RchiOBHm_Chr5g0009451

Protein of unknown function, DUF599

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0004799
Physical Location & Seq
Reverse (-)
6297687 .. 6298686
1000 bp
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UTR
Exon/CDS
Intron
PRQ29032

Sequence Viewer

Length: 759 bp
ATGGGTTTTGGGAAGGATGATCTTGATTTGGTGTTGGTCCCAAGTGGATTGCTGATCATGTTTGTTTACCACATCAATCTTCTCTACAGATATCTTCATCTCCCTCACACCACAGTCATTGGCTTTGAAAACAATGACAAAAGAGCTTGGGTTGAAAGAGTTATGCAGGCTGAAAGAAGAGATGTTGGAATAGTACTTAATGTGATTTCATCAAACACATCAGCAGCAACATTTTTGTGTTCTATCTCCCTAACTCTTAGTTCCCTTATTGGAGCTTGGCTTGGAAGCAGCACAAATGGGGTCTTTCAGAGTGAATTAGTCTACGGCAACACGAATCCATCAACAATTACCATCAAGTACATAACCCTCTTAACTTGCTTCCTTCTCGCATTCGCTTGCTTTGTTCAATCAGCAAGGCACTTTGTTCATGCCAACTACCTAATAAGCACACCAGACAGTAACATTCCAGCCTGGTATGTAGAGATGGCAGTCATAAGGGGTGGTGATTTTTGGTCACTTGGGCTAAGAGCTTTGTACTTTGCTCTTACCTTGCTTCTATGGTTTTTTGGTCCAATTCCAATGTTTGTCTCCTCCATTGTTCTGGTCATGGTCCTCCATTACCTTGACACAAACACCAGGCCAATGTTTCAGCATCAGTTTAGAGGAAAGGAGATGGTGAAGAAGGTTGAGGAGAGAATTTCAGAGGTAGCTGTGACCTCACGGCACCATCACAGAGAAAAGGTTGAAACTTTGGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF599

Protein Analysis

252

Amino Acids

28.61

Weight (kDa)

7.81

Isoelectric Point (pI)

