Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001794

Physical Location & Seq

Genomic Coordinates Forward (+)

52989411 .. 52990719

Gene Structure 1309 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ26006

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGAGGAGTCTCTGCGAATTCGAAGATTGGAGGAAGTTCCTCCGGCCAAAGACTTCACCACTCGGATTGAATCCAGGAATATTCCGGCGGTTATCAAGGGCTGCGTTAAAGATTGGGGAGCTGTTTCCAAGTGGAATCCATCGAATGGCGGCCTGGAATATTTGCAGGAACGAGTCGGATTGTGTGTTGTGGAGGCTATGCTATCTAGTTTCGCACCTGTCTTCTACGGCGATCTTAGAAGTCATGAGAGGGTACCACTGCCATTTTCTGCCTTCATTCGTCTATGTAGACTACGCATGCATCATGCAGAGGATGGTTCTGGTGCTTATTCTGAATCGGAACGGACTGGGCTGCTAGGGCCTGAATCTGAGCATGACTGTACCGATAATCAGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000086 GO:0000278 GO:0003674 GO:0003682 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007049 GO:0008150 GO:0008152 GO:0008214 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016491 GO:0016569 GO:0016570 GO:0016577 GO:0016705 GO:0016706 GO:0019219 GO:0019222 GO:0019538 GO:0022402 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032451 GO:0032452 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044839 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051213 GO:0051252 GO:0051254 GO:0051276 GO:0051864 GO:0055114 GO:0060255 GO:0065007 GO:0070076 GO:0070544 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:1901564 GO:1902680 GO:1903047 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_8

Protein Analysis

132

Amino Acids

14.91

Weight (kDa)

5.57

Isoelectric Point (pI)

