Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001794

Physical Location & Seq

Genomic Coordinates Forward (+)

52990721 .. 52994871

Gene Structure 4151 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ26007

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGCCTGCATTTTTGGAGGATAAATCACTAATTTCTGTCAACCTCTGGATGAACAATGCTCAAGCTAGATCAAGCACTCACTATGATCCACACCATAACCTTCTCTGCATAGTTTCTGGCTGTAAACAAGTGGTTTTATGGCCTCCTTCAGCAACTCCGGTGTTATACCCTATGCCAATATATGGGGAGGCATCAAATCATAGTTCTGTTCCTTTAGACAACCTTGACTTTTCAAATTATCCAAGAGCAGAATCTTCAATGGAGTACTCGCAGAAGGTTATTCTTCATGCAGGGGATGCATTATTTATTCCTGAAGGCTGGTTCCACCAGGTGGATAGTGATGATCTGACAATCGCTGTCAACTTTTGGTGGCAATCAAACATAATGTCATGCTTGTCAGAACACATGGATGCATATTATTTGCGCGTACTATTAAGAAGAATGACAATTCGAGAAATGAACCAAGTGCTACCTAAAGCTTCTTCAGTGGAAATGGCGAACACAAAGAGGCATGCATGTAAGCTGCTTAATAACGGACAAGTAGATCAGAATGACAAGGATTTGGATCAGGCGAGTGAGAGGAAGGATCTTGAAGGAAAGGAGCTAAAACAAGAAACTACTTTGCATGAATTGGAACCGGTTGCCGTCCATGCTCTTCATGAACTTGTTTCTTTAGTTCACAGTCATGTCAATGCTGCAGAGCAAAGACAACCGGAGCAATCCACTTCAACAACTGATTCTGCACTCAGTGTCAAGGACAAGGGTAGCAAAGTTGTGAGAGTACATGCATTTAGGTTGGAAGATGACCCAGTCGCTAACATTATTTGGACTCTTCCGCCATGCACCCTTCAACGCATACTTCTTGCCATGGTGAAAAGTTTCCCAAGAACTTTGGATGGTTTAATACTGCACATGCTTACACCAGTGGGAGCAGAAGTGCTTACACGTAAATTTGAAGAAATGGATGACCTGAACACCAAGGAAGATCGGAACAGATTCTACCAAGTTTTCTATGAATCATTCAACGACCAATTTGCTGCAATGGATGCAATTCTGAATGGAAAGGAATTATTTGCCCTCCAGGCATACAAGAATGTGTTAGATAAGAACATAGGAGTAGATTGGGGTGGGCCAAGACCAGTTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000086 GO:0000278 GO:0003674 GO:0003682 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007049 GO:0008150 GO:0008152 GO:0008214 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016491 GO:0016569 GO:0016570 GO:0016577 GO:0016705 GO:0016706 GO:0019219 GO:0019222 GO:0019538 GO:0022402 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032451 GO:0032452 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044839 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051213 GO:0051252 GO:0051254 GO:0051276 GO:0051864 GO:0055114 GO:0060255 GO:0065007 GO:0070076 GO:0070544 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:1901564 GO:1902680 GO:1903047 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_8

Protein Analysis

382

Amino Acids

43.35

Weight (kDa)

5.51

Isoelectric Point (pI)

