MD03G1258000.v1.1

Cupin-like domain

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Forward (+)
34515759 .. 34519108
3350 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1258000.v1.1.491

Sequence Viewer

Length: 1041 bp
ATGGAGTCGGCTCTGCGAGTTCGAAGCTTGAACGAAGTTCCTTCGGCCGGAGACTTCGCGTCTGGGATCGAATCCACGAACGTTCCCGCCGTTTTTAGCGGCTGCGTCAAAGATTGGAAAGCTTTCTCCAATTGGAATCCATGTAATGGCGGTCTCGATTATTTGCAGGAACGAGTCGGATTGTGTGTTGTGGAGGCTATGCTATCTGATTCGGCACCTGTCTTCTACGGTGATATTAGAAGCCATGAGAGGGTACCGCTGCCATTTTCTGCATTCATTGGTCTATGTAAGAAACGCATGCATCATTCAGAGGATGGTTCCTGTGTTAAATTAGATCGGCATGGGCTACCGGAGGCTTCATCTGAGTATGACAGTAAGCCATATGAGGATGCTCCTCACCAAATCTATTTAGCACAGGTCCCAATAATCAATACTGAAACTGAAGAGAGGGTTCAACTGGGATCTTTGAGGGAGGACATCCAAACGCCTGTATTTTTGGAGGATAAAGTACTAGTTGCTATCAACCTGTGGATGAACAATGCTCAAGCTAGATCAAGCACTCACTATGATCCACACCATAACCTTCTCTGCGTAGTCTCTGGCTGCAAACAAGTGGTTTTGTGGCCTCCTTCAGCAAGTTCTATGTTATACCCTATGCCAATATATGGGGAGGCATCAAATCATAGTTTTGTTCCTTTAGAGAACCCAAACTTTTCAAATTATCCAAGAGCACAATGTTTAATGGAGCACTCGCAGAAGGTTATTCTTCAGGCAGGCGACGCACTTTTCATTCCTGAAGGCTGGTTCCACCAGGTGGACAGTGATGATCTAACCATTGCCGTGAACTTTTGGTGGCGGTCCAATGTAACGTTAAACATGTCAGAACACATGGATGCATATTATCTGCGCATATTATTAAGAAGACTGATAGATAGAGAAATGGACCGAGTGCTGCCTATAGCTTCTTTAGCTCAAATGGAGAACATGAACAGGCATACTGGAATAGTGCTTAAAAAAGGACAGATAAGTCAGTTTCTATGA

Protein Analysis

347

Amino Acids

39.11

Weight (kDa)

5.52

Isoelectric Point (pI)

