Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0038270.1

Orthogroup ID

OG0004799

Physical Location & Seq

Genomic Coordinates Forward (+)

11279 .. 14679

Gene Structure 3401 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0038270.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

atgggcaacccagctggggtgactagggaagccatgtgttatggtttcagaatcaaagcatattataatgtggaaatagcatttaatttggagaagaacatagatttgaaagcctcgaagcccgcggcggctcagcagcagccgatgattcagccgccgaggtcgtcttgttcttttccgatacaagcgggcgggggtccggtttcgatggccgagatcatagggcagaagctggttgggtctactgcctatgagccgtttgtgctcacgcgctgcaagtcggagccgatgaggtcggcggctaagcttgcgccggaggcttgcttttggaagaacaggaagcacgagccgcatcgccacccgggtccgctcggagtcggggcgaccggagtcggatgcctaaggcatcctgaaaccacagtcattggcaatgaaaaccactgtagaaaagcttgggttgagagaatgttgcagattgaagcaaaggatcgaggtcagtccctagcagtaatctccagcactataacagcagcaaatttcttggcttctacctctttagccttgagttctttgattggaacatgggttctaaactcatcaaacagcatcctcctcactagttttacgtatggtgacacaagtgctgcaatgaattctattaaatacgttagcattctggcctgcttcctattagctctggcttctttcttacactgtataagaagctttatccatgccactttcctcattagcatgccaaacagtgatactcctctgagtgatgttcagaaggctgtgatacatggcggccttttttggacattggggttgagagcaatctattttgccactaatttactcctctgggtttttggtccaattccgatgtttgtgtgttcagtgactttggtgttgattctgaacaagctggattcgaattccactccattgcatcagttccaaccagccaggagtcaggacaataggttgatggggaaacttgctgaagaaaaaacccaaatagatagggttatcgagcaacacgaaagatcacacatagatgataacagaactcaaggttctaactgtcaacaatcacctgcctctggtaaggatttaagttcagaggcaacaggttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF599

Protein Analysis

379

Amino Acids

41.35

Weight (kDa)

8.88

Isoelectric Point (pI)

