Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0001794

Physical Location & Seq

Genomic Coordinates Forward (+)

34519110 .. 34522078

Gene Structure 2969 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1258100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGTCGCATGCACTGGAACCCCGTGCCGTCCTTGCTCTTCATGAACTTGTTTCTTTAGTTCATGGTCATGTTAATGCTGCTGAGCAAAGACAACCAGTGCAATCTGCTTCAACAACTGCTCCTGCAGCTAGTGTGAATGATGAACGCATCAAAGTCGTGAGACTGAGTTCGTTTGGCTTGGAAGATGATCCAGTTGCTAAAATTTTTTGGACTCTTCATTCCATCACTTTAAAAAATGTATTTCTTGCCATGGTGGAAAATTTCCCAAGAACTTTGGAGGCTTTAATACTGCACTTGCTTTCACCAGTGGGAGCTGAAGTACTTACTCGTAAATTTGATAGAATGGATCAACTGATCACTGAGGAAGAACGGGACAGATTTTACCAGGCTTTCTATGGGGCATTTGACGACCAATTCGCAGCAATGGATGCAATTTTGAAGGGGAAAGAATTATTTGCACTCCAGGCATACAAGAATGTATTGGATAAGTATTTGGGAGTGGATTGGAGGGGGCCAAAACCCGGGGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000086 GO:0000278 GO:0003674 GO:0003682 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007049 GO:0008150 GO:0008152 GO:0008214 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016491 GO:0016569 GO:0016570 GO:0016577 GO:0016705 GO:0016706 GO:0019219 GO:0019222 GO:0019538 GO:0022402 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032451 GO:0032452 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044839 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051213 GO:0051252 GO:0051254 GO:0051276 GO:0051864 GO:0055114 GO:0060255 GO:0065007 GO:0070076 GO:0070544 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:1901564 GO:1902680 GO:1903047 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_8

Protein Analysis

177

Amino Acids

19.76

Weight (kDa)

5.85

Isoelectric Point (pI)