50.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_8 PF13621 21 - 288 9.1e-52 Cupin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1026
Acc16I TGCGCA 1 cut(s) 908
Acc65I GGTACC 1 cut(s) 253
AccB1I GGYRCC 2 cut(s) 214, 253
AccB7I CCANNNNNTGG 3 cut(s) 146, 665, 814
AccII CGCG 1 cut(s) 59
AciI CCGC 5 cut(s) 87, 99, 150, 257, 856
AclI AACGTT 2 cut(s) 81, 869
AclWI GGATC 3 cut(s) 74, 469, 563
AcoI YGGCCR 1 cut(s) 45
AcuI CTGAAG 4 cut(s) 462, 615, 752, 816
AdeI CACNNNGTG 1 cut(s) 814
AfaI GTAC 2 cut(s) 255, 510
AfiI CCNNNNNNNGG 5 cut(s) 47, 146, 250, 665, 814
AflIII ACRYGT 1 cut(s) 876
AgsI TTSAA 3 cut(s) 31, 455, 717
AhdI GACNNNNNGTC 1 cut(s) 58
AhlI ACTAGT 1 cut(s) 511
AjnI CCWGG 1 cut(s) 810
AluBI AGCT 5 cut(s) 27, 122, 548, 962, 971
AluI AGCT 5 cut(s) 27, 122, 548, 962, 971
Alw21I GWGCWC 2 cut(s) 733, 750
Alw26I GTCTC 3 cut(s) 45, 158, 601
AlwI GGATC 3 cut(s) 74, 469, 563
AoxI GGCC 2 cut(s) 45, 623
ApeKI GCWGC 4 cut(s) 102, 259, 603, 952
Asp700I GAANNNNTTC 1 cut(s) 122
Asp718I GGTACC 1 cut(s) 253
AspLEI GCGC 1 cut(s) 909
AspS9I GGNCC 3 cut(s) 418, 858, 943
AsuHPI GGTGA 2 cut(s) 242, 389
AsuII TTCGAA 1 cut(s) 22
AvaII GGWCC 3 cut(s) 418, 858, 943
BanI GGYRCC 2 cut(s) 214, 253
BbsI GAAGAC 2 cut(s) 214, 928
Bbv12I GWGCWC 2 cut(s) 733, 750
BbvI GCAGC 4 cut(s) 89, 246, 590, 939
BccI CCATC 1 cut(s) 308
BceAI ACGGC 2 cut(s) 74, 824
BciT130I CCWGG 1 cut(s) 812
BcoDI GTCTC 3 cut(s) 45, 158, 601
BcuI ACTAGT 1 cut(s) 511
BfaI CTAG 2 cut(s) 512, 549
BfmI CTRYAG 1 cut(s) 957
BisI GCNGC 5 cut(s) 100, 103, 260, 604, 953
BlsI GCNGC 5 cut(s) 101, 104, 261, 605, 954
BmcAI AGTACT 1 cut(s) 510
Bme1390I CCNGG 1 cut(s) 812
Bme18I GGWCC 3 cut(s) 418, 858, 943
BmeRI GACNNNNNGTC 1 cut(s) 58
BmgT120I GGNCC 3 cut(s) 418, 858, 943
BmiI GGNNCC 5 cut(s) 216, 255, 319, 420, 806
BmrFI CCNGG 1 cut(s) 812
BmrI ACTGGG 1 cut(s) 467
BmsI GCATC 4 cut(s) 310, 379, 683, 883
BmuI ACTGGG 1 cut(s) 467
BpiI GAAGAC 2 cut(s) 214, 928
Bpu14I TTCGAA 1 cut(s) 22
BpuEI CTTGAG 1 cut(s) 528
BsaI GGTCTC 1 cut(s) 158
BsaWI WCCGGW 1 cut(s) 349
Bsc4I CCNNNNNNNGG 5 cut(s) 47, 146, 250, 665, 814
Bse1I ACTGG 2 cut(s) 462, 1003
Bse3DI GCAATG 1 cut(s) 834
BseBI CCWGG 1 cut(s) 812
BseGI GGATG 5 cut(s) 319, 394, 477, 537, 898
BseLI CCNNNNNNNGG 5 cut(s) 47, 146, 250, 665, 814
BseMI GCAATG 1 cut(s) 834
BseMII CTCAG 1 cut(s) 354
BseNI ACTGG 2 cut(s) 462, 1003
BseRI GAGGAG 1 cut(s) 384
BseX3I CGGCCG 1 cut(s) 45
BseXI GCAGC 4 cut(s) 89, 246, 590, 939
