Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001794

Physical Location & Seq

Genomic Coordinates Forward (+)

52026827 .. 52027749

Gene Structure 923 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG318100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGCGTCATGGCAAAGTGGTGAGGCTGCTAATGCTGATGCTTAAAAGTTTTCCAAGAACTTTGGAGGCTTTAATACTGCACATGCTTACACCAGTGGGAGCAGAAGTGCTTACACGTAAATTTGAAGAAATGGATGACCTGAACACCAAGGAAGATCGGAACAGATTTTACCAAGTTTTCTATGAATCATTCAACGACCAATTTGCTGCAATGGATGCAATTCTGAATGGAAAGGAATTATTTGCCCTCCAGGCATACAAGAATGTGTTAGATAAGAACATAGGAGTAGATTGGGGTGGGCCAAAACCAGTTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000086 GO:0000278 GO:0003674 GO:0003682 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007049 GO:0008150 GO:0008152 GO:0008214 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016491 GO:0016569 GO:0016570 GO:0016577 GO:0016705 GO:0016706 GO:0019219 GO:0019222 GO:0019538 GO:0022402 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032451 GO:0032452 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044839 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051213 GO:0051252 GO:0051254 GO:0051276 GO:0051864 GO:0055114 GO:0060255 GO:0065007 GO:0070076 GO:0070544 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:1901564 GO:1902680 GO:1903047 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_8

Protein Analysis

105

Amino Acids

12.15

Weight (kDa)

6.73

Isoelectric Point (pI)

