RLG00000012257

Cupin-like domain

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Reverse (-)
16812691 .. 16817943
5253 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012257

Sequence Viewer

Length: 1329 bp
ATGGAGGAGTCTCTGCGAATTCGAAGATTGGAGGAAGTTCCTCCGGCCAAAGACTTCACCGCTCGGATTGAATCCAGGAATATTCCGGCGGTTATCAAGGGCTGCGTTAAAGATTGGGAAGCTGTTTCCAAGTGGAATCCATCGAATGGCGGCCTGGAATATTTGCAGGAACGAGTCGGATTGTGTGTTGTGGAGGCTATGCTATCTAGTTTCGCACCTGTCTTCTACGGTGATCTTAGAAGTCATGAGAGGGTACCACTGCCATTTTCTGCCTTTATTCGTCTATGTAGACTACGCATGCATCATGCAGAGGATGGGTCTGGTGCTTATTCTGAATCGGAACGGACTGGGCTGCTAGGGCCTGAATCTGAGCATGACTGTAAGCCCTACGAGGATGCTCCTCAACAAATCTATTTAGCACAGGTACCGATAATCAGTACTGAAAATGAAGAGAGGGTTCAGTTGGAAACTTTGAGGGAAGATATTCAAATGCCTGCATTTTTGGAGGATAAATCACTAATTTCTGTCAACCTCTGGATGAACAATGCTCAAGCTAGATCAAGCACTCACTATGATCCACACCATAACCTTCTCTGCATAGTTTCTGGCTGTAAACAAGTGGTTTTATGGCCTCCTTCAGCAACTCCGGTGTTATACCCTATGCCAATATATGGGGAGGCATCAAATCATAGTTCTGTTCCTTTAGACAACCTTGACTTTTCAAATTATCCAAGAGCAGAATCTTCAATGGAGTACTCGCAGAAGGTTATTCTTCATGCAGGGGATGCACTATTTATTCCTGAAGGCTGGTTCCACCAGGTGGATAGTGATGATCTGACAATCGCTGTCAACTTTTGGTGGCAATCAAACATAATGTCATGCTTGTCAGAACACATGGATGCATATTATTTGCGCGTACTATTAAGAAGTGTCAAGGACAAGGGTAGCAAAGTTGTGAGAGTGCATGCATTTAGGTTGGAAGATGACCCAGTCGCTAACATTATTTGGACTCTTCCGCCATGCACTCTTCAACGCGTACTTCTTGCCATGGTGAAAAGTTTCCCAAGAACTTTGGAGGCTTTAATACTGCACATGCTTACACCAGTGGGAGCAGAAGTGCTTACACGTAAATTTGAAGAAATGGATGACCTGAACACCAAGGAAGATCGGAAGAGATTCTACCAAGTTTTCTATGAATCATTCAACGACCAATTTGTTGCAATGGATGCAATTCTGAATGGAAAGGAATTATTTGCCCTCCAGGCATACAAGAATGTGTTAGATAAGAACATAGGAGTAGATTGGGGTGGGCCAAAACCAGTTGTGTGA

Protein Analysis

443

Amino Acids

50.41

Weight (kDa)

5.27

Isoelectric Point (pI)