Bsh1236I CGCG 1 cut(s) 59
Bsh1285I CGRYCG 1 cut(s) 48
BshFI GGCC 2 cut(s) 47, 625
BshNI GGYRCC 2 cut(s) 214, 253
BsiEI CGRYCG 1 cut(s) 48
BsiHKAI GWGCWC 2 cut(s) 733, 750
BsiSI CCGG 2 cut(s) 48, 350
BslFI GGGAC 1 cut(s) 404
BslI CCNNNNNNNGG 5 cut(s) 47, 146, 250, 665, 814
BsmAI GTCTC 3 cut(s) 45, 158, 601
BsmFI GGGAC 1 cut(s) 404
BsmI GAATGC 1 cut(s) 272
BsnI GGCC 2 cut(s) 47, 625
Bso31I GGTCTC 1 cut(s) 158
Bsp119I TTCGAA 1 cut(s) 22
Bsp1286I GDGCHC 2 cut(s) 733, 750
Bsp143I GATC 6 cut(s) 66, 334, 461, 551, 568, 826
BspACI CCGC 5 cut(s) 87, 99, 150, 257, 856
BspANI GGCC 2 cut(s) 47, 625
BspCNI CTCAG 1 cut(s) 355
BspFNI CGCG 1 cut(s) 59
BspLI GGNNCC 5 cut(s) 216, 255, 319, 420, 806
BspPI GGATC 3 cut(s) 74, 469, 563
BspT104I TTCGAA 1 cut(s) 22
BspT107I GGYRCC 2 cut(s) 214, 253
BspTNI GGTCTC 1 cut(s) 158
BsrDI GCAATG 1 cut(s) 834
BsrI ACTGG 2 cut(s) 462, 1003
BssMI GATC 6 cut(s) 66, 334, 461, 551, 568, 826
Bst2UI CCWGG 1 cut(s) 812
Bst4CI ACNGT 3 cut(s) 230, 374, 821
Bst6I CTCTTC 1 cut(s) 438
BstBI TTCGAA 1 cut(s) 22
BstC8I GCNNGC 2 cut(s) 299, 775
BstDEI CTNAG 1 cut(s) 363
BstF5I GGATG 5 cut(s) 319, 394, 477, 537, 898
BstFNI CGCG 1 cut(s) 59
BstHHI GCGC 1 cut(s) 909
BstKTI GATC 6 cut(s) 69, 337, 464, 554, 571, 829
BstMAI GTCTC 3 cut(s) 45, 158, 601
BstMBI GATC 6 cut(s) 66, 334, 461, 551, 568, 826
BstMCI CGRYCG 1 cut(s) 48
BstMWI GCNNNNNNNGC 2 cut(s) 779, 968
BstNI CCWGG 1 cut(s) 812
BstNSI RCATGY 2 cut(s) 301, 880
BstSCI CCNGG 1 cut(s) 810
BstSFI CTRYAG 1 cut(s) 957
BstUI CGCG 1 cut(s) 59
BstV1I GCAGC 4 cut(s) 89, 246, 590, 939
BstV2I GAAGAC 2 cut(s) 214, 928
BstX2I RGATCY 1 cut(s) 461
BstYI RGATCY 1 cut(s) 461
BstZI CGGCCG 1 cut(s) 45
BsuRI GGCC 2 cut(s) 47, 625
BtsCI GGATG 5 cut(s) 319, 394, 477, 537, 898
BtsIMutI CAGTG 1 cut(s) 826
Cac8I GCNNGC 2 cut(s) 299, 775
CfoI GCGC 1 cut(s) 909
Cfr13I GGNCC 3 cut(s) 418, 858, 943
CseI GACGC 3 cut(s) 48, 94, 788
CsiI ACCWGGT 1 cut(s) 810
Csp6I GTAC 2 cut(s) 254, 509
CviAII CATG 7 cut(s) 141, 245, 298, 341, 877, 889, 985
CviQI GTAC 2 cut(s) 254, 509
DdeI CTNAG 1 cut(s) 363
DpnI GATC 6 cut(s) 68, 336, 463, 553, 570, 828
DpnII GATC 6 cut(s) 66, 334, 461, 551, 568, 826
DraIII CACNNNGTG 1 cut(s) 814
DrdI GACNNNNNNGTC 1 cut(s) 1026
DriI GACNNNNNGTC 1 cut(s) 58
DseDI GACNNNNNNGTC 1 cut(s) 1026
EaeI YGGCCR 1 cut(s) 45
EagI CGGCCG 1 cut(s) 45
Eam1104I CTCTTC 1 cut(s) 438
Eam1105I GACNNNNNGTC 1 cut(s) 58
EarI CTCTTC 1 cut(s) 438
EclXI CGGCCG 1 cut(s) 45