27.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001794)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26135 AT5G19840 AT5G19840
fragaria_vesca	FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940
malus_domestica	MD03G1258000.v1.1 MD03G1258100.v1.1 MD11G1278700.v1.1
prunus_persica	Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1
pyrus_communis	pycom03g20440 pycom11g24620 pycom11g24630
rosa_chinensis	RchiOBHm_Chr6g0289901 RchiOBHm_Chr6g0289911 RchiOBHm_Chr6g0289951
rosa_laevigata	RLG00000012257
rosa_multiflora	Rmu_sc0001312.1_g000002 Rmu_sc0023926.1_g000002
rosa_roxburghii	Rroxscaffold_7G00177480
rosa_rugosa	Rorug06G0208000
rosa_samantha	Rh6AG319300 Rh6BG326300 Rh6BG326400 Rh6CG332300 Rh6DG318000 Rh6DG318100
rosa_wichuraiana	Rw0G009780 Rw0G009800 Rw6G027540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	119
AflIII	ACRYGT	1 cut(s)	113
AgsI	TTSAA	2 cut(s)	125, 193
AjnI	CCWGG	1 cut(s)	249
AoxI	GGCC	1 cut(s)	299
ApeKI	GCWGC	2 cut(s)	25, 206
ApoI	RAATTY	1 cut(s)	119
AspS9I	GGNCC	1 cut(s)	299
AsuHPI	GGTGA	1 cut(s)	31
BbvI	GCAGC	2 cut(s)	12, 193
BcgI	CGANNNNNNTGC	2 cut(s)	185, 219
BciT130I	CCWGG	1 cut(s)	251
BglI	GCCNNNNNGGC	1 cut(s)	251
BisI	GCNGC	2 cut(s)	26, 207
BlsI	GCNGC	2 cut(s)	27, 208
Bme1390I	CCNGG	1 cut(s)	251
BmgT120I	GGNCC	1 cut(s)	299
BmrFI	CCNGG	1 cut(s)	251
BmsI	GCATC	2 cut(s)	27, 205
BpmI	CTGGAG	1 cut(s)	233
BsaAI	YACGTR	1 cut(s)	116
BsaJI	CCNNGG	1 cut(s)	147
BsaXI	ACNNNNNCTCC	2 cut(s)	90, 120
Bse1I	ACTGG	2 cut(s)	92, 308
Bse3DI	GCAATG	1 cut(s)	216
BseBI	CCWGG	1 cut(s)	251
BseDI	CCNNGG	1 cut(s)	147
BseGI	GGATG	2 cut(s)	139, 220
BseMI	GCAATG	1 cut(s)	216
BseNI	ACTGG	2 cut(s)	92, 308
BseXI	GCAGC	2 cut(s)	12, 193
BsgI	GTGCAG	1 cut(s)	62
BshFI	GGCC	1 cut(s)	301
BsnI	GGCC	1 cut(s)	301
Bsp143I	GATC	1 cut(s)	154
BspANI	GGCC	1 cut(s)	301
BsrDI	GCAATG	1 cut(s)	216
BsrI	ACTGG	2 cut(s)	92, 308
BssECI	CCNNGG	1 cut(s)	147
BssMI	GATC	1 cut(s)	154
BssT1I	CCWWGG	1 cut(s)	147
Bst2UI	CCWGG	1 cut(s)	251
BstAPI	GCANNNNNTGC	1 cut(s)	215
BstBAI	YACGTR	1 cut(s)	116
BstF5I	GGATG	2 cut(s)	139, 220
BstKTI	GATC	1 cut(s)	157
BstMBI	GATC	1 cut(s)	154
BstMWI	GCNNNNNNNGC	3 cut(s)	31, 215, 251
BstNI	CCWGG	1 cut(s)	251
BstNSI	RCATGY	1 cut(s)	85
BstSCI	CCNGG	1 cut(s)	249
BstV1I	GCAGC	2 cut(s)	12, 193
BsuRI	GGCC	1 cut(s)	301
BtsCI	GGATG	2 cut(s)	139, 220
BtsIMutI	CAGTG	1 cut(s)	99
Cfr13I	GGNCC	1 cut(s)	299
CviAII	CATG	2 cut(s)	8, 82
CviJI	RGCY	3 cut(s)	25, 68, 301
CviKI_1	RGCY	3 cut(s)	25, 68, 301
DpnI	GATC	1 cut(s)	156
DpnII	GATC	1 cut(s)	154
Eco130I	CCWWGG	1 cut(s)	147
EcoRII	CCWGG	1 cut(s)	249
EcoT14I	CCWWGG	1 cut(s)	147
ErhI	CCWWGG	1 cut(s)	147
FaeI	CATG	2 cut(s)	11, 85
FaiI	YATR	5 cut(s)	9, 83, 183, 256, 281
FatI	CATG	2 cut(s)	7, 81
Fnu4HI	GCNGC	2 cut(s)	26, 207
FokI	GGATG	2 cut(s)	146, 227
Fsp4HI	GCNGC	2 cut(s)	26, 207
GluI	GCNGC	2 cut(s)	26, 207
GsuI	CTGGAG	1 cut(s)	233
HaeIII	GGCC	1 cut(s)	301
Hin1II	CATG	2 cut(s)	11, 85
HinfI	GANTC	1 cut(s)	185
HphI	GGTGA	1 cut(s)	31
Hpy188I	TCNGA	2 cut(s)	159, 225
HpyCH4IV	ACGT	1 cut(s)	115
HpyCH4V	TGCA	3 cut(s)	79, 209, 218
HpyF10VI	GCNNNNNNNGC	3 cut(s)	31, 215, 251
HpySE526I	ACGT	1 cut(s)	115
Hsp92II	CATG	2 cut(s)	11, 85
Kzo9I	GATC	1 cut(s)	154
LmnI	GCTCC	1 cut(s)	98
LpnPI	CCDG	4 cut(s)	105, 152, 236, 263
Lsp1109I	GCAGC	2 cut(s)	12, 193
LweI	GCATC	2 cut(s)	27, 205
MaeII	ACGT	1 cut(s)	115
MalI	GATC	1 cut(s)	156
MboI	GATC	1 cut(s)	154
MboII	GAAGA	2 cut(s)	137, 164
MluCI	AATT	4 cut(s)	119, 200, 219, 236
MnlI	CCTC	3 cut(s)	15, 58, 257
MseI	TTAA	2 cut(s)	42, 71
MspR9I	CCNGG	1 cut(s)	251
MvaI	CCWGG	1 cut(s)	251
MwoI	GCNNNNNNNGC	3 cut(s)	31, 215, 251
NdeII	GATC	1 cut(s)	154
NlaIII	CATG	2 cut(s)	11, 85
NspI	RCATGY	1 cut(s)	85
PfeI	GAWTC	1 cut(s)	185
PkrI	GCNGC	2 cut(s)	27, 208
Ppu21I	YACGTR	1 cut(s)	116
Psp6I	CCWGG	1 cut(s)	249
PspGI	CCWGG	1 cut(s)	249
PspPI	GGNCC	1 cut(s)	299
PsrI	GAACNNNNNNTAC	2 cut(s)	152, 184
SaqAI	TTAA	2 cut(s)	42, 71
SatI	GCNGC	2 cut(s)	26, 207
Sau3AI	GATC	1 cut(s)	154
Sau96I	GGNCC	1 cut(s)	299
ScrFI	CCNGG	1 cut(s)	251
SetI	ASST	2 cut(s)	118, 141
SfaNI	GCATC	2 cut(s)	27, 205
Sse9I	AATT	4 cut(s)	119, 200, 219, 236
StyD4I	CCNGG	1 cut(s)	249
StyI	CCWWGG	1 cut(s)	147
TaiI	ACGT	1 cut(s)	118
TasI	AATT	4 cut(s)	119, 200, 219, 236
TfiI	GAWTC	1 cut(s)	185
Tru1I	TTAA	2 cut(s)	42, 71
Tru9I	TTAA	2 cut(s)	42, 71
TscAI	CASTG	1 cut(s)	99
TseI	GCWGC	2 cut(s)	25, 206
TspDTI	ATGAA	1 cut(s)	198
TspRI	CASTG	1 cut(s)	99
XapI	RAATTY	1 cut(s)	119
XceI	RCATGY	1 cut(s)	85

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.