57.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_8 PF13621 18 - 290 7.6e-53 Cupin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 253, 424
AccB1I GGYRCC 2 cut(s) 253, 424
AccB7I CCANNNNNTGG 3 cut(s) 146, 671, 820
AccBSI CCGCTC 1 cut(s) 62
AccI GTMKAC 1 cut(s) 289
AccII CGCG 2 cut(s) 915, 1035
AciI CCGC 4 cut(s) 60, 89, 150, 1016
AclWI GGATC 1 cut(s) 569
AcoI YGGCCR 1 cut(s) 45
AcsI RAATTY 2 cut(s) 18, 1130
AcuI CTGAAG 2 cut(s) 621, 822
AdeI CACNNNGTG 1 cut(s) 820
AfaI GTAC 6 cut(s) 255, 426, 439, 755, 918, 1038
AfiI CCNNNNNNNGG 3 cut(s) 146, 671, 820
AflIII ACRYGT 2 cut(s) 1033, 1124
AgsI TTSAA 7 cut(s) 71, 488, 723, 747, 1031, 1136, 1204
AjnI CCWGG 4 cut(s) 74, 153, 816, 1260
AluBI AGCT 2 cut(s) 122, 554
AluI AGCT 2 cut(s) 122, 554
Alw26I GTCTC 1 cut(s) 15
AlwI GGATC 1 cut(s) 569
AoxI GGCC 5 cut(s) 45, 151, 359, 629, 1310
ApeKI GCWGC 2 cut(s) 102, 352
ApoI RAATTY 2 cut(s) 18, 1130
ArsI GACNNNNNNTTYG 2 cut(s) 860, 892
Asp700I GAANNNNTTC 3 cut(s) 483, 1058, 1175
Asp718I GGTACC 2 cut(s) 253, 424
AspLEI GCGC 1 cut(s) 915
AspS9I GGNCC 2 cut(s) 359, 1310
AsuHPI GGTGA 3 cut(s) 49, 242, 1063
AsuII TTCGAA 1 cut(s) 22
BanI GGYRCC 2 cut(s) 253, 424
BarI GAAGNNNNNNTAC 2 cut(s) 1163, 1195
BbsI GAAGAC 1 cut(s) 214
BbvI GCAGC 2 cut(s) 89, 339
BccI CCATC 2 cut(s) 148, 308
BciT130I CCWGG 4 cut(s) 76, 155, 818, 1262
BcoDI GTCTC 1 cut(s) 15
BfaI CTAG 3 cut(s) 207, 356, 555
BglI GCCNNNNNGGC 1 cut(s) 1262
BisI GCNGC 3 cut(s) 103, 151, 353
BlsI GCNGC 3 cut(s) 104, 152, 354
BmcAI AGTACT 2 cut(s) 439, 755
Bme1390I CCNGG 4 cut(s) 76, 155, 818, 1262
BmgT120I GGNCC 2 cut(s) 359, 1310
BmiI GGNNCC 3 cut(s) 255, 426, 812
BmrFI CCNGG 4 cut(s) 76, 155, 818, 1262
BmrI ACTGGG 2 cut(s) 357, 983
BmsI GCATC 6 cut(s) 310, 385, 689, 775, 889, 1216
BmuI ACTGGG 2 cut(s) 357, 983
BpiI GAAGAC 1 cut(s) 214
BpmI CTGGAG 1 cut(s) 1244
Bpu14I TTCGAA 1 cut(s) 22
BpuEI CTTGAG 1 cut(s) 534
BsaAI YACGTR 1 cut(s) 1127
BsaJI CCNNGG 2 cut(s) 1047, 1158
BsaWI WCCGGW 1 cut(s) 646
BsaXI ACNNNNNCTCC 2 cut(s) 1101, 1131
Bsc4I CCNNNNNNNGG 3 cut(s) 146, 671, 820
Bse1I ACTGG 4 cut(s) 352, 989, 1103, 1319
Bse3DI GCAATG 1 cut(s) 1227
BseBI CCWGG 4 cut(s) 76, 155, 818, 1262
BseDI CCNNGG 2 cut(s) 1047, 1158
BseGI GGATG 7 cut(s) 319, 400, 543, 790, 904, 1150, 1231
BseLI CCNNNNNNNGG 3 cut(s) 146, 671, 820
BseMI GCAATG 1 cut(s) 1227
BseMII CTCAG 1 cut(s) 360
