Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0004799

Physical Location & Seq

Genomic Coordinates Forward (+)

10260228 .. 10261327

Gene Structure 1100 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G173300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGTTTGGAAGAAAGAATACTTAGATCTAGTGTTGGTCCCAACTGGTTTGCTAATCATGTTTTGCTACCATCTCTTTCTTCTCTACAGATGCCTAAGACATCCAGAAACCACAGTCATTGGCAATGAGAACCACTGCAGAAAAGCTTGGGTTGAGAGAATGTTGCAGGTTGAAGCAAAGGACAGAGGCCTGTCCGTAACAGTAATCTCCTGCACCATAACAGCGGCGAATTTCTTAGCTTCAACCTCTTTAGCATTGAGCTCTCTGATTGGAGCATGGATTGGGAGCTCTTCACACAACATCTTCATGAGTAGCATTACATATGGTGACACAAGTCCTGCCATAATTTCTATCAAATATATTAGCATTCTGGCCTGCTTCCTCCTTGCTTTGGCTTCCTTTTTACATTGCATAAGAAACTTTGTCCATGCCAATTTCCTCATCAGCATGCCAGACAGTGACATTCCTTTGGCTCATGTGGAGAAGGCTGTGATAAGTGGTGGCTTGTTCTGGACTCTGGGGTTAAGAGCTATCTACTTTGCCACTACTTTGCTCCTCTGGATTTTTGGTCCAATTCCGATGTTTGTTTGTTCAGTGATTATGGTGTTGATTTTGCACAGGCTTGATTCAAATTCCACTCCATTGCATCAGTTCCAACCAGCCAAGAGTCATAATGTGCTCAGGAAAATTGGTGAAGAAAACAGCAGAATAGAAAGGGCTATTGAGCAACATCATGAAAGATCACACATGGATGGAAGCAGAGCTCAAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF599

Protein Analysis

258

Amino Acids

28.85

Weight (kDa)

8.49

Isoelectric Point (pI)