Eco31I GGTCTC 1 cut(s) 158
Eco47I GGWCC 3 cut(s) 418, 858, 943
Eco52I CGGCCG 1 cut(s) 45
Eco57I CTGAAG 4 cut(s) 462, 615, 752, 816
EcoO109I RGGNCCY 1 cut(s) 418
EcoRII CCWGG 1 cut(s) 810
EcoT22I ATGCAT 2 cut(s) 303, 898
FaeI CATG 7 cut(s) 144, 248, 301, 344, 880, 892, 988
FaqI GGGAC 1 cut(s) 404
FatI CATG 7 cut(s) 140, 244, 297, 340, 876, 888, 984
FauI CCCGC 1 cut(s) 94
FauNDI CATATG 1 cut(s) 382
Fnu4HI GCNGC 5 cut(s) 100, 103, 260, 604, 953
FokI GGATG 5 cut(s) 326, 401, 464, 544, 905
Fsp4HI GCNGC 5 cut(s) 100, 103, 260, 604, 953
FspBI CTAG 2 cut(s) 512, 549
FspI TGCGCA 1 cut(s) 908
GlaI GCGC 1 cut(s) 908
GluI GCNGC 5 cut(s) 100, 103, 260, 604, 953
HaeIII GGCC 2 cut(s) 47, 625
HapII CCGG 2 cut(s) 48, 350
HgaI GACGC 3 cut(s) 48, 94, 788
HhaI GCGC 1 cut(s) 909
Hin1II CATG 7 cut(s) 144, 248, 301, 344, 880, 892, 988
Hin6I GCGC 1 cut(s) 907
HinP1I GCGC 1 cut(s) 907
HindIII AAGCTT 2 cut(s) 25, 120
HinfI GANTC 5 cut(s) 5, 71, 136, 174, 209
HpaII CCGG 2 cut(s) 48, 350
HphI GGTGA 2 cut(s) 242, 389
Hpy166II GTNNAC 2 cut(s) 817, 844
Hpy188I TCNGA 5 cut(s) 179, 208, 310, 364, 883
Hpy188III TCNNGA 2 cut(s) 155, 794
Hpy8I GTNNAC 2 cut(s) 817, 844
Hpy99I CGWCG 1 cut(s) 782
HpyAV CCTTC 5 cut(s) 51, 593, 639, 751, 791
HpyCH4III ACNGT 3 cut(s) 230, 374, 821
HpyCH4IV ACGT 2 cut(s) 81, 869
HpyCH4V TGCA 5 cut(s) 166, 272, 301, 606, 896
HpyF10VI GCNNNNNNNGC 2 cut(s) 779, 968
HpyF3I CTNAG 1 cut(s) 363
HpySE526I ACGT 2 cut(s) 81, 869
Hsp92II CATG 7 cut(s) 144, 248, 301, 344, 880, 892, 988
HspAI GCGC 1 cut(s) 907
KpnI GGTACC 1 cut(s) 257
Kzo9I GATC 6 cut(s) 66, 334, 461, 551, 568, 826
LmnI GCTCC 2 cut(s) 397, 745
Lsp1109I GCAGC 4 cut(s) 89, 246, 590, 939
LweI GCATC 4 cut(s) 310, 379, 683, 883
MabI ACCWGGT 1 cut(s) 810
MaeI CTAG 2 cut(s) 512, 549
MaeII ACGT 2 cut(s) 81, 869
MaeIII GTNAC 1 cut(s) 865
MalI GATC 6 cut(s) 68, 336, 463, 553, 570, 828
MboI GATC 6 cut(s) 66, 334, 461, 551, 568, 826
MboII GAAGA 4 cut(s) 214, 455, 758, 933
MfeI CAATTG 1 cut(s) 130
MflI RGATCY 1 cut(s) 461
MhlI GDGCHC 2 cut(s) 733, 750
MluCI AATT 3 cut(s) 130, 329, 718
MlyI GAGTC 2 cut(s) 14, 183
MmeI TCCRAC 1 cut(s) 157
Mph1103I ATGCAT 2 cut(s) 303, 898
MroXI GAANNNNTTC 1 cut(s) 122
MseI TTAA 5 cut(s) 327, 740, 872, 917, 1011
MslI CAYNNNNRTG 2 cut(s) 839, 891
MspA1I CMGCKG 1 cut(s) 259
MspI CCGG 2 cut(s) 48, 350
MspR9I CCNGG 1 cut(s) 812
MunI CAATTG 1 cut(s) 130
Mva1269I GAATGC 1 cut(s) 272
MvaI CCWGG 1 cut(s) 812
MvnI CGCG 1 cut(s) 59
