Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0001794

Physical Location & Seq

Genomic Coordinates Forward (+)

27546032 .. 27548884

Gene Structure 2853 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g24630.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGATGCATATTATCTGCGCATAATATTAAGAAGACTGACAGATAGAGAAATGGACCGAGTGCTGCCTGTACCTTCTTTATCTGAAATGGAGAACATGAAGAAGCATACTGGTATAGTGCTTAAAAAAGGACAAGTAGATCACAATGACAACGCTTTGGATCAGGCATGTGAGAGAAAGGATCTTAAAGGGAAGGAAGTAGAACAAAGATTTATGTCGCATGTACTGGAGCCCCTTGCCGTCCTTGCTCTTCATGAACTTATTTCTTTAGTTCATGGTCATGTTAATGCTGCTGAGCAAAGACAACCAGTGCAATCCGCTTCAACAACTGCTTCTGCAGCTAATGTGAAAGATGAATGCATCAAAGTTGTGAGACCGGGTTCGTTTAGCTTGGAAGATGATCCATTTGCTAAAATCTTTTGGACTCTTCACCCCATCACTTTGAAAAATGTATTTCTTGCCATGGTGAATAGTTTTCCAAGAACTTTGGAGGCTTTAATACTGAACTTGCTTTCACCAGTGGGAGCAGAAGTGCTTACCCGCAAATTTGAAGGAATGGATCTACTGATCACCGAGGAAGAACGGAACAATTTCTACAAGGCTTTCTATGGGGCATTTGACGACCAATTCGCAGCAATGGATGCAATTTTGAATGGGAAAGAAGTATTTGCACAACAGGCATACAAGAACGTATTGGATAAGTATTTGGGAGTAGACTGGAGTGGGCCGAAACCCGGGGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000086 GO:0000278 GO:0003674 GO:0003682 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007049 GO:0008150 GO:0008152 GO:0008214 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016491 GO:0016569 GO:0016570 GO:0016577 GO:0016705 GO:0016706 GO:0019219 GO:0019222 GO:0019538 GO:0022402 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032451 GO:0032452 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044839 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051213 GO:0051252 GO:0051254 GO:0051276 GO:0051864 GO:0055114 GO:0060255 GO:0065007 GO:0070076 GO:0070544 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:1901564 GO:1902680 GO:1903047 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_8

Protein Analysis

248

Amino Acids

27.86

Weight (kDa)

5.83

Isoelectric Point (pI)