39.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004799)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46060
fragaria_vesca	FvH4_3g08420
malus_domestica	MD03G1235700.v1.1 MD05G1308900.v1.1 MD10G1287600.v1.1 MD11G1256800.v1.1
prunus_persica	Prupe.4G173300_v2.0.a1 Prupe.5G016600_v2.0.a1
pyrus_communis	pycom10g24060
rosa_chinensis	RchiOBHm_Chr5g0009451 RchiOBHm_Chr5g0032251
rosa_laevigata	RLG00000031660 RLG00000031663 RLG00000033374
rosa_multiflora	Rmu_sc0002711.1_g000017 Rmu_sc0038269.1_g000002 Rmu_sc0038270.1_g000001 Rmu_sc0038270.1_g000004
rosa_roxburghii	Rroxscaffold_1G00048210 Rroxscaffold_1G00067370
rosa_rugosa	Rorug04G0443200 Rorug05G0130000
rosa_samantha	Rh5AG074200 Rh5AG224000 Rh5BG069900 Rh5BG224700 Rh5CG082400 Rh5DG070300 Rh5DG229200
rosa_wichuraiana	Rw5G006870 Rw5G020420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	157
AciI	CCGC	1 cut(s)	224
AcsI	RAATTY	2 cut(s)	229, 631
AfiI	CCNNNNNNNGG	1 cut(s)	391
AgsI	TTSAA	3 cut(s)	173, 243, 630
AluBI	AGCT	6 cut(s)	146, 239, 261, 288, 530, 764
AluI	AGCT	6 cut(s)	146, 239, 261, 288, 530, 764
Alw21I	GWGCWC	4 cut(s)	263, 290, 681, 766
AoxI	GGCC	2 cut(s)	187, 372
ApoI	RAATTY	2 cut(s)	229, 631
AspS9I	GGNCC	2 cut(s)	37, 569
AsuHPI	GGTGA	2 cut(s)	338, 704
AvaII	GGWCC	2 cut(s)	37, 569
BanII	GRGCYC	3 cut(s)	263, 290, 766
BarI	GAAGNNNNNNTAC	1 cut(s)	34
Bbv12I	GWGCWC	4 cut(s)	263, 290, 681, 766
BccI	CCATC	2 cut(s)	78, 746
BfaI	CTAG	1 cut(s)	29
BfmI	CTRYAG	2 cut(s)	85, 136
BfuAI	ACCTGC	1 cut(s)	157
BglII	AGATCT	1 cut(s)	25
BisI	GCNGC	1 cut(s)	225
BlsI	GCNGC	1 cut(s)	226
Bme18I	GGWCC	2 cut(s)	37, 569
BmgT120I	GGNCC	2 cut(s)	37, 569
BmiI	GGNNCC	1 cut(s)	39
BmsI	GCATC	2 cut(s)	80, 655
BoxI	GACNNNNGTC	1 cut(s)	333
Bpu10I	CCTNAGC	1 cut(s)	680
BpuEI	CTTGAG	1 cut(s)	750
Bsc4I	CCNNNNNNNGG	1 cut(s)	391
Bse1I	ACTGG	1 cut(s)	49
Bse3DI	GCAATG	3 cut(s)	130, 406, 641
BseGI	GGATG	2 cut(s)	100, 757
BseLI	CCNNNNNNNGG	1 cut(s)	391
BseMI	GCAATG	3 cut(s)	130, 406, 641
BseMII	CTCAG	1 cut(s)	694
BseNI	ACTGG	1 cut(s)	49
BseRI	GAGGAG	1 cut(s)	545
BsgI	GTGCAG	1 cut(s)	196
BshFI	GGCC	2 cut(s)	189, 374
BsiHKAI	GWGCWC	4 cut(s)	263, 290, 681, 766
BslFI	GGGAC	1 cut(s)	23
BslI	CCNNNNNNNGG	1 cut(s)	391
BsmFI	GGGAC	1 cut(s)	23
BsmI	GAATGC	1 cut(s)	366
BsnI	GGCC	2 cut(s)	189, 374
Bsp1286I	GDGCHC	4 cut(s)	263, 290, 681, 766
Bsp143I	GATC	2 cut(s)	25, 740
BspACI	CCGC	1 cut(s)	224
BspANI	GGCC	2 cut(s)	189, 374
BspCNI	CTCAG	1 cut(s)	693
BspHI	TCATGA	2 cut(s)	306, 733
BspLI	GGNNCC	1 cut(s)	39
BspMAI	CTGCAG	1 cut(s)	140
BspMI	ACCTGC	1 cut(s)	157
BspQI	GCTCTTC	1 cut(s)	295
BsrDI	GCAATG	3 cut(s)	130, 406, 641
BsrI	ACTGG	1 cut(s)	49
BssMI	GATC	2 cut(s)	25, 740
Bst4CI	ACNGT	3 cut(s)	115, 202, 458
Bst6I	CTCTTC	1 cut(s)	295
BstC8I	GCNNGC	2 cut(s)	376, 449
BstDEI	CTNAG	4 cut(s)	22, 95, 235, 680
BstF5I	GGATG	2 cut(s)	100, 757
BstKTI	GATC	2 cut(s)	28, 743
BstMBI	GATC	2 cut(s)	25, 740
BstNSI	RCATGY	1 cut(s)	451
BstPAI	GACNNNNGTC	1 cut(s)	333
BstSFI	CTRYAG	2 cut(s)	85, 136
BstX2I	RGATCY	1 cut(s)	25
BstYI	RGATCY	1 cut(s)	25
BsuRI	GGCC	2 cut(s)	189, 374
BtsCI	GGATG	2 cut(s)	100, 757
BtsI	GCAGTG	1 cut(s)	133
BtsIMutI	CAGTG	3 cut(s)	133, 463, 600
BveI	ACCTGC	1 cut(s)	157
Cac8I	GCNNGC	2 cut(s)	376, 449
CciI	TCATGA	2 cut(s)	306, 733
Cfr13I	GGNCC	2 cut(s)	37, 569
CspCI	CAANNNNNGTGG	2 cut(s)	100, 135
CviAII	CATG	8 cut(s)	58, 276, 307, 428, 448, 476, 734, 748
DdeI	CTNAG	4 cut(s)	22, 95, 235, 680
DpnI	GATC	2 cut(s)	27, 742
DpnII	GATC	2 cut(s)	25, 740
Eam1104I	CTCTTC	1 cut(s)	295
EarI	CTCTTC	1 cut(s)	295