32.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001794)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26135 AT5G19840 AT5G19840
fragaria_vesca	FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940
malus_domestica	MD03G1258000.v1.1 MD03G1258100.v1.1 MD11G1278700.v1.1
prunus_persica	Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1
pyrus_communis	pycom03g20440 pycom11g24620 pycom11g24630
rosa_chinensis	RchiOBHm_Chr6g0289901 RchiOBHm_Chr6g0289911 RchiOBHm_Chr6g0289951
rosa_laevigata	RLG00000012257
rosa_multiflora	Rmu_sc0001312.1_g000002 Rmu_sc0023926.1_g000002
rosa_roxburghii	Rroxscaffold_7G00177480
rosa_rugosa	Rorug06G0208000
rosa_samantha	Rh6AG319300 Rh6BG326300 Rh6BG326400 Rh6CG332300 Rh6DG318000 Rh6DG318100
rosa_wichuraiana	Rw0G009780 Rw0G009800 Rw6G027540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	182, 354
AcsI	RAATTY	3 cut(s)	201, 259, 332
AcuI	CTGAAG	1 cut(s)	336
AfaI	GTAC	1 cut(s)	321
AfiI	CCNNNNNNNGG	1 cut(s)	521
AgsI	TTSAA	2 cut(s)	111, 439
AjnI	CCWGG	2 cut(s)	384, 462
AluBI	AGCT	2 cut(s)	128, 314
AluI	AGCT	2 cut(s)	128, 314
Alw26I	GTCTC	1 cut(s)	154
AlwI	GGATC	2 cut(s)	182, 354
Ama87I	CYCGRG	1 cut(s)	521
AoxI	GGCC	1 cut(s)	512
ApeKI	GCWGC	3 cut(s)	77, 125, 419
ApoI	RAATTY	3 cut(s)	201, 259, 332
ArsI	GACNNNNNNTTYG	2 cut(s)	398, 430
AspS9I	GGNCC	1 cut(s)	512
AsuC2I	CCSGG	2 cut(s)	522, 523
AsuHPI	GGTGA	1 cut(s)	294
AvaI	CYCGRG	1 cut(s)	521
BbvI	GCAGC	3 cut(s)	64, 137, 431
BccI	CCATC	1 cut(s)	230
BceAI	ACGGC	1 cut(s)	11
BcgI	CGANNNNNNTGC	2 cut(s)	136, 170
BciT130I	CCWGG	2 cut(s)	386, 464
BclI	TGATCA	1 cut(s)	354
BcnI	CCSGG	2 cut(s)	522, 523
BcoDI	GTCTC	1 cut(s)	154
BfaI	CTAG	1 cut(s)	129
BfmI	CTRYAG	1 cut(s)	123
BisI	GCNGC	3 cut(s)	78, 126, 420
BlpI	GCTNAGC	1 cut(s)	81
BlsI	GCNGC	3 cut(s)	79, 127, 421
BmcAI	AGTACT	1 cut(s)	321
Bme1390I	CCNGG	4 cut(s)	386, 464, 522, 523
BmeT110I	CYCGRG	1 cut(s)	521
BmgT120I	GGNCC	1 cut(s)	512
BmiI	GGNNCC	2 cut(s)	18, 513
BmrFI	CCNGG	4 cut(s)	386, 464, 522, 523
BmsI	GCATC	2 cut(s)	156, 418
BpmI	CTGGAG	1 cut(s)	446
Bpu1102I	GCTNAGC	1 cut(s)	81
BpuMI	CCSGG	2 cut(s)	522, 523
BsaJI	CCNNGG	3 cut(s)	249, 521, 522
BsaXI	ACNNNNNCTCC	4 cut(s)	103, 133, 303, 333
Bsc4I	CCNNNNNNNGG	1 cut(s)	521
Bse1I	ACTGG	4 cut(s)	18, 95, 191, 305
Bse3DI	GCAATG	1 cut(s)	429
BseBI	CCWGG	2 cut(s)	386, 464
BseDI	CCNNGG	3 cut(s)	249, 521, 522
BseGI	GGATG	1 cut(s)	433
BseLI	CCNNNNNNNGG	1 cut(s)	521
BseMI	GCAATG	1 cut(s)	429
BseMII	CTCAG	3 cut(s)	72, 155, 351
BseNI	ACTGG	4 cut(s)	18, 95, 191, 305
BseXI	GCAGC	3 cut(s)	64, 137, 431
BsgI	GTGCAG	1 cut(s)	275