34.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001794)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26135 AT5G19840 AT5G19840
fragaria_vesca	FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940
malus_domestica	MD03G1258000.v1.1 MD03G1258100.v1.1 MD11G1278700.v1.1
prunus_persica	Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1
pyrus_communis	pycom03g20440 pycom11g24620 pycom11g24630
rosa_chinensis	RchiOBHm_Chr6g0289901 RchiOBHm_Chr6g0289911 RchiOBHm_Chr6g0289951
rosa_laevigata	RLG00000012257
rosa_multiflora	Rmu_sc0001312.1_g000002 Rmu_sc0023926.1_g000002
rosa_roxburghii	Rroxscaffold_7G00177480
rosa_rugosa	Rorug06G0208000
rosa_samantha	Rh6AG319300 Rh6BG326300 Rh6BG326400 Rh6CG332300 Rh6DG318000 Rh6DG318100
rosa_wichuraiana	Rw0G009780 Rw0G009800 Rw6G027540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	20
AccI	GTMKAC	1 cut(s)	714
AciI	CCGC	2 cut(s)	318, 541
AclWI	GGATC	4 cut(s)	168, 189, 395, 567
AcsI	RAATTY	1 cut(s)	545
AfaI	GTAC	2 cut(s)	72, 225
AfiI	CCNNNNNNNGG	1 cut(s)	734
AgsI	TTSAA	4 cut(s)	324, 445, 551, 652
AluBI	AGCT	2 cut(s)	341, 390
AluI	AGCT	2 cut(s)	341, 390
Alw26I	GTCTC	1 cut(s)	367
AlwI	GGATC	4 cut(s)	168, 189, 395, 567
Ama87I	CYCGRG	1 cut(s)	734
AoxI	GGCC	1 cut(s)	725
ApeKI	GCWGC	4 cut(s)	64, 290, 338, 632
ApoI	RAATTY	1 cut(s)	545
ArsI	GACNNNNNNTTYG	2 cut(s)	611, 643
Asp700I	GAANNNNTTC	1 cut(s)	590
AspLEI	GCGC	1 cut(s)	21
AspS9I	GGNCC	2 cut(s)	55, 725
AsuC2I	CCSGG	3 cut(s)	378, 735, 736
AsuHPI	GGTGA	4 cut(s)	422, 478, 507, 562
AvaI	CYCGRG	1 cut(s)	734
AvaII	GGWCC	1 cut(s)	55
BanII	GRGCYC	1 cut(s)	234
BbsI	GAAGAC	1 cut(s)	40
BbvI	GCAGC	4 cut(s)	51, 277, 350, 644
BccI	CCATC	1 cut(s)	443
BceAI	ACGGC	1 cut(s)	224
BclI	TGATCA	1 cut(s)	567
BcnI	CCSGG	3 cut(s)	378, 735, 736
BcoDI	GTCTC	1 cut(s)	367
BfmI	CTRYAG	1 cut(s)	336
BisI	GCNGC	4 cut(s)	65, 291, 339, 633
BlpI	GCTNAGC	1 cut(s)	294
BlsI	GCNGC	4 cut(s)	66, 292, 340, 634
Bme1390I	CCNGG	3 cut(s)	378, 735, 736
Bme18I	GGWCC	1 cut(s)	55
BmeT110I	CYCGRG	1 cut(s)	734
BmgT120I	GGNCC	2 cut(s)	55, 725
BmiI	GGNNCC	1 cut(s)	231
BmrFI	CCNGG	3 cut(s)	378, 735, 736
BmsI	GCATC	2 cut(s)	369, 631
BpiI	GAAGAC	1 cut(s)	40
BpmI	CTGGAG	2 cut(s)	248, 739
Bpu1102I	GCTNAGC	1 cut(s)	294
