 826
BssT1I	CCWWGG	1 cut(s)	597
Bst4CI	ACNGT	4 cut(s)	115, 193, 461, 742
BstAFI	CTTAAG	1 cut(s)	250
BstAPI	GCANNNNNTGC	1 cut(s)	838
BstBAI	YACGTR	1 cut(s)	481
BstC8I	GCNNGC	1 cut(s)	489
BstDEI	CTNAG	4 cut(s)	197, 257, 527, 750
BstF5I	GGATG	2 cut(s)	75, 209
BstKTI	GATC	3 cut(s)	57, 790, 829
BstMAI	GTCTC	2 cut(s)	250, 260
BstMBI	GATC	3 cut(s)	54, 787, 826
BstMWI	GCNNNNNNNGC	2 cut(s)	336, 838
BstSCI	CCNGG	1 cut(s)	664
BstSFI	CTRYAG	1 cut(s)	85
BstV1I	GCAGC	1 cut(s)	685
BstV2I	GAAGAC	1 cut(s)	374
BsuRI	GGCC	1 cut(s)	392
BtsCI	GGATG	2 cut(s)	75, 209
BtsIMutI	CAGTG	1 cut(s)	205
Cac8I	GCNNGC	1 cut(s)	489
CciI	TCATGA	1 cut(s)	649
Cfr13I	GGNCC	3 cut(s)	19, 37, 572
Csp6I	GTAC	2 cut(s)	361, 478
CspCI	CAANNNNNGTGG	2 cut(s)	100, 135
CviAII	CATG	5 cut(s)	58, 299, 431, 625, 650
CviQI	GTAC	2 cut(s)	361, 478
DdeI	CTNAG	4 cut(s)	197, 257, 527, 750
DpnI	GATC	3 cut(s)	56, 789, 828
DpnII	GATC	3 cut(s)	54, 787, 826
Eco130I	CCWWGG	1 cut(s)	597
Eco32I	GATATC	2 cut(s)	92, 819
Eco47I	GGWCC	3 cut(s)	19, 37, 572
EcoO109I	RGGNCCY	1 cut(s)	19
EcoRV	GATATC	2 cut(s)	92, 819
EcoT14I	CCWWGG	1 cut(s)	597
ErhI	CCWWGG	1 cut(s)	597
Esp3I	CGTCTC	1 cut(s)	250
FaeI	CATG	5 cut(s)	61, 302, 434, 628, 653
FaqI	GGGAC	1 cut(s)	23
FatI	CATG	5 cut(s)	57, 298, 430, 624, 649
FbaI	TGATCA	1 cut(s)	54
Fnu4HI	GCNGC	1 cut(s)	674
FokI	GGATG	2 cut(s)	62, 196
Fsp4HI	GCNGC	1 cut(s)	674
GluI	GCNGC	1 cut(s)	674
HaeIII	GGCC	1 cut(s)	392
HapII	CCGG	2 cut(s)	470, 665
Hin1II	CATG	5 cut(s)	61, 302, 434, 628, 653
HinfI	GANTC	3 cut(s)	399, 699, 812
HpaII	CCGG	2 cut(s)	470, 665
HphI	GGTGA	1 cut(s)	518
Hpy166II	GTNNAC	1 cut(s)	718
Hpy188I	TCNGA	3 cut(s)	444, 696, 736
Hpy188III	TCNNGA	1 cut(s)	650
Hpy8I	GTNNAC	1 cut(s)	718
HpyAV	CCTTC	2 cut(s)	89, 663
HpyCH4III	ACNGT	4 cut(s)	115, 193, 461, 742
HpyCH4IV	ACGT	2 cut(s)	333, 480
HpyCH4V	TGCA	2 cut(s)	166, 434
HpyF10VI	GCNNNNNNNGC	2 cut(s)	336, 838
HpyF3I	CTNAG	4 cut(s)	197, 257, 527, 750
HpySE526I	ACGT	2 cut(s)	333, 480
Hsp92II	CATG	5 cut(s)	61, 302, 434, 628, 653
Ksp22I	TGATCA	1 cut(s)	54
Kzo9I	GATC	3 cut(s)	54, 787, 826
LmnI	GCTCC	1 cut(s)	484
Lsp1109I	GCAGC	1 cut(s)	685
MaeII	ACGT	2 cut(s)	333, 480
MaeIII	GTNAC	2 cut(s)	226, 516
MalI	GATC	3 cut(s)	56, 789, 828
MboI	GATC	3 cut(s)	54, 787, 826
MboII	GAAGA	3 cut(s)	86, 374, 377
