Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001794

Physical Location & Seq

Genomic Coordinates Forward (+)

53024286 .. 53024879

Gene Structure 594 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ26011

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGCCAATATATGGGGAGGCATCAAATCATAGTTCTGTTCCTTTAGACAACCTTGACTTTTCAAATTATCCAAGAGCAGAATCTTCAATGGAGTACTCGCAGAAGGTTATTCTTCATGCAGGGGATGCACTATTTATTCCTGAAGGCTGGTTCCACCAGGTGGATAGTGATGATCTGACAATCGCTGTCAACTTTTGGTGGCAATCAAACATAATGTCAAGCATGTCAGAACACATGGATGCATATTATTTGCGCATACTATTAAGAAGGTACCTGTGGATGTGGTTAAGTGTCCTTTTTCATATGTCAGAAGAGCATTTCCAAAATAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000086 GO:0000278 GO:0003674 GO:0003682 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007049 GO:0008150 GO:0008152 GO:0008214 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016491 GO:0016569 GO:0016570 GO:0016577 GO:0016705 GO:0016706 GO:0019219 GO:0019222 GO:0019538 GO:0022402 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032451 GO:0032452 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044839 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051213 GO:0051252 GO:0051254 GO:0051276 GO:0051864 GO:0055114 GO:0060255 GO:0065007 GO:0070076 GO:0070544 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:1901564 GO:1902680 GO:1903047 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_8

Protein Analysis

110

Amino Acids

13.02

Weight (kDa)

4.78

Isoelectric Point (pI)