BpuMI	CCSGG	3 cut(s)	378, 735, 736
BsaI	GGTCTC	1 cut(s)	367
BsaJI	CCNNGG	4 cut(s)	462, 573, 734, 735
BsaXI	ACNNNNNCTCC	2 cut(s)	516, 546
Bsc4I	CCNNNNNNNGG	1 cut(s)	734
Bse1I	ACTGG	5 cut(s)	115, 231, 308, 518, 722
Bse3DI	GCAATG	1 cut(s)	642
BseDI	CCNNGG	4 cut(s)	462, 573, 734, 735
BseGI	GGATG	2 cut(s)	10, 646
BseLI	CCNNNNNNNGG	1 cut(s)	734
BseMI	GCAATG	1 cut(s)	642
BseMII	CTCAG	1 cut(s)	285
BseNI	ACTGG	5 cut(s)	115, 231, 308, 518, 722
BseXI	GCAGC	4 cut(s)	51, 277, 350, 644
BshFI	GGCC	1 cut(s)	727
BsiHKCI	CYCGRG	1 cut(s)	734
BsiSI	CCGG	2 cut(s)	377, 735
BslI	CCNNNNNNNGG	1 cut(s)	734
BsmAI	GTCTC	1 cut(s)	367
BsmI	GAATGC	1 cut(s)	362
BsnI	GGCC	1 cut(s)	727
Bso31I	GGTCTC	1 cut(s)	367
BsoBI	CYCGRG	1 cut(s)	734
Bsp1286I	GDGCHC	1 cut(s)	234
Bsp143I	GATC	6 cut(s)	139, 160, 181, 400, 559, 567
Bsp1720I	GCTNAGC	1 cut(s)	294
Bsp19I	CCATGG	1 cut(s)	462
BspACI	CCGC	2 cut(s)	318, 541
BspANI	GGCC	1 cut(s)	727
BspCNI	CTCAG	1 cut(s)	286
BspHI	TCATGA	1 cut(s)	253
BspLI	GGNNCC	1 cut(s)	231
BspMAI	CTGCAG	1 cut(s)	340
BspPI	GGATC	4 cut(s)	168, 189, 395, 567
BspQI	GCTCTTC	1 cut(s)	255
BspTNI	GGTCTC	1 cut(s)	367
BsrDI	GCAATG	1 cut(s)	642
BsrI	ACTGG	5 cut(s)	115, 231, 308, 518, 722
BssECI	CCNNGG	4 cut(s)	462, 573, 734, 735
BssMI	GATC	6 cut(s)	139, 160, 181, 400, 559, 567
BssT1I	CCWWGG	1 cut(s)	462
Bst6I	CTCTTC	2 cut(s)	255, 432
BstAPI	GCANNNNNTGC	1 cut(s)	641
BstDEI	CTNAG	1 cut(s)	294
BstDSI	CCRYGG	1 cut(s)	462
BstF5I	GGATG	2 cut(s)	10, 646
BstHHI	GCGC	1 cut(s)	21
BstKTI	GATC	6 cut(s)	142, 163, 184, 403, 562, 570
BstMAI	GTCTC	1 cut(s)	367
BstMBI	GATC	6 cut(s)	139, 160, 181, 400, 559, 567
BstMWI	GCNNNNNNNGC	4 cut(s)	245, 338, 641, 677
BstNSI	RCATGY	2 cut(s)	171, 224
BstSCI	CCNGG	3 cut(s)	376, 733, 734
BstSFI	CTRYAG	1 cut(s)	336
BstV1I	GCAGC	4 cut(s)	51, 277, 350, 644
BstV2I	GAAGAC	1 cut(s)	40
BstX2I	RGATCY	2 cut(s)	181, 559
BstYI	RGATCY	2 cut(s)	181, 559
BsuRI	GGCC	1 cut(s)	727
BtgI	CCRYGG	1 cut(s)	462
BtsCI	GGATG	2 cut(s)	10, 646
BtsIMutI	CAGTG	2 cut(s)	315, 525
CciI	TCATGA	1 cut(s)	253
CfoI	GCGC	1 cut(s)	21
Cfr13I	GGNCC	2 cut(s)	55, 725
Cfr9I	CCCGGG	1 cut(s)	734
Csp6I	GTAC	2 cut(s)	71, 224
CviAII	CATG	7 cut(s)	97, 168, 221, 254, 275, 281, 463
CviJI	RGCY	6 cut(s)	232, 341, 390, 494, 602, 727
