Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002711.1

Orthogroup ID

OG0004799

Physical Location & Seq

Genomic Coordinates Forward (+)

93476 .. 94322

Gene Structure 847 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002711.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

atgggttttgggaaggatgatcttgatttggtgttggtcccaagtggattgctgatcatgtttgtttaccacatcaatcttctctacagatatcttcatctccctcacaccacagtcattggctttgaaaacaatgacaaaagagcttgggttgaaagagttatgcaggctgaaagaagagatgttggaatagtacttaatgtgatttcatcaaacacatcagcagcaacatttttgtgttctatctccctaactcttagttcccttattggagcttggcttggaagcaacacaaatggggtctttcagagtgaattagtctacggcaacacaaatccatcaacaattaccatcaagtacataaccctcttaacttgcttccttctcgcattcgcttgctttgttcaatcagcaaggcactttgttcatgccaactacctaataagcacaccagacagtaacattccagcctggtatgtagagatggcagtcataaggggtggtgatttttggtcacttgggctaagagctttgtactttgcccttaccttgcttctatggttttttggtccaattccaatgtttgcctcctccattgttctggtcatggtcctccattaccttgacacaaacaccaggccaatgtttcagcatcagtttagaggaaaggagatggtgaagaaggttgaggagagaatttcagaggtagctgtgacctcacggcaccatcacagagaaaaggttgaaactttggtgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF599

Protein Analysis

252

Amino Acids

28.61

Weight (kDa)

7.81

Isoelectric Point (pI)