49.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_8	PF13621	10 - 127	1.1e-41	Cupin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001794)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26135 AT5G19840 AT5G19840
fragaria_vesca	FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940
malus_domestica	MD03G1258000.v1.1 MD03G1258100.v1.1 MD11G1278700.v1.1
prunus_persica	Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1
pyrus_communis	pycom03g20440 pycom11g24620 pycom11g24630
rosa_chinensis	RchiOBHm_Chr6g0289901 RchiOBHm_Chr6g0289911 RchiOBHm_Chr6g0289951
rosa_laevigata	RLG00000012257
rosa_multiflora	Rmu_sc0001312.1_g000002 Rmu_sc0023926.1_g000002
rosa_roxburghii	Rroxscaffold_7G00177480
rosa_rugosa	Rorug06G0208000
rosa_samantha	Rh6AG319300 Rh6BG326300 Rh6BG326400 Rh6CG332300 Rh6DG318000 Rh6DG318100
rosa_wichuraiana	Rw0G009780 Rw0G009800 Rw6G027540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	182, 331
AccII	CGCG	1 cut(s)	426
AciI	CCGC	1 cut(s)	836
AclWI	GGATC	3 cut(s)	80, 573, 594
AcsI	RAATTY	1 cut(s)	950
AcuI	CTGAAG	3 cut(s)	132, 333, 468
AdeI	CACNNNGTG	2 cut(s)	331, 749
AfaI	GTAC	3 cut(s)	266, 429, 783
AfiI	CCNNNNNNNGG	2 cut(s)	182, 331
AflIII	ACRYGT	1 cut(s)	944
AgeI	ACCGGT	1 cut(s)	637
AgsI	TTSAA	7 cut(s)	234, 258, 593, 729, 851, 956, 1024
AjnI	CCWGG	2 cut(s)	327, 1080
AluBI	AGCT	4 cut(s)	65, 479, 523, 604
AluI	AGCT	4 cut(s)	65, 479, 523, 604
AlwI	GGATC	3 cut(s)	80, 573, 594
AoxI	GGCC	2 cut(s)	140, 1130
ApeKI	GCWGC	3 cut(s)	523, 695, 1037
ApoI	RAATTY	1 cut(s)	950
ArsI	GACNNNNNNTTYG	2 cut(s)	371, 403
AsiGI	ACCGGT	1 cut(s)	637
Asp700I	GAANNNNTTC	2 cut(s)	878, 995
AspLEI	GCGC	1 cut(s)	426
AspS9I	GGNCC	1 cut(s)	1130
AsuHPI	GGTGA	1 cut(s)	883
BbvI	GCAGC	3 cut(s)	510, 682, 1024
BccI	CCATC	1 cut(s)	890
BceAI	ACGGC	1 cut(s)	629
BcgI	CGANNNNNNTGC	2 cut(s)	1016, 1050
BciT130I	CCWGG	2 cut(s)	329, 1082
BfaI	CTAG	1 cut(s)	66
BfmI	CTRYAG	1 cut(s)	696
BglI	GCCNNNNNGGC	1 cut(s)	1082
BisI	GCNGC	3 cut(s)	524, 696, 1038
BlsI	GCNGC	3 cut(s)	525, 697, 1039
BmcAI	AGTACT	1 cut(s)	266
Bme1390I	CCNGG	2 cut(s)	329, 1082
BmgT120I	GGNCC	1 cut(s)	1130
BmiI	GGNNCC	2 cut(s)	323, 636
BmrFI	CCNGG	2 cut(s)	329, 1082
BmrI	ACTGGG	1 cut(s)	803
BmsI	GCATC	4 cut(s)	200, 286, 400, 1036
BmuI	ACTGGG	1 cut(s)	803
BpmI	CTGGAG	1 cut(s)	1064
BpuEI	CTTGAG	1 cut(s)	45
BsaAI	YACGTR	1 cut(s)	947
BsaBI	GATNNNNATC	1 cut(s)	564
BsaJI	CCNNGG	2 cut(s)	867, 978
BsaWI	WCCGGW	3 cut(s)	157, 637, 712