CviKI_1	RGCY	6 cut(s)	232, 341, 390, 494, 602, 727
CviQI	GTAC	2 cut(s)	71, 224
DdeI	CTNAG	1 cut(s)	294
DpnI	GATC	6 cut(s)	141, 162, 183, 402, 561, 569
DpnII	GATC	6 cut(s)	139, 160, 181, 400, 559, 567
Eam1104I	CTCTTC	2 cut(s)	255, 432
EarI	CTCTTC	2 cut(s)	255, 432
Eco130I	CCWWGG	1 cut(s)	462
Eco24I	GRGCYC	1 cut(s)	234
Eco31I	GGTCTC	1 cut(s)	367
Eco47I	GGWCC	1 cut(s)	55
Eco88I	CYCGRG	1 cut(s)	734
EcoT14I	CCWWGG	1 cut(s)	462
EcoT22I	ATGCAT	2 cut(s)	10, 362
EcoT38I	GRGCYC	1 cut(s)	234
ErhI	CCWWGG	1 cut(s)	462
FaeI	CATG	7 cut(s)	100, 171, 224, 257, 278, 284, 466
FatI	CATG	7 cut(s)	96, 167, 220, 253, 274, 280, 462
FauI	CCCGC	1 cut(s)	548
FbaI	TGATCA	1 cut(s)	567
FblI	GTMKAC	1 cut(s)	714
Fnu4HI	GCNGC	4 cut(s)	65, 291, 339, 633
FokI	GGATG	2 cut(s)	17, 653
FriOI	GRGCYC	1 cut(s)	234
Fsp4HI	GCNGC	4 cut(s)	65, 291, 339, 633
FspI	TGCGCA	1 cut(s)	20
GlaI	GCGC	1 cut(s)	20
GluI	GCNGC	4 cut(s)	65, 291, 339, 633
GsuI	CTGGAG	2 cut(s)	248, 739
HaeIII	GGCC	1 cut(s)	727
HapII	CCGG	2 cut(s)	377, 735
HhaI	GCGC	1 cut(s)	21
Hin1II	CATG	7 cut(s)	100, 171, 224, 257, 278, 284, 466
Hin6I	GCGC	1 cut(s)	19
HinP1I	GCGC	1 cut(s)	19
HinfI	GANTC	1 cut(s)	424
HpaII	CCGG	2 cut(s)	377, 735
HphI	GGTGA	4 cut(s)	422, 478, 507, 562
Hpy166II	GTNNAC	1 cut(s)	715
Hpy188I	TCNGA	2 cut(s)	85, 743
Hpy188III	TCNNGA	1 cut(s)	254
Hpy8I	GTNNAC	1 cut(s)	715
HpyAV	CCTTC	3 cut(s)	84, 187, 545
HpyCH4IV	ACGT	1 cut(s)	690
HpyCH4V	TGCA	6 cut(s)	8, 313, 338, 360, 644, 671
HpyF10VI	GCNNNNNNNGC	4 cut(s)	245, 338, 641, 677
HpyF3I	CTNAG	1 cut(s)	294
HpySE526I	ACGT	1 cut(s)	690
Hsp92II	CATG	7 cut(s)	100, 171, 224, 257, 278, 284, 466
HspAI	GCGC	1 cut(s)	19
Ksp22I	TGATCA	1 cut(s)	567
Kzo9I	GATC	6 cut(s)	139, 160, 181, 400, 559, 567
LguI	GCTCTTC	1 cut(s)	255
LmnI	GCTCC	2 cut(s)	229, 524
LpnPI	CCDG	9 cut(s)	81, 96, 149, 212, 321, 390, 531, 662, 703
Lsp1109I	GCAGC	4 cut(s)	51, 277, 350, 644
LweI	GCATC	2 cut(s)	369, 631
MaeII	ACGT	1 cut(s)	690
MalI	GATC	6 cut(s)	141, 162, 183, 402, 561, 569
MboI	GATC	6 cut(s)	139, 160, 181, 400, 559, 567
MboII	GAAGA	6 cut(s)	45, 112, 242, 407, 419, 590
MflI	RGATCY	2 cut(s)	181, 559
MhlI	GDGCHC	1 cut(s)	234
MluCI	AATT	4 cut(s)	545, 589, 626, 645
MlyI	GAGTC	1 cut(s)	418
MnlI	CCTC	2 cut(s)	484, 568