43.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004799)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46060
fragaria_vesca	FvH4_3g08420
malus_domestica	MD03G1235700.v1.1 MD05G1308900.v1.1 MD10G1287600.v1.1 MD11G1256800.v1.1
prunus_persica	Prupe.4G173300_v2.0.a1 Prupe.5G016600_v2.0.a1
pyrus_communis	pycom10g24060
rosa_chinensis	RchiOBHm_Chr5g0009451 RchiOBHm_Chr5g0032251
rosa_laevigata	RLG00000031660 RLG00000031663 RLG00000033374
rosa_multiflora	Rmu_sc0002711.1_g000017 Rmu_sc0038269.1_g000002 Rmu_sc0038270.1_g000001 Rmu_sc0038270.1_g000004
rosa_roxburghii	Rroxscaffold_1G00048210 Rroxscaffold_1G00067370
rosa_rugosa	Rorug04G0443200 Rorug05G0130000
rosa_samantha	Rh5AG074200 Rh5AG224000 Rh5BG069900 Rh5BG224700 Rh5CG082400 Rh5DG070300 Rh5DG229200
rosa_wichuraiana	Rw5G006870 Rw5G020420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	66
AarI	CACCTGC	1 cut(s)	1108
Acc36I	ACCTGC	1 cut(s)	1108
AccBSI	CCGCTC	1 cut(s)	370
AccI	GTMKAC	1 cut(s)	242
AccII	CGCG	2 cut(s)	125, 271
AclWI	GGATC	1 cut(s)	495
AcoI	YGGCCR	1 cut(s)	210
AcsI	RAATTY	3 cut(s)	535, 652, 937
AcuI	CTGAAG	1 cut(s)	1026
AfiI	CCNNNNNNNGG	2 cut(s)	16, 1106
AgsI	TTSAA	2 cut(s)	109, 479
AhlI	ACTAGT	1 cut(s)	617
AjnI	CCWGG	1 cut(s)	968
AloI	GAACNNNNNNTCC	2 cut(s)	570, 602
AluBI	AGCT	7 cut(s)	14, 232, 307, 452, 695, 726, 928
AluI	AGCT	7 cut(s)	14, 232, 307, 452, 695, 726, 928
Alw21I	GWGCWC	1 cut(s)	267
AlwI	GGATC	1 cut(s)	495
AlwNI	CAGNNNCTG	1 cut(s)	232
Ama87I	CYCGRG	1 cut(s)	361
AoxI	GGCC	3 cut(s)	210, 678, 808
ApeKI	GCWGC	5 cut(s)	136, 139, 273, 530, 644
ApoI	RAATTY	3 cut(s)	535, 652, 937
AspLEI	GCGC	2 cut(s)	273, 313
AspS9I	GGNCC	3 cut(s)	197, 365, 875
AsuC2I	CCSGG	2 cut(s)	362, 363
AsuHPI	GGTGA	3 cut(s)	31, 644, 1089
AsuII	TTCGAA	1 cut(s)	935
AvaI	CYCGRG	1 cut(s)	361
AvaII	GGWCC	3 cut(s)	197, 365, 875
AxyI	CCTNAGG	1 cut(s)	401
BauI	CACGAG	1 cut(s)	344
Bbv12I	GWGCWC	1 cut(s)	267
BbvI	GCAGC	5 cut(s)	148, 151, 260, 542, 631
BccI	CCATC	2 cut(s)	202, 985
BceAI	ACGGC	1 cut(s)	241
BciT130I	CCWGG	1 cut(s)	970
BcnI	CCSGG	2 cut(s)	362, 363
BcuI	ACTAGT	1 cut(s)	617
BfaI	CTAG	3 cut(s)	24, 503, 618
BfmI	CTRYAG	1 cut(s)	442
BfuAI	ACCTGC	1 cut(s)	1108
BlpI	GCTNAGC	2 cut(s)	132, 303
Bme1390I	CCNGG	3 cut(s)	362, 363, 970
Bme18I	GGWCC	3 cut(s)	197, 365, 875
BmeT110I	CYCGRG	1 cut(s)	361
BmgT120I	GGNCC	3 cut(s)	197, 365, 875
BmiI	GGNNCC	3 cut(s)	198, 285, 366
BmrFI	CCNGG	3 cut(s)	362, 363, 970
BmsI	GCATC	5 cut(s)	361, 386, 415, 615, 961
BoxI	GACNNNNGTC	1 cut(s)	389
BpmI	CTGGAG	1 cut(s)	499