BshFI	GGCC	1 cut(s)	514
BsiHKCI	CYCGRG	1 cut(s)	521
BsiSI	CCGG	1 cut(s)	522
BslFI	GGGAC	1 cut(s)	386
BslI	CCNNNNNNNGG	1 cut(s)	521
BsmAI	GTCTC	1 cut(s)	154
BsmFI	GGGAC	1 cut(s)	386
BsnI	GGCC	1 cut(s)	514
BsoBI	CYCGRG	1 cut(s)	521
Bsp143I	GATC	3 cut(s)	187, 346, 354
Bsp1720I	GCTNAGC	1 cut(s)	81
Bsp19I	CCATGG	1 cut(s)	249
BspANI	GGCC	1 cut(s)	514
BspCNI	CTCAG	3 cut(s)	73, 156, 352
BspHI	TCATGA	1 cut(s)	40
BspLI	GGNNCC	2 cut(s)	18, 513
BspMAI	CTGCAG	1 cut(s)	127
BspPI	GGATC	2 cut(s)	182, 354
BspQI	GCTCTTC	1 cut(s)	42
BsrDI	GCAATG	1 cut(s)	429
BsrI	ACTGG	4 cut(s)	18, 95, 191, 305
BssECI	CCNNGG	3 cut(s)	249, 521, 522
BssMI	GATC	3 cut(s)	187, 346, 354
BssT1I	CCWWGG	1 cut(s)	249
Bst2UI	CCWGG	2 cut(s)	386, 464
Bst6I	CTCTTC	2 cut(s)	42, 219
BstAPI	GCANNNNNTGC	1 cut(s)	428
BstC8I	GCNNGC	1 cut(s)	9
BstDEI	CTNAG	3 cut(s)	81, 164, 360
BstDSI	CCRYGG	1 cut(s)	249
BstF5I	GGATG	1 cut(s)	433
BstKTI	GATC	3 cut(s)	190, 349, 357
BstMAI	GTCTC	1 cut(s)	154
BstMBI	GATC	3 cut(s)	187, 346, 354
BstMWI	GCNNNNNNNGC	4 cut(s)	32, 125, 428, 464
BstNI	CCWGG	2 cut(s)	386, 464
BstNSI	RCATGY	1 cut(s)	11
BstSCI	CCNGG	4 cut(s)	384, 462, 520, 521
BstSFI	CTRYAG	1 cut(s)	123
BstV1I	GCAGC	3 cut(s)	64, 137, 431
BsuRI	GGCC	1 cut(s)	514
BtgI	CCRYGG	1 cut(s)	249
BtsCI	GGATG	1 cut(s)	433
BtsIMutI	CAGTG	4 cut(s)	11, 102, 312, 357
Cac8I	GCNNGC	1 cut(s)	9
CciI	TCATGA	1 cut(s)	40
Cfr13I	GGNCC	1 cut(s)	512
Cfr9I	CCCGGG	1 cut(s)	521
Csp6I	GTAC	1 cut(s)	320
CviAII	CATG	5 cut(s)	8, 41, 62, 68, 250
CviJI	RGCY	6 cut(s)	128, 177, 281, 314, 389, 514
CviKI_1	RGCY	6 cut(s)	128, 177, 281, 314, 389, 514
CviQI	GTAC	1 cut(s)	320
DdeI	CTNAG	3 cut(s)	81, 164, 360
DpnI	GATC	3 cut(s)	189, 348, 356
DpnII	GATC	3 cut(s)	187, 346, 354
DraI	TTTAAA	1 cut(s)	231
Eam1104I	CTCTTC	2 cut(s)	42, 219
EarI	CTCTTC	2 cut(s)	42, 219
Eco130I	CCWWGG	1 cut(s)	249
Eco57I	CTGAAG	1 cut(s)	336
Eco88I	CYCGRG	1 cut(s)	521
EcoRII	CCWGG	2 cut(s)	384, 462
EcoT14I	CCWWGG	1 cut(s)	249
ErhI	CCWWGG	1 cut(s)	249
FaeI	CATG	5 cut(s)	11, 44, 65, 71, 253
FaiI	YATR	7 cut(s)	9, 42, 63, 69, 251, 396, 469
FaqI	GGGAC	1 cut(s)	386
FatI	CATG	5 cut(s)	7, 40, 61, 67, 249
FbaI	TGATCA	1 cut(s)	354
Fnu4HI	GCNGC	3 cut(s)	78, 126, 420
FokI	GGATG	1 cut(s)	440
Fsp4HI	GCNGC	3 cut(s)	78, 126, 420
FspBI	CTAG	1 cut(s)	129
GluI	GCNGC	3 cut(s)	78, 126, 420
GsuI	CTGGAG	1 cut(s)	446
HaeIII	GGCC	1 cut(s)	514
HapII	CCGG	1 cut(s)	522
Hin1II	CATG	5 cut(s)	11, 44, 65, 71, 253
HinfI	GANTC	1 cut(s)	211
HpaII	CCGG	1 cut(s)	522
HphI	GGTGA	1 cut(s)	294
Hpy188I	TCNGA	1 cut(s)	530
Hpy188III	TCNNGA	2 cut(s)	41, 157