MhlI	GDGCHC	1 cut(s)	535
MluCI	AATT	2 cut(s)	159, 317
MlyI	GAGTC	1 cut(s)	806
MmeI	TCCRAC	1 cut(s)	237
MroXI	GAANNNNTTC	1 cut(s)	289
MseI	TTAA	4 cut(s)	251, 320, 374, 681
MslI	CAYNNNNRTG	1 cut(s)	707
MspA1I	CMGCKG	1 cut(s)	676
MspCI	CTTAAG	1 cut(s)	250
MspI	CCGG	2 cut(s)	470, 665
MspR9I	CCNGG	1 cut(s)	666
Mva1269I	GAATGC	1 cut(s)	730
MwoI	GCNNNNNNNGC	2 cut(s)	336, 838
NciI	CCSGG	1 cut(s)	666
NdeII	GATC	3 cut(s)	54, 787, 826
NlaIII	CATG	5 cut(s)	61, 302, 434, 628, 653
NlaIV	GGNNCC	1 cut(s)	39
NmuCI	GTSAC	1 cut(s)	516
OliI	CACNNNNGTG	1 cut(s)	707
PagI	TCATGA	1 cut(s)	649
PctI	GAATGC	1 cut(s)	730
PdmI	GAANNNNTTC	1 cut(s)	289
PfeI	GAWTC	2 cut(s)	399, 699
Pfl23II	CGTACG	1 cut(s)	477
PflMI	CCANNNNNTGG	1 cut(s)	625
PfoI	TCCNGGA	1 cut(s)	664
PkrI	GCNGC	1 cut(s)	675
PleI	GAGTC	1 cut(s)	806
PpsI	GAGTC	1 cut(s)	806
Ppu21I	YACGTR	1 cut(s)	481
PpuMI	RGGWCCY	1 cut(s)	19
PshBI	ATTAAT	1 cut(s)	320
PsiI	TTATAA	1 cut(s)	497
Psp5II	RGGWCCY	1 cut(s)	19
PspLI	CGTACG	1 cut(s)	477
PspN4I	GGNNCC	1 cut(s)	39
PspPI	GGNCC	3 cut(s)	19, 37, 572
PspPPI	RGGWCCY	1 cut(s)	19
PvuII	CAGCTG	1 cut(s)	676
RsaI	GTAC	2 cut(s)	362, 479
RsaNI	GTAC	2 cut(s)	361, 478
RseI	CAYNNNNRTG	1 cut(s)	707
SaqAI	TTAA	4 cut(s)	251, 320, 374, 681
SatI	GCNGC	1 cut(s)	674
Sau3AI	GATC	3 cut(s)	54, 787, 826
Sau96I	GGNCC	3 cut(s)	19, 37, 572
SchI	GAGTC	1 cut(s)	806
ScrFI	CCNGG	1 cut(s)	666
SduI	GDGCHC	1 cut(s)	535
SfcI	CTRYAG	1 cut(s)	85
SinI	GGWCC	3 cut(s)	19, 37, 572
SmiMI	CAYNNNNRTG	1 cut(s)	707
SmlI	CTYRAG	1 cut(s)	250
SmoI	CTYRAG	1 cut(s)	250
Sse9I	AATT	2 cut(s)	159, 317
SspI	AATATT	1 cut(s)	466
StyD4I	CCNGG	1 cut(s)	664
StyI	CCWWGG	1 cut(s)	597
TaaI	ACNGT	4 cut(s)	115, 193, 461, 742
TaiI	ACGT	2 cut(s)	336, 483
TaqI	TCGA	2 cut(s)	786, 815
TasI	AATT	2 cut(s)	159, 317
TatI	WGTACW	1 cut(s)	360
TfiI	GAWTC	2 cut(s)	399, 699
Tru1I	TTAA	4 cut(s)	251, 320, 374, 681
Tru9I	TTAA	4 cut(s)	251, 320, 374, 681
TscAI	CASTG	1 cut(s)	205
TseFI	GTSAC	1 cut(s)	516
TseI	GCWGC	1 cut(s)	673
Tsp45I	GTSAC	1 cut(s)	516
TspDTI	ATGAA	7 cut(s)	86, 198, 315, 419, 638, 713, 791
TspGWI	ACGGA	1 cut(s)	232
TspRI	CASTG	1 cut(s)	205
Van91I	CCANNNNNTGG	1 cut(s)	625
Vha464I	CTTAAG	1 cut(s)	250
VpaK11BI	GGWCC	3 cut(s)	19, 37, 572
VspI	ATTAAT	1 cut(s)	320
XmnI	GAANNNNTTC	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.