Bpu1102I	GCTNAGC	2 cut(s)	132, 303
Bpu14I	TTCGAA	1 cut(s)	935
BpuEI	CTTGAG	2 cut(s)	583, 1059
BpuMI	CCSGG	2 cut(s)	362, 363
BsaAI	YACGTR	1 cut(s)	627
BsaJI	CCNNGG	3 cut(s)	123, 158, 361
BsaWI	WCCGGW	2 cut(s)	199, 386
Bsc4I	CCNNNNNNNGG	2 cut(s)	16, 1106
Bse21I	CCTNAGG	1 cut(s)	401
Bse3DI	GCAATG	3 cut(s)	436, 654, 947
BseBI	CCWGG	1 cut(s)	970
BseDI	CCNNGG	3 cut(s)	123, 158, 361
BseGI	GGATG	3 cut(s)	401, 406, 606
BseLI	CCNNNNNNNGG	2 cut(s)	16, 1106
BseMI	GCAATG	3 cut(s)	436, 654, 947
BseMII	CTCAG	2 cut(s)	146, 767
BseRI	GAGGAG	3 cut(s)	602, 762, 851
BseXI	GCAGC	5 cut(s)	148, 151, 260, 542, 631
BseYI	CCCAGC	2 cut(s)	10, 14
Bsh1236I	CGCG	2 cut(s)	125, 271
Bsh1285I	CGRYCG	1 cut(s)	387
BshFI	GGCC	3 cut(s)	212, 680, 810
BsiEI	CGRYCG	1 cut(s)	387
BsiHKAI	GWGCWC	1 cut(s)	267
BsiHKCI	CYCGRG	1 cut(s)	361
BsiSI	CCGG	4 cut(s)	200, 314, 362, 387
BslFI	GGGAC	1 cut(s)	484
BslI	CCNNNNNNNGG	2 cut(s)	16, 1106
BsmFI	GGGAC	1 cut(s)	484
BsmI	GAATGC	1 cut(s)	672
BsnI	GGCC	3 cut(s)	212, 680, 810
BsoBI	CYCGRG	1 cut(s)	361
Bsp119I	TTCGAA	1 cut(s)	935
Bsp1286I	GDGCHC	1 cut(s)	267
Bsp143I	GATC	3 cut(s)	216, 487, 1049
Bsp1720I	GCTNAGC	2 cut(s)	132, 303
BspANI	GGCC	3 cut(s)	212, 680, 810
BspCNI	CTCAG	2 cut(s)	145, 768
BspFNI	CGCG	2 cut(s)	125, 271
BspLI	GGNNCC	3 cut(s)	198, 285, 366
BspMI	ACCTGC	1 cut(s)	1108
BspPI	GGATC	1 cut(s)	495
BspT104I	TTCGAA	1 cut(s)	935
BsrBI	CCGCTC	1 cut(s)	370
BsrDI	GCAATG	3 cut(s)	436, 654, 947
BssECI	CCNNGG	3 cut(s)	123, 158, 361
BssMI	GATC	3 cut(s)	216, 487, 1049
BssSI	CACGAG	1 cut(s)	344
Bst2BI	CACGAG	1 cut(s)	344
Bst2UI	CCWGG	1 cut(s)	970
Bst4CI	ACNGT	5 cut(s)	421, 443, 716, 764, 1088
BstBAI	YACGTR	1 cut(s)	627
BstBI	TTCGAA	1 cut(s)	935
BstC8I	GCNNGC	6 cut(s)	123, 190, 309, 322, 682, 755
BstDEI	CTNAG	4 cut(s)	132, 303, 401, 776
BstDSI	CCRYGG	1 cut(s)	123
BstF5I	GGATG	3 cut(s)	401, 406, 606
BstFNI	CGCG	2 cut(s)	125, 271
BstHHI	GCGC	2 cut(s)	273, 313
BstKTI	GATC	3 cut(s)	219, 490, 1052
BstMBI	GATC	3 cut(s)	216, 487, 1049
BstMCI	CGRYCG	1 cut(s)	387
BstMWI	GCNNNNNNNGC	4 cut(s)	262, 308, 317, 349
BstNI	CCWGG	1 cut(s)	970
BstNSI	RCATGY	1 cut(s)	757
BstPAI	GACNNNNGTC	1 cut(s)	389
BstSCI	CCNGG	3 cut(s)	360, 361, 968
BstSFI	CTRYAG	1 cut(s)	442
BstSNI	TACGTA	1 cut(s)	627
BstUI	CGCG	2 cut(s)	125, 271
BstV1I	GCAGC	5 cut(s)	148, 151, 260, 542, 631
Bsu36I	CCTNAGG	1 cut(s)	401
BsuRI	GGCC	3 cut(s)	212, 680, 810
BtgI	CCRYGG	1 cut(s)	123
BtgZI	GCGATG	1 cut(s)	338
BtsCI	GGATG	3 cut(s)	401, 406, 606
BtsIMutI	CAGTG	4 cut(s)	439, 712, 769, 906
BveI	ACCTGC	1 cut(s)	1108