BseNI ACTGG 4 cut(s) 352, 989, 1103, 1319
BseRI GAGGAG 2 cut(s) 20, 390
BseXI GCAGC 2 cut(s) 89, 339
BsgI GTGCAG 1 cut(s) 1073
Bsh1236I CGCG 2 cut(s) 915, 1035
BshFI GGCC 5 cut(s) 47, 153, 361, 631, 1312
BshNI GGYRCC 2 cut(s) 253, 424
BsiSI CCGG 3 cut(s) 44, 86, 647
BslI CCNNNNNNNGG 3 cut(s) 146, 671, 820
BsmAI GTCTC 1 cut(s) 15
BsnI GGCC 5 cut(s) 47, 153, 361, 631, 1312
Bsp119I TTCGAA 1 cut(s) 22
Bsp143I GATC 5 cut(s) 232, 557, 574, 832, 1165
Bsp19I CCATGG 1 cut(s) 1047
BspACI CCGC 4 cut(s) 60, 89, 150, 1016
BspANI GGCC 5 cut(s) 47, 153, 361, 631, 1312
BspCNI CTCAG 1 cut(s) 361
BspFNI CGCG 2 cut(s) 915, 1035
BspHI TCATGA 1 cut(s) 244
BspLI GGNNCC 3 cut(s) 255, 426, 812
BspPI GGATC 1 cut(s) 569
BspT104I TTCGAA 1 cut(s) 22
BspT107I GGYRCC 2 cut(s) 253, 424
BsrBI CCGCTC 1 cut(s) 62
BsrDI GCAATG 1 cut(s) 1227
BsrI ACTGG 4 cut(s) 352, 989, 1103, 1319
BssECI CCNNGG 2 cut(s) 1047, 1158
BssMI GATC 5 cut(s) 232, 557, 574, 832, 1165
BssT1I CCWWGG 2 cut(s) 1047, 1158
Bst2UI CCWGG 4 cut(s) 76, 155, 818, 1262
Bst4CI ACNGT 2 cut(s) 230, 380
Bst6I CTCTTC 4 cut(s) 444, 1017, 1032, 1166
BstAPI GCANNNNNTGC 2 cut(s) 785, 1226
BstBAI YACGTR 1 cut(s) 1127
BstBI TTCGAA 1 cut(s) 22
BstC8I GCNNGC 3 cut(s) 299, 495, 966
BstDEI CTNAG 2 cut(s) 236, 369
BstDSI CCRYGG 1 cut(s) 1047
BstF5I GGATG 7 cut(s) 319, 400, 543, 790, 904, 1150, 1231
BstFNI CGCG 2 cut(s) 915, 1035
BstHHI GCGC 1 cut(s) 915
BstKTI GATC 5 cut(s) 235, 560, 577, 835, 1168
BstMAI GTCTC 1 cut(s) 15
BstMBI GATC 5 cut(s) 232, 557, 574, 832, 1165
BstMWI GCNNNNNNNGC 4 cut(s) 358, 785, 1226, 1262
BstNI CCWGG 4 cut(s) 76, 155, 818, 1262
BstNSI RCATGY 3 cut(s) 301, 968, 1096
BstSCI CCNGG 4 cut(s) 74, 153, 816, 1260
BstUI CGCG 2 cut(s) 915, 1035
BstV1I GCAGC 2 cut(s) 89, 339
BstV2I GAAGAC 1 cut(s) 214
BsuRI GGCC 5 cut(s) 47, 153, 361, 631, 1312
BtgI CCRYGG 1 cut(s) 1047
BtsCI GGATG 7 cut(s) 319, 400, 543, 790, 904, 1150, 1231
BtsI GCAGTG 1 cut(s) 257
BtsIMutI CAGTG 2 cut(s) 257, 1110
Cac8I GCNNGC 3 cut(s) 299, 495, 966
CciI TCATGA 1 cut(s) 244
CfoI GCGC 1 cut(s) 915
Cfr13I GGNCC 2 cut(s) 359, 1310
CsiI ACCWGGT 1 cut(s) 816
Csp6I GTAC 6 cut(s) 254, 425, 438, 754, 917, 1037
CviQI GTAC 6 cut(s) 254, 425, 438, 754, 917, 1037
DdeI CTNAG 2 cut(s) 236, 369
DpnI GATC 5 cut(s) 234, 559, 576, 834, 1167
DpnII GATC 5 cut(s) 232, 557, 574, 832, 1165
DraIII CACNNNGTG 1 cut(s) 820