Ecl136II	GAGCTC	3 cut(s)	261, 288, 764
Eco147I	AGGCCT	1 cut(s)	189
Eco24I	GRGCYC	3 cut(s)	263, 290, 766
Eco47I	GGWCC	2 cut(s)	37, 569
Eco53kI	GAGCTC	3 cut(s)	261, 288, 764
EcoICRI	GAGCTC	3 cut(s)	261, 288, 764
EcoT38I	GRGCYC	3 cut(s)	263, 290, 766
FaeI	CATG	8 cut(s)	61, 279, 310, 431, 451, 479, 737, 751
FaqI	GGGAC	1 cut(s)	23
FatI	CATG	8 cut(s)	57, 275, 306, 427, 447, 475, 733, 747
FauNDI	CATATG	1 cut(s)	322
Fnu4HI	GCNGC	1 cut(s)	225
FokI	GGATG	2 cut(s)	87, 764
FriOI	GRGCYC	3 cut(s)	263, 290, 766
Fsp4HI	GCNGC	1 cut(s)	225
FspBI	CTAG	1 cut(s)	29
GluI	GCNGC	1 cut(s)	225
HaeIII	GGCC	2 cut(s)	189, 374
Hin1II	CATG	8 cut(s)	61, 279, 310, 431, 451, 479, 737, 751
HindIII	AAGCTT	1 cut(s)	144
HinfI	GANTC	3 cut(s)	514, 626, 667
HphI	GGTGA	2 cut(s)	338, 704
Hpy188I	TCNGA	2 cut(s)	267, 579
Hpy188III	TCNNGA	6 cut(s)	104, 307, 511, 559, 682, 734
HpyAV	CCTTC	1 cut(s)	478
HpyCH4III	ACNGT	3 cut(s)	115, 202, 458
HpyCH4V	TGCA	6 cut(s)	138, 166, 213, 411, 616, 646
HpyF3I	CTNAG	4 cut(s)	22, 95, 235, 680
Hsp92II	CATG	8 cut(s)	61, 279, 310, 431, 451, 479, 737, 751
Kzo9I	GATC	2 cut(s)	25, 740
LguI	GCTCTTC	1 cut(s)	295
LmnI	GCTCC	3 cut(s)	272, 285, 558
LweI	GCATC	2 cut(s)	80, 655
MaeI	CTAG	1 cut(s)	29
MaeIII	GTNAC	3 cut(s)	196, 326, 458
MalI	GATC	2 cut(s)	27, 742
MboI	GATC	2 cut(s)	25, 740
MboII	GAAGA	5 cut(s)	22, 71, 282, 295, 707
MflI	RGATCY	1 cut(s)	25
MhlI	GDGCHC	4 cut(s)	263, 290, 681, 766
MluCI	AATT	6 cut(s)	229, 345, 433, 573, 631, 687
MlyI	GAGTC	2 cut(s)	508, 676
MmeI	TCCRAC	1 cut(s)	679
MnlI	CCTC	5 cut(s)	179, 256, 392, 449, 566
MseI	TTAA	1 cut(s)	524
MslI	CAYNNNNRTG	3 cut(s)	305, 446, 750
MspA1I	CMGCKG	1 cut(s)	224
Mva1269I	GAATGC	1 cut(s)	366
NdeI	CATATG	1 cut(s)	322
NdeII	GATC	2 cut(s)	25, 740
NlaIII	CATG	8 cut(s)	61, 279, 310, 431, 451, 479, 737, 751
NlaIV	GGNNCC	1 cut(s)	39
NmuCI	GTSAC	2 cut(s)	326, 458
NspI	RCATGY	1 cut(s)	451
PaeI	GCATGC	1 cut(s)	451
PagI	TCATGA	2 cut(s)	306, 733
PceI	AGGCCT	1 cut(s)	189
PciSI	GCTCTTC	1 cut(s)	295
PctI	GAATGC	1 cut(s)	366
PfeI	GAWTC	1 cut(s)	626
PkrI	GCNGC	1 cut(s)	226
PleI	GAGTC	2 cut(s)	508, 675
PpsI	GAGTC	2 cut(s)	508, 675
PshAI	GACNNNNGTC	1 cut(s)	333
Psp124BI	GAGCTC	3 cut(s)	263, 290, 766
PspN4I	GGNNCC	1 cut(s)	39
PspPI	GGNCC	2 cut(s)	37, 569
PstI	CTGCAG	1 cut(s)	140
PsuI	RGATCY	1 cut(s)	25
RseI	CAYNNNNRTG	3 cut(s)	305, 446, 750
SacI	GAGCTC	3 cut(s)	263, 290, 766
SapI	GCTCTTC	1 cut(s)	295
SaqAI	TTAA	1 cut(s)	524
SatI	GCNGC	1 cut(s)	225
Sau3AI	GATC	2 cut(s)	25, 740
Sau96I	GGNCC	2 cut(s)	37, 569
SchI	GAGTC	2 cut(s)	508, 676
SduI	GDGCHC	4 cut(s)	263, 290, 681, 766
SetI	ASST	9 cut(s)	148, 171, 241, 248, 263, 290, 532, 766, 772
SfaNI	GCATC	2 cut(s)	80, 655
SfcI	CTRYAG	2 cut(s)	85, 136
SinI	GGWCC	2 cut(s)	37, 569
SmiMI	CAYNNNNRTG	3 cut(s)	305, 446, 750
SmlI	CTYRAG	1 cut(s)	765
SmoI	CTYRAG	1 cut(s)	765
SphI	GCATGC	1 cut(s)	451
Sse9I	AATT	6 cut(s)	229, 345, 433, 573, 631, 687
SseBI	AGGCCT	1 cut(s)	189
SsiI	CCGC	1 cut(s)	224
SspMI	CTAG	1 cut(s)	29
SstI	GAGCTC	3 cut(s)	263, 290, 766
StuI	AGGCCT	1 cut(s)	189
TaaI	ACNGT	3 cut(s)	115, 202, 458
TasI	AATT	6 cut(s)	229, 345, 433, 573, 631, 687
TauI	GCSGC	1 cut(s)	227
TfiI	GAWTC	1 cut(s)	626
Tru1I	TTAA	1 cut(s)	524
Tru9I	TTAA	1 cut(s)	524
TscAI	CASTG	3 cut(s)	140, 463, 600
TseFI	GTSAC	2 cut(s)	326, 458
Tsp45I	GTSAC	2 cut(s)	326, 458
TspDTI	ATGAA	2 cut(s)	295, 750
TspGWI	ACGGA	1 cut(s)	184
TspRI	CASTG	3 cut(s)	140, 463, 600
VpaK11BI	GGWCC	2 cut(s)	37, 569
XapI	RAATTY	2 cut(s)	229, 631
XceI	RCATGY	1 cut(s)	451
XspI	CTAG	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.