HpyAV	CCTTC	1 cut(s)	433
HpyCH4V	TGCA	6 cut(s)	11, 100, 125, 292, 431, 458
HpyF10VI	GCNNNNNNNGC	4 cut(s)	32, 125, 428, 464
HpyF3I	CTNAG	3 cut(s)	81, 164, 360
Hsp92II	CATG	5 cut(s)	11, 44, 65, 71, 253
Ksp22I	TGATCA	1 cut(s)	354
Kzo9I	GATC	3 cut(s)	187, 346, 354
LguI	GCTCTTC	1 cut(s)	42
LmnI	GCTCC	2 cut(s)	124, 311
LpnPI	CCDG	8 cut(s)	108, 135, 204, 318, 371, 398, 449, 476
Lsp1109I	GCAGC	3 cut(s)	64, 137, 431
LweI	GCATC	2 cut(s)	156, 418
MaeI	CTAG	1 cut(s)	129
MalI	GATC	3 cut(s)	189, 348, 356
MboI	GATC	3 cut(s)	187, 346, 354
MboII	GAAGA	4 cut(s)	29, 194, 206, 377
MluCI	AATT	6 cut(s)	201, 259, 332, 413, 432, 449
MlyI	GAGTC	1 cut(s)	205
MnlI	CCTC	3 cut(s)	271, 355, 501
MseI	TTAA	3 cut(s)	72, 230, 284
MslI	CAYNNNNRTG	2 cut(s)	66, 72
MspI	CCGG	1 cut(s)	522
MspR9I	CCNGG	4 cut(s)	386, 464, 522, 523
MvaI	CCWGG	2 cut(s)	386, 464
MwoI	GCNNNNNNNGC	4 cut(s)	32, 125, 428, 464
NciI	CCSGG	2 cut(s)	522, 523
NcoI	CCATGG	1 cut(s)	249
NdeII	GATC	3 cut(s)	187, 346, 354
NlaIII	CATG	5 cut(s)	11, 44, 65, 71, 253
NlaIV	GGNNCC	2 cut(s)	18, 513
NspI	RCATGY	1 cut(s)	11
PaeI	GCATGC	1 cut(s)	11
PagI	TCATGA	1 cut(s)	40
PciSI	GCTCTTC	1 cut(s)	42
PkrI	GCNGC	3 cut(s)	79, 127, 421
PleI	GAGTC	1 cut(s)	205
PpsI	GAGTC	1 cut(s)	205
Psp6I	CCWGG	2 cut(s)	384, 462
PspGI	CCWGG	2 cut(s)	384, 462
PspN4I	GGNNCC	2 cut(s)	18, 513
PspPI	GGNCC	1 cut(s)	512
PstI	CTGCAG	1 cut(s)	127
RsaI	GTAC	1 cut(s)	321
RsaNI	GTAC	1 cut(s)	320
RseI	CAYNNNNRTG	2 cut(s)	66, 72
SapI	GCTCTTC	1 cut(s)	42
SaqAI	TTAA	3 cut(s)	72, 230, 284
SatI	GCNGC	3 cut(s)	78, 126, 420
Sau3AI	GATC	3 cut(s)	187, 346, 354
Sau96I	GGNCC	1 cut(s)	512
ScaI	AGTACT	1 cut(s)	321
SchI	GAGTC	1 cut(s)	205
ScrFI	CCNGG	4 cut(s)	386, 464, 522, 523
SetI	ASST	2 cut(s)	130, 316
SfaNI	GCATC	2 cut(s)	156, 418
SfcI	CTRYAG	1 cut(s)	123
SmaI	CCCGGG	1 cut(s)	523
SmiMI	CAYNNNNRTG	2 cut(s)	66, 72
SphI	GCATGC	1 cut(s)	11
Sse9I	AATT	6 cut(s)	201, 259, 332, 413, 432, 449
SspMI	CTAG	1 cut(s)	129
StyD4I	CCNGG	4 cut(s)	384, 462, 520, 521
StyI	CCWWGG	1 cut(s)	249
TasI	AATT	6 cut(s)	201, 259, 332, 413, 432, 449
TatI	WGTACW	1 cut(s)	319
Tru1I	TTAA	3 cut(s)	72, 230, 284
Tru9I	TTAA	3 cut(s)	72, 230, 284
TscAI	CASTG	4 cut(s)	18, 102, 312, 364
TseI	GCWGC	3 cut(s)	77, 125, 419
TspDTI	ATGAA	5 cut(s)	29, 50, 57, 156, 206
TspMI	CCCGGG	1 cut(s)	521
TspRI	CASTG	4 cut(s)	18, 102, 312, 364
XapI	RAATTY	3 cut(s)	201, 259, 332
XceI	RCATGY	1 cut(s)	11
XcmI	CCANNNNNNNNNTGG	1 cut(s)	392
XmaI	CCCGGG	1 cut(s)	521
XspI	CTAG	1 cut(s)	129
ZrmI	AGTACT	1 cut(s)	321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.