64.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_8	PF13621	7 - 70	9.1e-21	Cupin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001794)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26135 AT5G19840 AT5G19840
fragaria_vesca	FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940
malus_domestica	MD03G1258000.v1.1 MD03G1258100.v1.1 MD11G1278700.v1.1
prunus_persica	Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1
pyrus_communis	pycom03g20440 pycom11g24620 pycom11g24630
rosa_chinensis	RchiOBHm_Chr6g0289901 RchiOBHm_Chr6g0289911 RchiOBHm_Chr6g0289951
rosa_laevigata	RLG00000012257
rosa_multiflora	Rmu_sc0001312.1_g000002 Rmu_sc0023926.1_g000002
rosa_roxburghii	Rroxscaffold_7G00177480
rosa_rugosa	Rorug06G0208000
rosa_samantha	Rh6AG319300 Rh6BG326300 Rh6BG326400 Rh6CG332300 Rh6DG318000 Rh6DG318100
rosa_wichuraiana	Rw0G009780 Rw0G009800 Rw6G027540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	254
Acc65I	GGTACC	1 cut(s)	270
AccB1I	GGYRCC	1 cut(s)	270
AccB7I	CCANNNNNTGG	2 cut(s)	11, 160
AcuI	CTGAAG	1 cut(s)	162
AdeI	CACNNNGTG	1 cut(s)	160
AfaI	GTAC	2 cut(s)	95, 272
AfiI	CCNNNNNNNGG	2 cut(s)	11, 160
AgsI	TTSAA	2 cut(s)	63, 87
AjnI	CCWGG	1 cut(s)	156
ArsI	GACNNNNNNTTYG	2 cut(s)	200, 232
Asp718I	GGTACC	1 cut(s)	270
AspLEI	GCGC	1 cut(s)	255
BanI	GGYRCC	1 cut(s)	270
BciT130I	CCWGG	1 cut(s)	158
BmcAI	AGTACT	1 cut(s)	95
Bme1390I	CCNGG	1 cut(s)	158
BmiI	GGNNCC	2 cut(s)	152, 272
BmrFI	CCNGG	1 cut(s)	158
BmsI	GCATC	3 cut(s)	29, 115, 229
Bsc4I	CCNNNNNNNGG	2 cut(s)	11, 160
BseBI	CCWGG	1 cut(s)	158
BseGI	GGATG	3 cut(s)	130, 244, 285
BseLI	CCNNNNNNNGG	2 cut(s)	11, 160
BshNI	GGYRCC	1 cut(s)	270
BslI	CCNNNNNNNGG	2 cut(s)	11, 160
Bsp143I	GATC	1 cut(s)	172
BspLI	GGNNCC	2 cut(s)	152, 272
BspQI	GCTCTTC	1 cut(s)	306
BspT107I	GGYRCC	1 cut(s)	270
BssMI	GATC	1 cut(s)	172
Bst2UI	CCWGG	1 cut(s)	158
Bst6I	CTCTTC	1 cut(s)	306
BstAPI	GCANNNNNTGC	1 cut(s)	125
BstF5I	GGATG	3 cut(s)	130, 244, 285
BstHHI	GCGC	1 cut(s)	255
BstKTI	GATC	1 cut(s)	175
BstMBI	GATC	1 cut(s)	172
BstMWI	GCNNNNNNNGC	1 cut(s)	125
BstNI	CCWGG	1 cut(s)	158
BstNSI	RCATGY	1 cut(s)	226
BstSCI	CCNGG	1 cut(s)	156
BtsCI	GGATG	3 cut(s)	130, 244, 285
CfoI	GCGC	1 cut(s)	255
CsiI	ACCWGGT	1 cut(s)	156
Csp6I	GTAC	2 cut(s)	94, 271
CviAII	CATG	3 cut(s)	116, 223, 235
CviJI	RGCY	1 cut(s)	147
CviKI_1	RGCY	1 cut(s)	147
CviQI	GTAC	2 cut(s)	94, 271
DpnI	GATC	1 cut(s)	174
DpnII	GATC	1 cut(s)	172
DraIII	CACNNNGTG	1 cut(s)	160
Eam1104I	CTCTTC	1 cut(s)	306
EarI	CTCTTC	1 cut(s)	306
Eco57I	CTGAAG	1 cut(s)	162
EcoRII	CCWGG	1 cut(s)	156
EcoT22I	ATGCAT	1 cut(s)	244
FaeI	CATG	3 cut(s)	119, 226, 238
FatI	CATG	3 cut(s)	115, 222, 234
FauNDI	CATATG	1 cut(s)	303
FokI	GGATG	3 cut(s)	137, 251, 292
FspI	TGCGCA	1 cut(s)	254
GlaI	GCGC	1 cut(s)	254
HhaI	GCGC	1 cut(s)	255
Hin1II	CATG	3 cut(s)	119, 226, 238
Hin6I	GCGC	1 cut(s)	253
HinP1I	GCGC	1 cut(s)	253
HincII	GTYRAC	1 cut(s)	190
HindII	GTYRAC	1 cut(s)	190
HinfI	GANTC	1 cut(s)	80
Hpy166II	GTNNAC	1 cut(s)	190
Hpy188I	TCNGA	3 cut(s)	177, 229, 310
Hpy188III	TCNNGA	1 cut(s)	140
Hpy8I	GTNNAC	1 cut(s)	190
HpyAV	CCTTC	3 cut(s)	97, 137, 261
HpyCH4V	TGCA	3 cut(s)	119, 128, 242
HpyF10VI	GCNNNNNNNGC	1 cut(s)	125
Hsp92II	CATG	3 cut(s)	119, 226, 238
HspAI	GCGC	1 cut(s)	253
KpnI	GGTACC	1 cut(s)	274
Kzo9I	GATC	1 cut(s)	172
LguI	GCTCTTC	1 cut(s)	306
LpnPI	CCDG	6 cut(s)	105, 133, 143, 153, 170, 287
LweI	GCATC	3 cut(s)	29, 115, 229
MabI	ACCWGGT	1 cut(s)	156
MalI	GATC	1 cut(s)	174
MboI	GATC	1 cut(s)	172
MboII	GAAGA	3 cut(s)	75, 104, 323
MluCI	AATT	1 cut(s)	64
MnlI	CCTC	1 cut(s)	10
Mph1103I	ATGCAT	1 cut(s)	244
MseI	TTAA	2 cut(s)	263, 287
MslI	CAYNNNNRTG	1 cut(s)	237
MspR9I	CCNGG	1 cut(s)	158
MvaI	CCWGG	1 cut(s)	158
MwoI	GCNNNNNNNGC	1 cut(s)	125
NdeI	CATATG	1 cut(s)	303
NdeII	GATC	1 cut(s)	172
NlaIII	CATG	3 cut(s)	119, 226, 238
NlaIV	GGNNCC	2 cut(s)	152, 272
NsbI	TGCGCA	1 cut(s)	254
NsiI	ATGCAT	1 cut(s)	244
NspI	RCATGY	1 cut(s)	226
PciSI	GCTCTTC	1 cut(s)	306
PfeI	GAWTC	1 cut(s)	80
PflMI	CCANNNNNTGG	2 cut(s)	11, 160
Psp6I	CCWGG	1 cut(s)	156
PspGI	CCWGG	1 cut(s)	156
PspN4I	GGNNCC	2 cut(s)	152, 272
RsaI	GTAC	2 cut(s)	95, 272
RsaNI	GTAC	2 cut(s)	94, 271
RseI	CAYNNNNRTG	1 cut(s)	237
SapI	GCTCTTC	1 cut(s)	306
SaqAI	TTAA	2 cut(s)	263, 287
Sau3AI	GATC	1 cut(s)	172
ScaI	AGTACT	1 cut(s)	95
ScrFI	CCNGG	1 cut(s)	158
SetI	ASST	5 cut(s)	54, 108, 162, 272, 276
SexAI	ACCWGGT	1 cut(s)	156
SfaNI	GCATC	3 cut(s)	29, 115, 229
SmiMI	CAYNNNNRTG	1 cut(s)	237
Sse9I	AATT	1 cut(s)	64
StyD4I	CCNGG	1 cut(s)	156
TasI	AATT	1 cut(s)	64
TatI	WGTACW	1 cut(s)	93
TfiI	GAWTC	1 cut(s)	80
Tru1I	TTAA	2 cut(s)	263, 287
Tru9I	TTAA	2 cut(s)	263, 287
TspDTI	ATGAA	2 cut(s)	104, 290
Van91I	CCANNNNNTGG	2 cut(s)	11, 160
XceI	RCATGY	1 cut(s)	226
ZrmI	AGTACT	1 cut(s)	95
Zsp2I	ATGCAT	1 cut(s)	244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.