69.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_8	PF13621	18 - 70	6.1e-07	Cupin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001794)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26135 AT5G19840 AT5G19840
fragaria_vesca	FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940
malus_domestica	MD03G1258000.v1.1 MD03G1258100.v1.1 MD11G1278700.v1.1
prunus_persica	Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1
pyrus_communis	pycom03g20440 pycom11g24620 pycom11g24630
rosa_chinensis	RchiOBHm_Chr6g0289901 RchiOBHm_Chr6g0289911 RchiOBHm_Chr6g0289951
rosa_laevigata	RLG00000012257
rosa_multiflora	Rmu_sc0001312.1_g000002 Rmu_sc0023926.1_g000002
rosa_roxburghii	Rroxscaffold_7G00177480
rosa_rugosa	Rorug06G0208000
rosa_samantha	Rh6AG319300 Rh6BG326300 Rh6BG326400 Rh6CG332300 Rh6DG318000 Rh6DG318100
rosa_wichuraiana	Rw0G009780 Rw0G009800 Rw6G027540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	253
AccB1I	GGYRCC	1 cut(s)	253
AccB7I	CCANNNNNTGG	1 cut(s)	146
AccI	GTMKAC	1 cut(s)	289
AciI	CCGC	2 cut(s)	89, 150
AcoI	YGGCCR	1 cut(s)	45
AcsI	RAATTY	1 cut(s)	18
AfaI	GTAC	3 cut(s)	255, 382, 395
AfiI	CCNNNNNNNGG	1 cut(s)	146
AgsI	TTSAA	1 cut(s)	71
AjnI	CCWGG	2 cut(s)	74, 153
AluBI	AGCT	1 cut(s)	122
AluI	AGCT	1 cut(s)	122
Alw26I	GTCTC	1 cut(s)	15
AoxI	GGCC	3 cut(s)	45, 151, 359
ApeKI	GCWGC	2 cut(s)	102, 352
ApoI	RAATTY	1 cut(s)	18
Asp718I	GGTACC	1 cut(s)	253
AspS9I	GGNCC	1 cut(s)	359
AsuHPI	GGTGA	1 cut(s)	49
AsuII	TTCGAA	1 cut(s)	22
BanI	GGYRCC	1 cut(s)	253
BbsI	GAAGAC	1 cut(s)	214
BbvI	GCAGC	2 cut(s)	89, 339
BccI	CCATC	2 cut(s)	148, 308
BceAI	ACGGC	1 cut(s)	244
BciT130I	CCWGG	2 cut(s)	76, 155
BcoDI	GTCTC	1 cut(s)	15
BfaI	CTAG	2 cut(s)	207, 356
BisI	GCNGC	3 cut(s)	103, 151, 353
BlsI	GCNGC	3 cut(s)	104, 152, 354
BmcAI	AGTACT	1 cut(s)	395
Bme1390I	CCNGG	2 cut(s)	76, 155
BmgT120I	GGNCC	1 cut(s)	359
BmiI	GGNNCC	1 cut(s)	255
BmrFI	CCNGG	2 cut(s)	76, 155
BmrI	ACTGGG	1 cut(s)	357
BmsI	GCATC	1 cut(s)	310
BmuI	ACTGGG	1 cut(s)	357
BpiI	GAAGAC	1 cut(s)	214
Bpu14I	TTCGAA	1 cut(s)	22
Bsc4I	CCNNNNNNNGG	1 cut(s)	146
Bse1I	ACTGG	1 cut(s)	352
BseBI	CCWGG	2 cut(s)	76, 155
BseGI	GGATG	1 cut(s)	319
BseLI	CCNNNNNNNGG	1 cut(s)	146
BseMII	CTCAG	1 cut(s)	360
BseNI	ACTGG	1 cut(s)	352
BseRI	GAGGAG	1 cut(s)	20
BseXI	GCAGC	2 cut(s)	89, 339
BshFI	GGCC	3 cut(s)	47, 153, 361
BshNI	GGYRCC	1 cut(s)	253
BsiSI	CCGG	2 cut(s)	44, 86
BslI	CCNNNNNNNGG	1 cut(s)	146
BsmAI	GTCTC	1 cut(s)	15
BsnI	GGCC	3 cut(s)	47, 153, 361
Bsp119I	TTCGAA	1 cut(s)	22
Bsp143I	GATC	1 cut(s)	232
BspACI	CCGC	2 cut(s)	89, 150
BspANI	GGCC	3 cut(s)	47, 153, 361
BspCNI	CTCAG	1 cut(s)	361
BspHI	TCATGA	1 cut(s)	244
BspLI	GGNNCC	1 cut(s)	255
BspT104I	TTCGAA	1 cut(s)	22
BspT107I	GGYRCC	1 cut(s)	253
BsrI	ACTGG	1 cut(s)	352
BssMI	GATC	1 cut(s)	232
Bst2UI	CCWGG	2 cut(s)	76, 155
Bst4CI	ACNGT	1 cut(s)	380
BstBI	TTCGAA	1 cut(s)	22
BstC8I	GCNNGC	1 cut(s)	299
BstDEI	CTNAG	2 cut(s)	236, 369
BstF5I	GGATG	1 cut(s)	319
BstKTI	GATC	1 cut(s)	235
BstMAI	GTCTC	1 cut(s)	15
BstMBI	GATC	1 cut(s)	232
BstMWI	GCNNNNNNNGC	1 cut(s)	358
BstNI	CCWGG	2 cut(s)	76, 155
BstNSI	RCATGY	1 cut(s)	301
BstSCI	CCNGG	2 cut(s)	74, 153
BstV1I	GCAGC	2 cut(s)	89, 339
BstV2I	GAAGAC	1 cut(s)	214
BsuRI	GGCC	3 cut(s)	47, 153, 361
BtsCI	GGATG	1 cut(s)	319
BtsI	GCAGTG	1 cut(s)	257
BtsIMutI	CAGTG	1 cut(s)	257
Cac8I	GCNNGC	1 cut(s)	299
CciI	TCATGA	1 cut(s)	244
Cfr13I	GGNCC	1 cut(s)	359
Csp6I	GTAC	3 cut(s)	254, 381, 394