Cac8I	GCNNGC	6 cut(s)	123, 190, 309, 322, 682, 755
CaiI	CAGNNNCTG	1 cut(s)	232
CfoI	GCGC	2 cut(s)	273, 313
Cfr13I	GGNCC	3 cut(s)	197, 365, 875
Cfr42I	CCGCGG	1 cut(s)	126
Cfr9I	CCCGGG	1 cut(s)	361
CspCI	CAANNNNNGTGG	2 cut(s)	406, 441
CviAII	CATG	5 cut(s)	34, 582, 734, 754, 803
DdeI	CTNAG	4 cut(s)	132, 303, 401, 776
DpnI	GATC	3 cut(s)	218, 489, 1051
DpnII	GATC	3 cut(s)	216, 487, 1049
EaeI	YGGCCR	1 cut(s)	210
Eco105I	TACGTA	1 cut(s)	627
Eco47I	GGWCC	3 cut(s)	197, 365, 875
Eco57I	CTGAAG	1 cut(s)	1026
Eco81I	CCTNAGG	1 cut(s)	401
Eco88I	CYCGRG	1 cut(s)	361
EcoRI	GAATTC	2 cut(s)	652, 937
EcoRII	CCWGG	1 cut(s)	968
FaeI	CATG	5 cut(s)	37, 585, 737, 757, 806
FaqI	GGGAC	1 cut(s)	484
FatI	CATG	5 cut(s)	33, 581, 733, 753, 802
FauI	CCCGC	3 cut(s)	130, 181, 185
FblI	GTMKAC	1 cut(s)	242
FokI	GGATG	3 cut(s)	393, 408, 593
FspBI	CTAG	3 cut(s)	24, 503, 618
GlaI	GCGC	2 cut(s)	272, 312
GsaI	CCCAGC	2 cut(s)	14, 18
GsuI	CTGGAG	1 cut(s)	499
HaeIII	GGCC	3 cut(s)	212, 680, 810
HapII	CCGG	4 cut(s)	200, 314, 362, 387
HhaI	GCGC	2 cut(s)	273, 313
Hin1II	CATG	5 cut(s)	37, 585, 737, 757, 806
Hin6I	GCGC	2 cut(s)	271, 311
HinP1I	GCGC	2 cut(s)	271, 311
HincII	GTYRAC	1 cut(s)	1091
HindII	GTYRAC	1 cut(s)	1091
HindIII	AAGCTT	3 cut(s)	305, 450, 724
HinfI	GANTC	7 cut(s)	51, 148, 375, 390, 916, 932, 973
HpaII	CCGG	4 cut(s)	200, 314, 362, 387
HphI	GGTGA	3 cut(s)	31, 644, 1089
Hpy166II	GTNNAC	2 cut(s)	243, 1091
Hpy188III	TCNNGA	2 cut(s)	410, 977
Hpy8I	GTNNAC	2 cut(s)	243, 1091
HpyAV	CCTTC	1 cut(s)	784
HpyCH4III	ACNGT	5 cut(s)	421, 443, 716, 764, 1088
HpyCH4IV	ACGT	2 cut(s)	626, 666
HpyCH4V	TGCA	4 cut(s)	276, 472, 647, 952
HpyF10VI	GCNNNNNNNGC	4 cut(s)	262, 308, 317, 349
HpyF3I	CTNAG	4 cut(s)	132, 303, 401, 776
HpySE526I	ACGT	2 cut(s)	626, 666
Hsp92II	CATG	5 cut(s)	37, 585, 737, 757, 806
HspAI	GCGC	2 cut(s)	271, 311
KspI	CCGCGG	1 cut(s)	126
Kzo9I	GATC	3 cut(s)	216, 487, 1049
LmnI	GCTCC	1 cut(s)	283
Lsp1109I	GCAGC	5 cut(s)	148, 151, 260, 542, 631
LweI	GCATC	5 cut(s)	361, 386, 415, 615, 961
MaeI	CTAG	3 cut(s)	24, 503, 618
MaeII	ACGT	2 cut(s)	626, 666
MaeIII	GTNAC	3 cut(s)	19, 632, 901
MalI	GATC	3 cut(s)	218, 489, 1051
MbiI	CCGCTC	1 cut(s)	370
MboI	GATC	3 cut(s)	216, 487, 1049
MboII	GAAGA	3 cut(s)	106, 343, 1019
MhlI	GDGCHC	1 cut(s)	267
MluCI	AATT	6 cut(s)	85, 535, 652, 853, 879, 937
MlyI	GAGTC	3 cut(s)	384, 399, 982
MmeI	TCCRAC	3 cut(s)	261, 373, 985
MseI	TTAA	4 cut(s)	84, 660, 1118, 1138
MslI	CAYNNNNRTG	2 cut(s)	752, 1059
MspA1I	CMGCKG	2 cut(s)	14, 125
MspI	CCGG	4 cut(s)	200, 314, 362, 387