MwoI GCNNNNNNNGC 2 cut(s) 779, 968
NdeI CATATG 1 cut(s) 382
NdeII GATC 6 cut(s) 66, 334, 461, 551, 568, 826
NlaIII CATG 7 cut(s) 144, 248, 301, 344, 880, 892, 988
NlaIV GGNNCC 5 cut(s) 216, 255, 319, 420, 806
NsbI TGCGCA 1 cut(s) 908
NsiI ATGCAT 2 cut(s) 303, 898
NspI RCATGY 2 cut(s) 301, 880
NspV TTCGAA 1 cut(s) 22
PaeI GCATGC 1 cut(s) 301
PciI ACATGT 1 cut(s) 876
PcsI WCGNNNNNNNCGW 1 cut(s) 87
PctI GAATGC 1 cut(s) 272
PdmI GAANNNNTTC 1 cut(s) 122
PfeI GAWTC 3 cut(s) 71, 136, 209
PflMI CCANNNNNTGG 3 cut(s) 146, 665, 814
PkrI GCNGC 5 cut(s) 101, 104, 261, 605, 954
PleI GAGTC 2 cut(s) 13, 182
PpsI GAGTC 2 cut(s) 13, 182
PpuMI RGGWCCY 1 cut(s) 418
PscI ACATGT 1 cut(s) 876
Psp1406I AACGTT 2 cut(s) 81, 869
Psp5II RGGWCCY 1 cut(s) 418
Psp6I CCWGG 1 cut(s) 810
PspGI CCWGG 1 cut(s) 810
PspN4I GGNNCC 5 cut(s) 216, 255, 319, 420, 806
PspPI GGNCC 3 cut(s) 418, 858, 943
PspPPI RGGWCCY 1 cut(s) 418
PsuI RGATCY 1 cut(s) 461
RsaI GTAC 2 cut(s) 255, 510
RsaNI GTAC 2 cut(s) 254, 509
RseI CAYNNNNRTG 2 cut(s) 839, 891
SaqAI TTAA 5 cut(s) 327, 740, 872, 917, 1011
SatI GCNGC 5 cut(s) 100, 103, 260, 604, 953
Sau3AI GATC 6 cut(s) 66, 334, 461, 551, 568, 826
Sau96I GGNCC 3 cut(s) 418, 858, 943
ScaI AGTACT 1 cut(s) 510
SchI GAGTC 2 cut(s) 14, 183
ScrFI CCNGG 1 cut(s) 812
SduI GDGCHC 2 cut(s) 733, 750
SexAI ACCWGGT 1 cut(s) 810
SfaNI GCATC 4 cut(s) 310, 379, 683, 883
SfcI CTRYAG 1 cut(s) 957
SfuI TTCGAA 1 cut(s) 22
SinI GGWCC 3 cut(s) 418, 858, 943
SmiMI CAYNNNNRTG 2 cut(s) 839, 891
SmlI CTYRAG 1 cut(s) 543
SmoI CTYRAG 1 cut(s) 543
SpeI ACTAGT 1 cut(s) 511
SphI GCATGC 1 cut(s) 301
Sse9I AATT 3 cut(s) 130, 329, 718
SsiI CCGC 5 cut(s) 87, 99, 150, 257, 856
SspMI CTAG 2 cut(s) 512, 549
StyD4I CCNGG 1 cut(s) 810
TaaI ACNGT 3 cut(s) 230, 374, 821
TaiI ACGT 2 cut(s) 84, 872
TaqI TCGA 3 cut(s) 22, 69, 156
TaqII GACCGA 1 cut(s) 960
TasI AATT 3 cut(s) 130, 329, 718
TatI WGTACW 1 cut(s) 508
TauI GCSGC 1 cut(s) 102
TfiI GAWTC 3 cut(s) 71, 136, 209
Tru1I TTAA 5 cut(s) 327, 740, 872, 917, 1011
Tru9I TTAA 5 cut(s) 327, 740, 872, 917, 1011
TscAI CASTG 1 cut(s) 826
TseI GCWGC 4 cut(s) 102, 259, 603, 952
TspDTI ATGAA 5 cut(s) 265, 348, 548, 778, 1001
TspRI CASTG 1 cut(s) 826
Van91I CCANNNNNTGG 3 cut(s) 146, 665, 814
VpaK11BI GGWCC 3 cut(s) 418, 858, 943
XceI RCATGY 2 cut(s) 301, 880
XmnI GAANNNNTTC 1 cut(s) 122
XspI CTAG 2 cut(s) 512, 549
ZrmI AGTACT 1 cut(s) 510
Zsp2I ATGCAT 2 cut(s) 303, 898
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.