CspCI	CAANNNNNGTGG	2 cut(s)	49, 84
CviAII	CATG	4 cut(s)	245, 298, 305, 374
CviJI	RGCY	7 cut(s)	47, 102, 122, 153, 197, 352, 361
CviKI_1	RGCY	7 cut(s)	47, 102, 122, 153, 197, 352, 361
CviQI	GTAC	3 cut(s)	254, 381, 394
DdeI	CTNAG	2 cut(s)	236, 369
DpnI	GATC	1 cut(s)	234
DpnII	GATC	1 cut(s)	232
EaeI	YGGCCR	1 cut(s)	45
EcoO109I	RGGNCCY	1 cut(s)	359
EcoRI	GAATTC	1 cut(s)	18
EcoRII	CCWGG	2 cut(s)	74, 153
EcoT22I	ATGCAT	1 cut(s)	303
FaeI	CATG	4 cut(s)	248, 301, 308, 377
FaiI	YATR	6 cut(s)	200, 246, 286, 299, 306, 375
FatI	CATG	4 cut(s)	244, 297, 304, 373
FblI	GTMKAC	1 cut(s)	289
Fnu4HI	GCNGC	3 cut(s)	103, 151, 353
FokI	GGATG	1 cut(s)	326
Fsp4HI	GCNGC	3 cut(s)	103, 151, 353
FspBI	CTAG	2 cut(s)	207, 356
GluI	GCNGC	3 cut(s)	103, 151, 353
HaeIII	GGCC	3 cut(s)	47, 153, 361
HapII	CCGG	2 cut(s)	44, 86
Hin1II	CATG	4 cut(s)	248, 301, 308, 377
HinfI	GANTC	6 cut(s)	8, 71, 136, 174, 335, 365
HpaII	CCGG	2 cut(s)	44, 86
HphI	GGTGA	1 cut(s)	49
Hpy166II	GTNNAC	1 cut(s)	290
Hpy188I	TCNGA	5 cut(s)	66, 179, 334, 340, 370
Hpy188III	TCNNGA	1 cut(s)	245
Hpy8I	GTNNAC	1 cut(s)	290
HpyAV	CCTTC	1 cut(s)	283
HpyCH4III	ACNGT	1 cut(s)	380
HpyCH4V	TGCA	3 cut(s)	166, 301, 308
HpyF10VI	GCNNNNNNNGC	1 cut(s)	358
HpyF3I	CTNAG	2 cut(s)	236, 369
Hsp92II	CATG	4 cut(s)	248, 301, 308, 377
KpnI	GGTACC	1 cut(s)	257
Kzo9I	GATC	1 cut(s)	232
LmnI	GCTCC	1 cut(s)	119
Lsp1109I	GCAGC	2 cut(s)	89, 339
LweI	GCATC	1 cut(s)	310
MaeI	CTAG	2 cut(s)	207, 356
MalI	GATC	1 cut(s)	234
MboI	GATC	1 cut(s)	232
MboII	GAAGA	2 cut(s)	36, 214
MluCI	AATT	1 cut(s)	18
MlyI	GAGTC	2 cut(s)	17, 183
MmeI	TCCRAC	1 cut(s)	157
MnlI	CCTC	5 cut(s)	25, 51, 187, 243, 304
Mph1103I	ATGCAT	1 cut(s)	303
MseI	TTAA	1 cut(s)	108
MspI	CCGG	2 cut(s)	44, 86
MspR9I	CCNGG	2 cut(s)	76, 155
MvaI	CCWGG	2 cut(s)	76, 155
MwoI	GCNNNNNNNGC	1 cut(s)	358
NdeII	GATC	1 cut(s)	232
NlaIII	CATG	4 cut(s)	248, 301, 308, 377
NlaIV	GGNNCC	1 cut(s)	255
NsiI	ATGCAT	1 cut(s)	303
NspI	RCATGY	1 cut(s)	301
NspV	TTCGAA	1 cut(s)	22
PaeI	GCATGC	1 cut(s)	301
PagI	TCATGA	1 cut(s)	244
PfeI	GAWTC	4 cut(s)	71, 136, 335, 365
PflMI	CCANNNNNTGG	1 cut(s)	146
PfoI	TCCNGGA	1 cut(s)	74
PkrI	GCNGC	3 cut(s)	104, 152, 354
PleI	GAGTC	2 cut(s)	16, 182
PpsI	GAGTC	2 cut(s)	16, 182
Psp6I	CCWGG	2 cut(s)	74, 153
PspGI	CCWGG	2 cut(s)	74, 153
PspN4I	GGNNCC	1 cut(s)	255
PspPI	GGNCC	1 cut(s)	359
RsaI	GTAC	3 cut(s)	255, 382, 395
RsaNI	GTAC	3 cut(s)	254, 381, 394
SaqAI	TTAA	1 cut(s)	108
SatI	GCNGC	3 cut(s)	103, 151, 353
Sau3AI	GATC	1 cut(s)	232
Sau96I	GGNCC	1 cut(s)	359
ScaI	AGTACT	1 cut(s)	395
SchI	GAGTC	2 cut(s)	17, 183
ScrFI	CCNGG	2 cut(s)	76, 155
SetI	ASST	2 cut(s)	124, 220
SfaNI	GCATC	1 cut(s)	310
SfuI	TTCGAA	1 cut(s)	22
SphI	GCATGC	1 cut(s)	301
Sse9I	AATT	1 cut(s)	18
SsiI	CCGC	2 cut(s)	89, 150
SspI	AATATT	2 cut(s)	82, 161
SspMI	CTAG	2 cut(s)	207, 356
StyD4I	CCNGG	2 cut(s)	74, 153
TaaI	ACNGT	1 cut(s)	380
TaqI	TCGA	2 cut(s)	22, 143
TasI	AATT	1 cut(s)	18
TatI	WGTACW	1 cut(s)	393
TauI	GCSGC	1 cut(s)	153
TfiI	GAWTC	4 cut(s)	71, 136, 335, 365
Tru1I	TTAA	1 cut(s)	108
Tru9I	TTAA	1 cut(s)	108
TscAI	CASTG	1 cut(s)	264
TseI	GCWGC	2 cut(s)	102, 352
TspDTI	ATGAA	1 cut(s)	265
TspGWI	ACGGA	1 cut(s)	358
TspRI	CASTG	1 cut(s)	264
Van91I	CCANNNNNTGG	1 cut(s)	146
XapI	RAATTY	1 cut(s)	18
XceI	RCATGY	1 cut(s)	301
XmiI	GTMKAC	1 cut(s)	289
XspI	CTAG	2 cut(s)	207, 356
ZrmI	AGTACT	1 cut(s)	395
Zsp2I	ATGCAT	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.