BsaXI	ACNNNNNCTCC	2 cut(s)	921, 951
Bsc4I	CCNNNNNNNGG	2 cut(s)	182, 331
Bse118I	RCCGGY	1 cut(s)	637
Bse1I	ACTGG	3 cut(s)	809, 923, 1139
Bse3DI	GCAATG	1 cut(s)	1047
Bse8I	GATNNNNATC	1 cut(s)	564
BseBI	CCWGG	2 cut(s)	329, 1082
BseDI	CCNNGG	2 cut(s)	867, 978
BseGI	GGATG	6 cut(s)	54, 301, 415, 901, 970, 1051
BseJI	GATNNNNATC	1 cut(s)	564
BseLI	CCNNNNNNNGG	2 cut(s)	182, 331
BseMI	GCAATG	1 cut(s)	1047
BseMII	CTCAG	1 cut(s)	760
BseNI	ACTGG	3 cut(s)	809, 923, 1139
BseXI	GCAGC	3 cut(s)	510, 682, 1024
BsgI	GTGCAG	2 cut(s)	726, 893
Bsh1236I	CGCG	1 cut(s)	426
BshFI	GGCC	2 cut(s)	142, 1132
BshTI	ACCGGT	1 cut(s)	637
BsiSI	CCGG	3 cut(s)	158, 638, 713
BslI	CCNNNNNNNGG	2 cut(s)	182, 331
BsnI	GGCC	2 cut(s)	142, 1132
Bsp143I	GATC	7 cut(s)	68, 85, 343, 544, 565, 586, 985
Bsp19I	CCATGG	1 cut(s)	867
BspACI	CCGC	1 cut(s)	836
BspANI	GGCC	2 cut(s)	142, 1132
BspCNI	CTCAG	1 cut(s)	759
BspFNI	CGCG	1 cut(s)	426
BspHI	TCATGA	1 cut(s)	658
BspLI	GGNNCC	2 cut(s)	323, 636
BspMAI	CTGCAG	1 cut(s)	700
BspPI	GGATC	3 cut(s)	80, 573, 594
BspQI	GCTCTTC	1 cut(s)	660
BsrDI	GCAATG	1 cut(s)	1047
BsrFI	RCCGGY	1 cut(s)	637
BsrI	ACTGG	3 cut(s)	809, 923, 1139
BssAI	RCCGGY	1 cut(s)	637
BssECI	CCNNGG	2 cut(s)	867, 978
BssMI	GATC	7 cut(s)	68, 85, 343, 544, 565, 586, 985
BssT1I	CCWWGG	2 cut(s)	867, 978
Bst2UI	CCWGG	2 cut(s)	329, 1082
Bst4CI	ACNGT	1 cut(s)	683
Bst6I	CTCTTC	2 cut(s)	660, 837
BstAPI	GCANNNNNTGC	2 cut(s)	296, 1046
BstBAI	YACGTR	1 cut(s)	947
BstC8I	GCNNGC	2 cut(s)	6, 513
BstDEI	CTNAG	1 cut(s)	746
BstDSI	CCRYGG	1 cut(s)	867
BstF5I	GGATG	6 cut(s)	54, 301, 415, 901, 970, 1051
BstFNI	CGCG	1 cut(s)	426
BstHHI	GCGC	1 cut(s)	426
BstKTI	GATC	7 cut(s)	71, 88, 346, 547, 568, 589, 988
BstMBI	GATC	7 cut(s)	68, 85, 343, 544, 565, 586, 985
BstMWI	GCNNNNNNNGC	4 cut(s)	296, 650, 1046, 1082
BstNI	CCWGG	2 cut(s)	329, 1082
BstNSI	RCATGY	4 cut(s)	515, 519, 788, 916
BstSCI	CCNGG	2 cut(s)	327, 1080
BstSFI	CTRYAG	1 cut(s)	696
BstUI	CGCG	1 cut(s)	426
BstV1I	GCAGC	3 cut(s)	510, 682, 1024
BstX2I	RGATCY	1 cut(s)	586
BstYI	RGATCY	1 cut(s)	586
BsuRI	GGCC	2 cut(s)	142, 1132
BtgI	CCRYGG	1 cut(s)	867
BtsCI	GGATG	6 cut(s)	54, 301, 415, 901, 970, 1051
BtsIMutI	CAGTG	3 cut(s)	492, 754, 930
Cac8I	GCNNGC	2 cut(s)	6, 513
CciI	TCATGA	1 cut(s)	658
CfoI	GCGC	1 cut(s)	426
Cfr10I	RCCGGY	1 cut(s)	637
Cfr13I	GGNCC	1 cut(s)	1130
CsiI	ACCWGGT	1 cut(s)	327
Csp6I	GTAC	3 cut(s)	265, 428, 782
CspAI	ACCGGT	1 cut(s)	637