EaeI YGGCCR 1 cut(s) 45
Eam1104I CTCTTC 4 cut(s) 444, 1017, 1032, 1166
EarI CTCTTC 4 cut(s) 444, 1017, 1032, 1166
EciI GGCGGA 1 cut(s) 1005
Eco130I CCWWGG 2 cut(s) 1047, 1158
Eco57I CTGAAG 2 cut(s) 621, 822
EcoO109I RGGNCCY 1 cut(s) 359
EcoRI GAATTC 1 cut(s) 18
EcoRII CCWGG 4 cut(s) 74, 153, 816, 1260
EcoT14I CCWWGG 2 cut(s) 1047, 1158
EcoT22I ATGCAT 3 cut(s) 303, 904, 970
ErhI CCWWGG 2 cut(s) 1047, 1158
FblI GTMKAC 1 cut(s) 289
Fnu4HI GCNGC 3 cut(s) 103, 151, 353
FokI GGATG 7 cut(s) 326, 407, 550, 797, 911, 1157, 1238
Fsp4HI GCNGC 3 cut(s) 103, 151, 353
FspBI CTAG 3 cut(s) 207, 356, 555
GlaI GCGC 1 cut(s) 914
GluI GCNGC 3 cut(s) 103, 151, 353
GsuI CTGGAG 1 cut(s) 1244
HaeIII GGCC 5 cut(s) 47, 153, 361, 631, 1312
HapII CCGG 3 cut(s) 44, 86, 647
HhaI GCGC 1 cut(s) 915
Hin6I GCGC 1 cut(s) 913
HinP1I GCGC 1 cut(s) 913
HincII GTYRAC 2 cut(s) 529, 850
HindII GTYRAC 2 cut(s) 529, 850
HpaII CCGG 3 cut(s) 44, 86, 647
HphI GGTGA 3 cut(s) 49, 242, 1063
Hpy166II GTNNAC 4 cut(s) 290, 529, 614, 850
Hpy188I TCNGA 9 cut(s) 66, 179, 334, 340, 370, 837, 889, 1170, 1236
Hpy188III TCNNGA 3 cut(s) 245, 535, 800
Hpy8I GTNNAC 4 cut(s) 290, 529, 614, 850
HpyAV CCTTC 4 cut(s) 599, 645, 757, 797
HpyCH4III ACNGT 2 cut(s) 230, 380
HpyCH4IV ACGT 1 cut(s) 1126
HpyF10VI GCNNNNNNNGC 4 cut(s) 358, 785, 1226, 1262
HpyF3I CTNAG 2 cut(s) 236, 369
HpySE526I ACGT 1 cut(s) 1126
HspAI GCGC 1 cut(s) 913
KpnI GGTACC 2 cut(s) 257, 428
Kzo9I GATC 5 cut(s) 232, 557, 574, 832, 1165
LmnI GCTCC 2 cut(s) 403, 1109
Lsp1109I GCAGC 2 cut(s) 89, 339
LweI GCATC 6 cut(s) 310, 385, 689, 775, 889, 1216
MabI ACCWGGT 1 cut(s) 816
MaeI CTAG 3 cut(s) 207, 356, 555
MaeII ACGT 1 cut(s) 1126
MalI GATC 5 cut(s) 234, 559, 576, 834, 1167
MbiI CCGCTC 1 cut(s) 62
MboI GATC 5 cut(s) 232, 557, 574, 832, 1165
MluCI AATT 7 cut(s) 18, 519, 724, 1130, 1211, 1230, 1247
MluI ACGCGT 1 cut(s) 1033
MlyI GAGTC 3 cut(s) 17, 183, 1003
MmeI TCCRAC 3 cut(s) 157, 444, 957
Mph1103I ATGCAT 3 cut(s) 303, 904, 970
MroXI GAANNNNTTC 3 cut(s) 483, 1058, 1175
MseI TTAA 3 cut(s) 108, 923, 1082
MslI CAYNNNNRTG 1 cut(s) 897
MspI CCGG 3 cut(s) 44, 86, 647
MspR9I CCNGG 4 cut(s) 76, 155, 818, 1262
MvaI CCWGG 4 cut(s) 76, 155, 818, 1262
MvnI CGCG 2 cut(s) 915, 1035
MwoI GCNNNNNNNGC 4 cut(s) 358, 785, 1226, 1262
NcoI CCATGG 1 cut(s) 1047
NdeII GATC 5 cut(s) 232, 557, 574, 832, 1165