MspR9I	CCNGG	3 cut(s)	362, 363, 970
Mva1269I	GAATGC	1 cut(s)	672
MvaI	CCWGG	1 cut(s)	970
MvnI	CGCG	2 cut(s)	125, 271
MwoI	GCNNNNNNNGC	4 cut(s)	262, 308, 317, 349
NciI	CCSGG	2 cut(s)	362, 363
NdeII	GATC	3 cut(s)	216, 487, 1049
NlaIII	CATG	5 cut(s)	37, 585, 737, 757, 806
NlaIV	GGNNCC	3 cut(s)	198, 285, 366
NmeAIII	GCCGAG	2 cut(s)	183, 238
NmuCI	GTSAC	3 cut(s)	19, 632, 901
NspI	RCATGY	1 cut(s)	757
NspV	TTCGAA	1 cut(s)	935
PaeI	GCATGC	1 cut(s)	757
PaqCI	CACCTGC	1 cut(s)	1108
PcsI	WCGNNNNNNNCGW	1 cut(s)	1041
PctI	GAATGC	1 cut(s)	672
PfeI	GAWTC	4 cut(s)	51, 148, 916, 932
PleI	GAGTC	3 cut(s)	383, 398, 981
PpsI	GAGTC	3 cut(s)	383, 398, 981
Ppu21I	YACGTR	1 cut(s)	627
PshAI	GACNNNNGTC	1 cut(s)	389
PsiI	TTATAA	1 cut(s)	66
Psp6I	CCWGG	1 cut(s)	968
PspFI	CCCAGC	2 cut(s)	10, 14
PspGI	CCWGG	1 cut(s)	968
PspN4I	GGNNCC	3 cut(s)	198, 285, 366
PspPI	GGNCC	3 cut(s)	197, 365, 875
PstNI	CAGNNNCTG	1 cut(s)	232
PvuII	CAGCTG	1 cut(s)	14
RseI	CAYNNNNRTG	2 cut(s)	752, 1059
SacII	CCGCGG	1 cut(s)	126
SaqAI	TTAA	4 cut(s)	84, 660, 1118, 1138
Sau3AI	GATC	3 cut(s)	216, 487, 1049
Sau96I	GGNCC	3 cut(s)	197, 365, 875
SchI	GAGTC	3 cut(s)	384, 399, 982
ScrFI	CCNGG	3 cut(s)	362, 363, 970
SduI	GDGCHC	1 cut(s)	267
SfaNI	GCATC	5 cut(s)	361, 386, 415, 615, 961
SfcI	CTRYAG	1 cut(s)	442
Sfr303I	CCGCGG	1 cut(s)	126
SfuI	TTCGAA	1 cut(s)	935
SgrBI	CCGCGG	1 cut(s)	126
SinI	GGWCC	3 cut(s)	197, 365, 875
SmaI	CCCGGG	1 cut(s)	363
SmiMI	CAYNNNNRTG	2 cut(s)	752, 1059
SmlI	CTYRAG	2 cut(s)	562, 1074
SmoI	CTYRAG	2 cut(s)	562, 1074
SnaBI	TACGTA	1 cut(s)	627
SpeI	ACTAGT	1 cut(s)	617
SphI	GCATGC	1 cut(s)	757
Sse9I	AATT	6 cut(s)	85, 535, 652, 853, 879, 937
SspMI	CTAG	3 cut(s)	24, 503, 618
StyD4I	CCNGG	3 cut(s)	360, 361, 968
TaaI	ACNGT	5 cut(s)	421, 443, 716, 764, 1088
TaiI	ACGT	2 cut(s)	629, 669
TaqI	TCGA	5 cut(s)	116, 206, 490, 935, 1035
TasI	AATT	6 cut(s)	85, 535, 652, 853, 879, 937
TauI	GCSGC	6 cut(s)	128, 131, 157, 302, 352, 810
TfiI	GAWTC	4 cut(s)	51, 148, 916, 932
Tru1I	TTAA	4 cut(s)	84, 660, 1118, 1138
Tru9I	TTAA	4 cut(s)	84, 660, 1118, 1138
TscAI	CASTG	4 cut(s)	446, 719, 769, 906
TseFI	GTSAC	3 cut(s)	19, 632, 901
TseI	GCWGC	5 cut(s)	136, 139, 273, 530, 644
Tsp45I	GTSAC	3 cut(s)	19, 632, 901
TspDTI	ATGAA	2 cut(s)	447, 665
TspMI	CCCGGG	1 cut(s)	361
TspRI	CASTG	4 cut(s)	446, 719, 769, 906
VpaK11BI	GGWCC	3 cut(s)	197, 365, 875
XapI	RAATTY	3 cut(s)	535, 652, 937
XceI	RCATGY	1 cut(s)	757
XmaI	CCCGGG	1 cut(s)	361
XmiI	GTMKAC	1 cut(s)	242
XspI	CTAG	3 cut(s)	24, 503, 618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.