CviJI	RGCY	8 cut(s)	65, 120, 142, 318, 479, 523, 604, 1132
CviKI_1	RGCY	8 cut(s)	65, 120, 142, 318, 479, 523, 604, 1132
CviQI	GTAC	3 cut(s)	265, 428, 782
DdeI	CTNAG	1 cut(s)	746
DpnI	GATC	7 cut(s)	70, 87, 345, 546, 567, 588, 987
DpnII	GATC	7 cut(s)	68, 85, 343, 544, 565, 586, 985
DraIII	CACNNNGTG	2 cut(s)	331, 749
Eam1104I	CTCTTC	2 cut(s)	660, 837
EarI	CTCTTC	2 cut(s)	660, 837
EciI	GGCGGA	1 cut(s)	825
Eco130I	CCWWGG	2 cut(s)	867, 978
Eco57I	CTGAAG	3 cut(s)	132, 333, 468
EcoRII	CCWGG	2 cut(s)	327, 1080
EcoT14I	CCWWGG	2 cut(s)	867, 978
EcoT22I	ATGCAT	4 cut(s)	301, 415, 517, 790
ErhI	CCWWGG	2 cut(s)	867, 978
Fnu4HI	GCNGC	3 cut(s)	524, 696, 1038
FokI	GGATG	6 cut(s)	61, 308, 422, 908, 977, 1058
Fsp4HI	GCNGC	3 cut(s)	524, 696, 1038
FspBI	CTAG	1 cut(s)	66
GlaI	GCGC	1 cut(s)	425
GluI	GCNGC	3 cut(s)	524, 696, 1038
GsuI	CTGGAG	1 cut(s)	1064
HaeIII	GGCC	2 cut(s)	142, 1132
HapII	CCGG	3 cut(s)	158, 638, 713
HhaI	GCGC	1 cut(s)	426
Hin6I	GCGC	1 cut(s)	424
HinP1I	GCGC	1 cut(s)	424
HincII	GTYRAC	2 cut(s)	40, 361
HindII	GTYRAC	2 cut(s)	40, 361
HindIII	AAGCTT	1 cut(s)	477
HinfI	GANTC	5 cut(s)	251, 737, 829, 996, 1016
HpaII	CCGG	3 cut(s)	158, 638, 713
HphI	GGTGA	1 cut(s)	883
Hpy166II	GTNNAC	4 cut(s)	40, 125, 361, 679
Hpy188I	TCNGA	5 cut(s)	348, 400, 549, 990, 1056
Hpy188III	TCNNGA	5 cut(s)	46, 311, 452, 590, 659
Hpy8I	GTNNAC	4 cut(s)	40, 125, 361, 679
HpyAV	CCTTC	7 cut(s)	110, 156, 268, 308, 577, 587, 857
HpyCH4III	ACNGT	1 cut(s)	683
HpyCH4IV	ACGT	1 cut(s)	946
HpyF10VI	GCNNNNNNNGC	4 cut(s)	296, 650, 1046, 1082
HpyF3I	CTNAG	1 cut(s)	746
HpySE526I	ACGT	1 cut(s)	946
HspAI	GCGC	1 cut(s)	424
Kzo9I	GATC	7 cut(s)	68, 85, 343, 544, 565, 586, 985
LguI	GCTCTTC	1 cut(s)	660
LmnI	GCTCC	3 cut(s)	601, 715, 929
Lsp1109I	GCAGC	3 cut(s)	510, 682, 1024
LweI	GCATC	4 cut(s)	200, 286, 400, 1036
MabI	ACCWGGT	1 cut(s)	327
MaeI	CTAG	1 cut(s)	66
MaeII	ACGT	1 cut(s)	946
MalI	GATC	7 cut(s)	70, 87, 345, 546, 567, 588, 987
MboI	GATC	7 cut(s)	68, 85, 343, 544, 565, 586, 985
MboII	GAAGA	9 cut(s)	246, 275, 450, 474, 647, 812, 824, 968, 995
MflI	RGATCY	1 cut(s)	586
MluCI	AATT	8 cut(s)	30, 235, 447, 629, 950, 1031, 1050, 1067
MlyI	GAGTC	1 cut(s)	823
MmeI	TCCRAC	1 cut(s)	777
MnlI	CCTC	7 cut(s)	10, 53, 153, 181, 501, 573, 1088
Mph1103I	ATGCAT	4 cut(s)	301, 415, 517, 790
MroXI	GAANNNNTTC	2 cut(s)	878, 995
MseI	TTAA	3 cut(s)	434, 528, 902
MslI	CAYNNNNRTG	3 cut(s)	408, 684, 690
MspI	CCGG	3 cut(s)	158, 638, 713