26.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004799)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46060
fragaria_vesca	FvH4_3g08420
malus_domestica	MD03G1235700.v1.1 MD05G1308900.v1.1 MD10G1287600.v1.1 MD11G1256800.v1.1
prunus_persica	Prupe.4G173300_v2.0.a1 Prupe.5G016600_v2.0.a1
pyrus_communis	pycom10g24060
rosa_chinensis	RchiOBHm_Chr5g0009451 RchiOBHm_Chr5g0032251
rosa_laevigata	RLG00000031660 RLG00000031663 RLG00000033374
rosa_multiflora	Rmu_sc0002711.1_g000017 Rmu_sc0038269.1_g000002 Rmu_sc0038270.1_g000001 Rmu_sc0038270.1_g000004
rosa_roxburghii	Rroxscaffold_1G00048210 Rroxscaffold_1G00067370
rosa_rugosa	Rorug04G0443200 Rorug05G0130000
rosa_samantha	Rh5AG074200 Rh5AG224000 Rh5BG069900 Rh5BG224700 Rh5CG082400 Rh5DG070300 Rh5DG229200
rosa_wichuraiana	Rw5G006870 Rw5G020420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	723
AccI	GTMKAC	1 cut(s)	321
AcsI	RAATTY	1 cut(s)	696
AfaI	GTAC	3 cut(s)	195, 359, 536
AgsI	TTSAA	4 cut(s)	128, 155, 407, 746
AjnI	CCWGG	2 cut(s)	470, 635
AluBI	AGCT	4 cut(s)	146, 275, 530, 710
AluI	AGCT	4 cut(s)	146, 275, 530, 710
AoxI	GGCC	1 cut(s)	638
ApeKI	GCWGC	1 cut(s)	224
ApoI	RAATTY	1 cut(s)	696
AspS9I	GGNCC	3 cut(s)	37, 569, 610
AsuHPI	GGTGA	2 cut(s)	515, 688
AvaII	GGWCC	3 cut(s)	37, 569, 610
BanI	GGYRCC	1 cut(s)	723
BbvI	GCAGC	1 cut(s)	236
BccI	CCATC	5 cut(s)	346, 359, 478, 667, 735
BceAI	ACGGC	2 cut(s)	340, 737
BciT130I	CCWGG	2 cut(s)	472, 637
BclI	TGATCA	1 cut(s)	54
BfmI	CTRYAG	1 cut(s)	85
BisI	GCNGC	1 cut(s)	225
BlsI	GCNGC	1 cut(s)	226
BmcAI	AGTACT	1 cut(s)	195
Bme1390I	CCNGG	2 cut(s)	472, 637
Bme18I	GGWCC	3 cut(s)	37, 569, 610
BmgT120I	GGNCC	3 cut(s)	37, 569, 610
BmiI	GGNNCC	2 cut(s)	39, 725
BmrFI	CCNGG	2 cut(s)	472, 637
BmsI	GCATC	1 cut(s)	661
BseBI	CCWGG	2 cut(s)	472, 637
BseGI	GGATG	1 cut(s)	22
BseRI	GAGGAG	2 cut(s)	580, 704
BseXI	GCAGC	1 cut(s)	236
BshFI	GGCC	1 cut(s)	640
BshNI	GGYRCC	1 cut(s)	723
BslFI	GGGAC	1 cut(s)	23
BsmFI	GGGAC	1 cut(s)	23
BsmI	GAATGC	1 cut(s)	389
BsnI	GGCC	1 cut(s)	640
Bsp143I	GATC	2 cut(s)	19, 54
BspANI	GGCC	1 cut(s)	640
BspLI	GGNNCC	2 cut(s)	39, 725
BspT107I	GGYRCC	1 cut(s)	723
BssMI	GATC	2 cut(s)	19, 54
Bst2UI	CCWGG	2 cut(s)	472, 637
Bst4CI	ACNGT	2 cut(s)	115, 458
Bst6I	CTCTTC	1 cut(s)	172
BstC8I	GCNNGC	2 cut(s)	168, 397
BstDEI	CTNAG	2 cut(s)	257, 524
BstF5I	GGATG	1 cut(s)	22
BstKTI	GATC	2 cut(s)	22, 57
BstMBI	GATC	2 cut(s)	19, 54
BstNI	CCWGG	2 cut(s)	472, 637
BstSCI	CCNGG	2 cut(s)	470, 635
BstSFI	CTRYAG	1 cut(s)	85
BstV1I	GCAGC	1 cut(s)	236
BstXI	CCANNNNNNTGG	1 cut(s)	601
BsuRI	GGCC	1 cut(s)	640
BtsCI	GGATG	1 cut(s)	22
Cac8I	GCNNGC	2 cut(s)	168, 397
Cfr13I	GGNCC	3 cut(s)	37, 569, 610
Csp6I	GTAC	3 cut(s)	194, 358, 535
CspCI	CAANNNNNGTGG	2 cut(s)	100, 135
CviAII	CATG	3 cut(s)	58, 428, 607