NlaIV GGNNCC 3 cut(s) 255, 426, 812
NsiI ATGCAT 3 cut(s) 303, 904, 970
NspI RCATGY 3 cut(s) 301, 968, 1096
NspV TTCGAA 1 cut(s) 22
PaeI GCATGC 2 cut(s) 301, 968
PagI TCATGA 1 cut(s) 244
PdmI GAANNNNTTC 3 cut(s) 483, 1058, 1175
PfeI GAWTC 7 cut(s) 71, 136, 335, 365, 740, 1176, 1196
PflFI GACNNNGTC 1 cut(s) 989
PflMI CCANNNNNTGG 3 cut(s) 146, 671, 820
PfoI TCCNGGA 1 cut(s) 74
PkrI GCNGC 3 cut(s) 104, 152, 354
PleI GAGTC 3 cut(s) 16, 182, 1003
PpsI GAGTC 3 cut(s) 16, 182, 1003
Ppu21I YACGTR 1 cut(s) 1127
Psp6I CCWGG 4 cut(s) 74, 153, 816, 1260
PspGI CCWGG 4 cut(s) 74, 153, 816, 1260
PspN4I GGNNCC 3 cut(s) 255, 426, 812
PspPI GGNCC 2 cut(s) 359, 1310
PsyI GACNNNGTC 1 cut(s) 989
RsaI GTAC 6 cut(s) 255, 426, 439, 755, 918, 1038
RsaNI GTAC 6 cut(s) 254, 425, 438, 754, 917, 1037
RseI CAYNNNNRTG 1 cut(s) 897
SaqAI TTAA 3 cut(s) 108, 923, 1082
SatI GCNGC 3 cut(s) 103, 151, 353
Sau3AI GATC 5 cut(s) 232, 557, 574, 832, 1165
Sau96I GGNCC 2 cut(s) 359, 1310
ScaI AGTACT 2 cut(s) 439, 755
SchI GAGTC 3 cut(s) 17, 183, 1003
ScrFI CCNGG 4 cut(s) 76, 155, 818, 1262
SexAI ACCWGGT 1 cut(s) 816
SfaNI GCATC 6 cut(s) 310, 385, 689, 775, 889, 1216
SfuI TTCGAA 1 cut(s) 22
SmiMI CAYNNNNRTG 1 cut(s) 897
SmlI CTYRAG 1 cut(s) 549
SmoI CTYRAG 1 cut(s) 549
SphI GCATGC 2 cut(s) 301, 968
Sse9I AATT 7 cut(s) 18, 519, 724, 1130, 1211, 1230, 1247
SsiI CCGC 4 cut(s) 60, 89, 150, 1016
SspI AATATT 2 cut(s) 82, 161
SspMI CTAG 3 cut(s) 207, 356, 555
StyD4I CCNGG 4 cut(s) 74, 153, 816, 1260
StyI CCWWGG 2 cut(s) 1047, 1158
TaaI ACNGT 2 cut(s) 230, 380
TaiI ACGT 1 cut(s) 1129
TaqI TCGA 2 cut(s) 22, 143
TasI AATT 7 cut(s) 18, 519, 724, 1130, 1211, 1230, 1247
TatI WGTACW 2 cut(s) 437, 753
TauI GCSGC 1 cut(s) 153
TfiI GAWTC 7 cut(s) 71, 136, 335, 365, 740, 1176, 1196
Tru1I TTAA 3 cut(s) 108, 923, 1082
Tru9I TTAA 3 cut(s) 108, 923, 1082
TscAI CASTG 2 cut(s) 264, 1110
TseI GCWGC 2 cut(s) 102, 352
TspDTI ATGAA 4 cut(s) 462, 554, 764, 1209
TspGWI ACGGA 1 cut(s) 358
TspRI CASTG 2 cut(s) 264, 1110
Tth111I GACNNNGTC 1 cut(s) 989
Van91I CCANNNNNTGG 3 cut(s) 146, 671, 820
XapI RAATTY 2 cut(s) 18, 1130
XceI RCATGY 3 cut(s) 301, 968, 1096
XmiI GTMKAC 1 cut(s) 289
XmnI GAANNNNTTC 3 cut(s) 483, 1058, 1175
XspI CTAG 3 cut(s) 207, 356, 555
ZrmI AGTACT 2 cut(s) 439, 755
Zsp2I ATGCAT 3 cut(s) 303, 904, 970
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.