MspR9I	CCNGG	2 cut(s)	329, 1082
MvaI	CCWGG	2 cut(s)	329, 1082
MvnI	CGCG	1 cut(s)	426
MwoI	GCNNNNNNNGC	4 cut(s)	296, 650, 1046, 1082
NcoI	CCATGG	1 cut(s)	867
NdeII	GATC	7 cut(s)	68, 85, 343, 544, 565, 586, 985
NlaIV	GGNNCC	2 cut(s)	323, 636
NsiI	ATGCAT	4 cut(s)	301, 415, 517, 790
NspI	RCATGY	4 cut(s)	515, 519, 788, 916
PaeI	GCATGC	1 cut(s)	515
PagI	TCATGA	1 cut(s)	658
PciSI	GCTCTTC	1 cut(s)	660
PdmI	GAANNNNTTC	2 cut(s)	878, 995
PfeI	GAWTC	4 cut(s)	251, 737, 996, 1016
PflFI	GACNNNGTC	1 cut(s)	809
PflMI	CCANNNNNTGG	2 cut(s)	182, 331
PinAI	ACCGGT	1 cut(s)	637
PkrI	GCNGC	3 cut(s)	525, 697, 1039
PleI	GAGTC	1 cut(s)	823
PpsI	GAGTC	1 cut(s)	823
Ppu21I	YACGTR	1 cut(s)	947
Psp6I	CCWGG	2 cut(s)	327, 1080
PspGI	CCWGG	2 cut(s)	327, 1080
PspN4I	GGNNCC	2 cut(s)	323, 636
PspPI	GGNCC	1 cut(s)	1130
PsrI	GAACNNNNNNTAC	2 cut(s)	983, 1015
PstI	CTGCAG	1 cut(s)	700
PsuI	RGATCY	1 cut(s)	586
PsyI	GACNNNGTC	1 cut(s)	809
RsaI	GTAC	3 cut(s)	266, 429, 783
RsaNI	GTAC	3 cut(s)	265, 428, 782
RseI	CAYNNNNRTG	3 cut(s)	408, 684, 690
SapI	GCTCTTC	1 cut(s)	660
SaqAI	TTAA	3 cut(s)	434, 528, 902
SatI	GCNGC	3 cut(s)	524, 696, 1038
Sau3AI	GATC	7 cut(s)	68, 85, 343, 544, 565, 586, 985
Sau96I	GGNCC	1 cut(s)	1130
ScaI	AGTACT	1 cut(s)	266
SchI	GAGTC	1 cut(s)	823
ScrFI	CCNGG	2 cut(s)	329, 1082
SexAI	ACCWGGT	1 cut(s)	327
SfaNI	GCATC	4 cut(s)	200, 286, 400, 1036
SfcI	CTRYAG	1 cut(s)	696
SmiMI	CAYNNNNRTG	3 cut(s)	408, 684, 690
SmlI	CTYRAG	1 cut(s)	60
SmoI	CTYRAG	1 cut(s)	60
SphI	GCATGC	1 cut(s)	515
Sse9I	AATT	8 cut(s)	30, 235, 447, 629, 950, 1031, 1050, 1067
SsiI	CCGC	1 cut(s)	836
SspMI	CTAG	1 cut(s)	66
StyD4I	CCNGG	2 cut(s)	327, 1080
StyI	CCWWGG	2 cut(s)	867, 978
TaaI	ACNGT	1 cut(s)	683
TaiI	ACGT	1 cut(s)	949
TaqI	TCGA	1 cut(s)	451
TasI	AATT	8 cut(s)	30, 235, 447, 629, 950, 1031, 1050, 1067
TatI	WGTACW	2 cut(s)	264, 781
TfiI	GAWTC	4 cut(s)	251, 737, 996, 1016
Tru1I	TTAA	3 cut(s)	434, 528, 902
Tru9I	TTAA	3 cut(s)	434, 528, 902
TscAI	CASTG	3 cut(s)	492, 754, 930
TseI	GCWGC	3 cut(s)	523, 695, 1037
TspDTI	ATGAA	7 cut(s)	65, 275, 473, 642, 647, 675, 1029
TspGWI	ACGGA	1 cut(s)	549
TspRI	CASTG	3 cut(s)	492, 754, 930
Tth111I	GACNNNGTC	1 cut(s)	809
Van91I	CCANNNNNTGG	2 cut(s)	182, 331
XapI	RAATTY	1 cut(s)	950
XceI	RCATGY	4 cut(s)	515, 519, 788, 916
XmnI	GAANNNNTTC	2 cut(s)	878, 995
XspI	CTAG	1 cut(s)	66
ZrmI	AGTACT	1 cut(s)	266
Zsp2I	ATGCAT	4 cut(s)	301, 415, 517, 790

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.