CviQI	GTAC	3 cut(s)	194, 358, 535
DdeI	CTNAG	2 cut(s)	257, 524
DpnI	GATC	2 cut(s)	21, 56
DpnII	GATC	2 cut(s)	19, 54
Eam1104I	CTCTTC	1 cut(s)	172
EarI	CTCTTC	1 cut(s)	172
Eco32I	GATATC	1 cut(s)	92
Eco47I	GGWCC	3 cut(s)	37, 569, 610
EcoRII	CCWGG	2 cut(s)	470, 635
EcoRV	GATATC	1 cut(s)	92
FaeI	CATG	3 cut(s)	61, 431, 610
FaiI	YATR	8 cut(s)	59, 164, 362, 429, 477, 494, 559, 608
FaqI	GGGAC	1 cut(s)	23
FatI	CATG	3 cut(s)	57, 427, 606
FbaI	TGATCA	1 cut(s)	54
FblI	GTMKAC	1 cut(s)	321
Fnu4HI	GCNGC	1 cut(s)	225
FokI	GGATG	1 cut(s)	29
Fsp4HI	GCNGC	1 cut(s)	225
GluI	GCNGC	1 cut(s)	225
HaeIII	GGCC	1 cut(s)	640
Hin1II	CATG	3 cut(s)	61, 431, 610
HphI	GGTGA	2 cut(s)	515, 688
Hpy166II	GTNNAC	2 cut(s)	67, 322
Hpy188I	TCNGA	2 cut(s)	309, 703
Hpy188III	TCNNGA	1 cut(s)	23
Hpy8I	GTNNAC	2 cut(s)	67, 322
HpyAV	CCTTC	3 cut(s)	7, 392, 676
HpyCH4III	ACNGT	2 cut(s)	115, 458
HpyCH4V	TGCA	1 cut(s)	166
HpyF3I	CTNAG	2 cut(s)	257, 524
Hsp92II	CATG	3 cut(s)	61, 431, 610
Ksp22I	TGATCA	1 cut(s)	54
Kzo9I	GATC	2 cut(s)	19, 54
LmnI	GCTCC	1 cut(s)	272
LpnPI	CCDG	8 cut(s)	152, 457, 465, 480, 484, 587, 622, 649
Lsp1109I	GCAGC	1 cut(s)	236
LweI	GCATC	1 cut(s)	661
MaeIII	GTNAC	3 cut(s)	458, 513, 712
MalI	GATC	2 cut(s)	21, 56
MboI	GATC	2 cut(s)	19, 54
MboII	GAAGA	4 cut(s)	71, 86, 189, 691
MluCI	AATT	4 cut(s)	314, 345, 573, 696
MmeI	TCCRAC	1 cut(s)	166
MnlI	CCTC	9 cut(s)	114, 377, 598, 601, 623, 656, 682, 697, 727
MseI	TTAA	2 cut(s)	198, 371
MslI	CAYNNNNRTG	1 cut(s)	235
MspR9I	CCNGG	2 cut(s)	472, 637
Mva1269I	GAATGC	1 cut(s)	389
MvaI	CCWGG	2 cut(s)	472, 637
NdeII	GATC	2 cut(s)	19, 54
NlaIII	CATG	3 cut(s)	61, 431, 610
NlaIV	GGNNCC	2 cut(s)	39, 725
NmuCI	GTSAC	2 cut(s)	513, 712
PctI	GAATGC	1 cut(s)	389
PkrI	GCNGC	1 cut(s)	226
Psp6I	CCWGG	2 cut(s)	470, 635
PspGI	CCWGG	2 cut(s)	470, 635
PspN4I	GGNNCC	2 cut(s)	39, 725
PspPI	GGNCC	3 cut(s)	37, 569, 610
RsaI	GTAC	3 cut(s)	195, 359, 536
RsaNI	GTAC	3 cut(s)	194, 358, 535
RseI	CAYNNNNRTG	1 cut(s)	235
SaqAI	TTAA	2 cut(s)	198, 371
SatI	GCNGC	1 cut(s)	225
Sau3AI	GATC	2 cut(s)	19, 54
Sau96I	GGNCC	3 cut(s)	37, 569, 610
ScaI	AGTACT	1 cut(s)	195
ScrFI	CCNGG	2 cut(s)	472, 637
SfaNI	GCATC	1 cut(s)	661
SfcI	CTRYAG	1 cut(s)	85
SinI	GGWCC	3 cut(s)	37, 569, 610
SmiMI	CAYNNNNRTG	1 cut(s)	235
Sse9I	AATT	4 cut(s)	314, 345, 573, 696
StyD4I	CCNGG	2 cut(s)	470, 635
TaaI	ACNGT	2 cut(s)	115, 458
TasI	AATT	4 cut(s)	314, 345, 573, 696
TatI	WGTACW	3 cut(s)	193, 357, 534
Tru1I	TTAA	2 cut(s)	198, 371
Tru9I	TTAA	2 cut(s)	198, 371
TseFI	GTSAC	2 cut(s)	513, 712
TseI	GCWGC	1 cut(s)	224
Tsp45I	GTSAC	2 cut(s)	513, 712
TspDTI	ATGAA	3 cut(s)	86, 198, 416
VpaK11BI	GGWCC	3 cut(s)	37, 569, 610
XapI	RAATTY	1 cut(s)	696
XmiI	GTMKAC	1 cut(s)	321
ZrmI	AGTACT	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.