27.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF599 PF04654 11 - 212 7e-62 Protein of unknown function, DUF599
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 723
AccI GTMKAC 1 cut(s) 321
AcsI RAATTY 1 cut(s) 696
AfaI GTAC 3 cut(s) 195, 359, 536
AgsI TTSAA 4 cut(s) 128, 155, 407, 746
AjnI CCWGG 2 cut(s) 470, 635
AluBI AGCT 4 cut(s) 146, 275, 530, 710
AluI AGCT 4 cut(s) 146, 275, 530, 710
Alw26I GTCTC 1 cut(s) 592
AoxI GGCC 1 cut(s) 638
ApeKI GCWGC 2 cut(s) 224, 288
ApoI RAATTY 1 cut(s) 696
AspS9I GGNCC 3 cut(s) 37, 569, 610
AsuHPI GGTGA 2 cut(s) 515, 688
AvaII GGWCC 3 cut(s) 37, 569, 610
BanI GGYRCC 1 cut(s) 723
BbvI GCAGC 2 cut(s) 236, 300
BccI CCATC 5 cut(s) 346, 359, 478, 667, 735
BceAI ACGGC 2 cut(s) 340, 737
BciT130I CCWGG 2 cut(s) 472, 637
BclI TGATCA 1 cut(s) 54
BcoDI GTCTC 1 cut(s) 592
BfmI CTRYAG 1 cut(s) 85
BisI GCNGC 2 cut(s) 225, 289
BlsI GCNGC 2 cut(s) 226, 290
BmcAI AGTACT 1 cut(s) 195
Bme1390I CCNGG 2 cut(s) 472, 637
Bme18I GGWCC 3 cut(s) 37, 569, 610
BmgT120I GGNCC 3 cut(s) 37, 569, 610
BmiI GGNNCC 2 cut(s) 39, 725
BmrFI CCNGG 2 cut(s) 472, 637
BmsI GCATC 1 cut(s) 661
BseBI CCWGG 2 cut(s) 472, 637
BseGI GGATG 1 cut(s) 22
BseRI GAGGAG 2 cut(s) 580, 704
BseXI GCAGC 2 cut(s) 236, 300
BshFI GGCC 1 cut(s) 640
BshNI GGYRCC 1 cut(s) 723
BslFI GGGAC 1 cut(s) 23
BsmAI GTCTC 1 cut(s) 592
BsmFI GGGAC 1 cut(s) 23
BsmI GAATGC 1 cut(s) 389
BsnI GGCC 1 cut(s) 640
Bsp143I GATC 2 cut(s) 19, 54
BspANI GGCC 1 cut(s) 640
BspLI GGNNCC 2 cut(s) 39, 725
BspT107I GGYRCC 1 cut(s) 723
BssMI GATC 2 cut(s) 19, 54
Bst2UI CCWGG 2 cut(s) 472, 637
Bst4CI ACNGT 2 cut(s) 115, 458
Bst6I CTCTTC 1 cut(s) 172
BstC8I GCNNGC 2 cut(s) 168, 397
BstDEI CTNAG 2 cut(s) 257, 524
BstF5I GGATG 1 cut(s) 22
BstKTI GATC 2 cut(s) 22, 57
BstMAI GTCTC 1 cut(s) 592
BstMBI GATC 2 cut(s) 19, 54
BstNI CCWGG 2 cut(s) 472, 637
BstSCI CCNGG 2 cut(s) 470, 635
BstSFI CTRYAG 1 cut(s) 85
BstV1I GCAGC 2 cut(s) 236, 300
BstXI CCANNNNNNTGG 1 cut(s) 601
BsuRI GGCC 1 cut(s) 640
BtsCI GGATG 1 cut(s) 22
Cac8I GCNNGC 2 cut(s) 168, 397
Cfr13I GGNCC 3 cut(s) 37, 569, 610
Csp6I GTAC 3 cut(s) 194, 358, 535
CspCI CAANNNNNGTGG 2 cut(s) 100, 135
CviAII CATG 3 cut(s) 58, 428, 607
CviQI GTAC 3 cut(s) 194, 358, 535
DdeI CTNAG 2 cut(s) 257, 524
DpnI GATC 2 cut(s) 21, 56
DpnII GATC 2 cut(s) 19, 54
Eam1104I CTCTTC 1 cut(s) 172
EarI CTCTTC 1 cut(s) 172
Eco32I GATATC 1 cut(s) 92
Eco47I GGWCC 3 cut(s) 37, 569, 610
EcoRII CCWGG 2 cut(s) 470, 635
EcoRV GATATC 1 cut(s) 92
FaeI CATG 3 cut(s) 61, 431, 610
FaiI YATR 8 cut(s) 59, 164, 362, 429, 477, 494, 559, 608
FaqI GGGAC 1 cut(s) 23
FatI CATG 3 cut(s) 57, 427, 606
FbaI TGATCA 1 cut(s) 54
FblI GTMKAC 1 cut(s) 321
Fnu4HI GCNGC 2 cut(s) 225, 289
FokI GGATG 1 cut(s) 29
Fsp4HI GCNGC 2 cut(s) 225, 289
GluI GCNGC 2 cut(s) 225, 289
HaeIII GGCC 1 cut(s) 640
Hin1II CATG 3 cut(s) 61, 431, 610
HinfI GANTC 1 cut(s) 334
HphI GGTGA 2 cut(s) 515, 688
Hpy166II GTNNAC 2 cut(s) 67, 322
Hpy188I TCNGA 2 cut(s) 309, 703
Hpy188III TCNNGA 1 cut(s) 23
Hpy8I GTNNAC 2 cut(s) 67, 322
HpyAV CCTTC 3 cut(s) 7, 392, 676
HpyCH4III ACNGT 2 cut(s) 115, 458
HpyCH4V TGCA 1 cut(s) 166
HpyF3I CTNAG 2 cut(s) 257, 524
Hsp92II CATG 3 cut(s) 61, 431, 610
Ksp22I TGATCA 1 cut(s) 54
Kzo9I GATC 2 cut(s) 19, 54
LmnI GCTCC 1 cut(s) 272
LpnPI CCDG 8 cut(s) 152, 457, 465, 480, 484, 587, 622, 649
Lsp1109I GCAGC 2 cut(s) 236, 300
LweI GCATC 1 cut(s) 661
MaeIII GTNAC 3 cut(s) 458, 513, 712
MalI GATC 2 cut(s) 21, 56
MboI GATC 2 cut(s) 19, 54
MboII GAAGA 4 cut(s) 71, 86, 189, 691
MluCI AATT 4 cut(s) 314, 345, 573, 696
MmeI TCCRAC 1 cut(s) 166
MnlI CCTC 8 cut(s) 114, 377, 601, 623, 656, 682, 697, 727
MseI TTAA 2 cut(s) 198, 371
MslI CAYNNNNRTG 1 cut(s) 235
MspR9I CCNGG 2 cut(s) 472, 637
Mva1269I GAATGC 1 cut(s) 389
MvaI CCWGG 2 cut(s) 472, 637
NdeII GATC 2 cut(s) 19, 54
NlaIII CATG 3 cut(s) 61, 431, 610
NlaIV GGNNCC 2 cut(s) 39, 725
NmuCI GTSAC 2 cut(s) 513, 712
PctI GAATGC 1 cut(s) 389
PfeI GAWTC 1 cut(s) 334
PkrI GCNGC 2 cut(s) 226, 290
Psp6I CCWGG 2 cut(s) 470, 635
PspGI CCWGG 2 cut(s) 470, 635
PspN4I GGNNCC 2 cut(s) 39, 725
PspPI GGNCC 3 cut(s) 37, 569, 610
RsaI GTAC 3 cut(s) 195, 359, 536
RsaNI GTAC 3 cut(s) 194, 358, 535
RseI CAYNNNNRTG 1 cut(s) 235
SaqAI TTAA 2 cut(s) 198, 371
SatI GCNGC 2 cut(s) 225, 289
Sau3AI GATC 2 cut(s) 19, 54
Sau96I GGNCC 3 cut(s) 37, 569, 610
ScaI AGTACT 1 cut(s) 195
ScrFI CCNGG 2 cut(s) 472, 637
SfaNI GCATC 1 cut(s) 661
SfcI CTRYAG 1 cut(s) 85
SinI GGWCC 3 cut(s) 37, 569, 610
SmiMI CAYNNNNRTG 1 cut(s) 235
Sse9I AATT 4 cut(s) 314, 345, 573, 696
StyD4I CCNGG 2 cut(s) 470, 635
TaaI ACNGT 2 cut(s) 115, 458
TasI AATT 4 cut(s) 314, 345, 573, 696
TatI WGTACW 3 cut(s) 193, 357, 534
TfiI GAWTC 1 cut(s) 334
Tru1I TTAA 2 cut(s) 198, 371
Tru9I TTAA 2 cut(s) 198, 371
TseFI GTSAC 2 cut(s) 513, 712
TseI GCWGC 2 cut(s) 224, 288
Tsp45I GTSAC 2 cut(s) 513, 712
TspDTI ATGAA 3 cut(s) 86, 198, 416
VpaK11BI GGWCC 3 cut(s) 37, 569, 610
XapI RAATTY 1 cut(s) 696
XmiI GTMKAC 1 cut(s) 321
ZrmI AGTACT 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.