Mph1103I	ATGCAT	2 cut(s)	10, 362
MroXI	GAANNNNTTC	1 cut(s)	590
MseI	TTAA	5 cut(s)	29, 123, 186, 285, 497
MslI	CAYNNNNRTG	2 cut(s)	279, 285
MspI	CCGG	2 cut(s)	377, 735
MspR9I	CCNGG	3 cut(s)	378, 735, 736
Mva1269I	GAATGC	1 cut(s)	362
MwoI	GCNNNNNNNGC	4 cut(s)	245, 338, 641, 677
NciI	CCSGG	3 cut(s)	378, 735, 736
NcoI	CCATGG	1 cut(s)	462
NdeII	GATC	6 cut(s)	139, 160, 181, 400, 559, 567
NlaIII	CATG	7 cut(s)	100, 171, 224, 257, 278, 284, 466
NlaIV	GGNNCC	1 cut(s)	231
NsbI	TGCGCA	1 cut(s)	20
NsiI	ATGCAT	2 cut(s)	10, 362
NspI	RCATGY	2 cut(s)	171, 224
PagI	TCATGA	1 cut(s)	253
PciSI	GCTCTTC	1 cut(s)	255
PctI	GAATGC	1 cut(s)	362
PdmI	GAANNNNTTC	1 cut(s)	590
PkrI	GCNGC	4 cut(s)	66, 292, 340, 634
PleI	GAGTC	1 cut(s)	418
PpsI	GAGTC	1 cut(s)	418
PspN4I	GGNNCC	1 cut(s)	231
PspPI	GGNCC	2 cut(s)	55, 725
PsrI	GAACNNNNNNTAC	2 cut(s)	578, 610
PstI	CTGCAG	1 cut(s)	340
PsuI	RGATCY	2 cut(s)	181, 559
RsaI	GTAC	2 cut(s)	72, 225
RsaNI	GTAC	2 cut(s)	71, 224
RseI	CAYNNNNRTG	2 cut(s)	279, 285
SapI	GCTCTTC	1 cut(s)	255
SaqAI	TTAA	5 cut(s)	29, 123, 186, 285, 497
SatI	GCNGC	4 cut(s)	65, 291, 339, 633
Sau3AI	GATC	6 cut(s)	139, 160, 181, 400, 559, 567
Sau96I	GGNCC	2 cut(s)	55, 725
SchI	GAGTC	1 cut(s)	418
ScrFI	CCNGG	3 cut(s)	378, 735, 736
SduI	GDGCHC	1 cut(s)	234
SetI	ASST	4 cut(s)	76, 343, 392, 693
SfaNI	GCATC	2 cut(s)	369, 631
SfcI	CTRYAG	1 cut(s)	336
SinI	GGWCC	1 cut(s)	55
SmaI	CCCGGG	1 cut(s)	736
SmiMI	CAYNNNNRTG	2 cut(s)	279, 285
Sse9I	AATT	4 cut(s)	545, 589, 626, 645
SsiI	CCGC	2 cut(s)	318, 541
SspI	AATATT	1 cut(s)	27
StyD4I	CCNGG	3 cut(s)	376, 733, 734
StyI	CCWWGG	1 cut(s)	462
TaiI	ACGT	1 cut(s)	693
TaqII	GACCGA	1 cut(s)	72
TasI	AATT	4 cut(s)	545, 589, 626, 645
TatI	WGTACW	1 cut(s)	223
Tru1I	TTAA	5 cut(s)	29, 123, 186, 285, 497
Tru9I	TTAA	5 cut(s)	29, 123, 186, 285, 497
TscAI	CASTG	2 cut(s)	315, 525
TseI	GCWGC	4 cut(s)	64, 290, 338, 632
TspDTI	ATGAA	5 cut(s)	113, 242, 263, 270, 369
TspGWI	ACGGA	1 cut(s)	598
TspMI	CCCGGG	1 cut(s)	734
TspRI	CASTG	2 cut(s)	315, 525
VpaK11BI	GGWCC	1 cut(s)	55
XapI	RAATTY	1 cut(s)	545
XceI	RCATGY	2 cut(s)	171, 224
XmaI	CCCGGG	1 cut(s)	734
XmiI	GTMKAC	1 cut(s)	714
XmnI	GAANNNNTTC	1 cut(s)	590
Zsp2I	ATGCAT	2 cut(s)	10, 362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.