Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00392

Orthogroup ID

OG0001794

Physical Location & Seq

Genomic Coordinates Reverse (-)

13110 .. 29246

Gene Structure 16137 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G009780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

ATGGCGGCCTGGAATATTTGCAAGAATGAGTCGGATTGTGTGTTGTGGAGGCTATGCTATCTAGTTTCTCACCTGTCTTCTAAGGCGATCTTAGAAGTCATGAGAGGGTACCACTGCCATTTTCTGCCTTCATTCGTCTATGTAGACTACGCATGCATCATGCAGAGGATGGTTCTGGTGCCGATAATTAGTACTGAAAATGAAGAGAGGGTTCAGTTGGAAACTTTGAGGGAAGATATTCAAATGCCTGCATTTTTGGAGGATAAATCACTAATTTCTGTCAACCTCTGGATGAACAATGCTCAAGCTAGATCAAGCACTCACTATGATCCACACCATAACCTTCTCTGCATAGTTTCTGGCTGTAAACAAGTGGTTTTATGGCCTCCTTCAGCAACTCCGGTGTTATACCCTATTGGCAGTTGCAGTATGGCTTACTCACAGAAGGTTATTCTTTATGCATGGGATGCACTATTTATTCCTGAAGGCTATAGTGATGATCTGACAATCGCTGTCAACTTTTGGTGGCAATCAAACATAATGTCAAGCATGTCAGAACACATGGATGCATATTATTTGCGCATACTATTAAGAAGAATGACAGTTCGAGAAATGAACCAAGTGCTACCTAAAGCGTCTTTAGTGGAAATGGCGAACACAAAGAGGCATGCATGTAAGCTGCTTAATAACGGACAAGTAGGATTTGGACAGGTGAGTGAGAGGAAGGATCTTGAAGGAAAGGAGCTAAAGCAAGAAACTACTTTGCATGAACTGGAACCGGTTGCCATCCATGCTCTTCATGAACTTGTTTCTTTAGTTCACAATCATCAATCCACTTCAAGAACTGATTCTGCACTCAATGTCAAGGACAAGGGTAACAAAGTTGTGAGAGTGCATGCATTTAGGTTGGAAGATGACCCAGTTGCTAACATTATTTGGACTCTTCCACCATGCACTCTTCAACGCGTACTTCTTGCCATGGTGTTAAGTAAAAGTTTTCCAAGAACTTTGGAGGCTTTAATATTGCACATGCTTACACTAGTGGAAGCAGAAGTGCTTACACGTAAATTTGAAGAAATGGATGACCTAAACACCAAGGAAGATCGGAACAGATTTTACCAAGTTTTCTATGAATCATTCAACGACCAATTTGCTGCAATGGATGCAATTCTGAATGGAAAGGAATTATTTGCCCTCCAGGCATACAAGAATGTGTTAGATAAGAACATAGGAGTAGATTGGGGTGGGCCAAAACCAGTTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000086 GO:0000278 GO:0003674 GO:0003682 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007049 GO:0008150 GO:0008152 GO:0008214 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016491 GO:0016569 GO:0016570 GO:0016577 GO:0016705 GO:0016706 GO:0019219 GO:0019222 GO:0019538 GO:0022402 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032451 GO:0032452 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044839 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051213 GO:0051252 GO:0051254 GO:0051276 GO:0051864 GO:0055114 GO:0060255 GO:0065007 GO:0070076 GO:0070544 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:1901564 GO:1902680 GO:1903047 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_8

Protein Analysis

421

Amino Acids

48.28

Weight (kDa)

6.02

Isoelectric Point (pI)

51.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_8	PF13621	70 - 139	2.8e-16	Cupin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001794)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26135 AT5G19840 AT5G19840
fragaria_vesca	FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940
malus_domestica	MD03G1258000.v1.1 MD03G1258100.v1.1 MD11G1278700.v1.1
prunus_persica	Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1
pyrus_communis	pycom03g20440 pycom11g24620 pycom11g24630
rosa_chinensis	RchiOBHm_Chr6g0289901 RchiOBHm_Chr6g0289911 RchiOBHm_Chr6g0289951
rosa_laevigata	RLG00000012257
rosa_multiflora	Rmu_sc0001312.1_g000002 Rmu_sc0023926.1_g000002
rosa_roxburghii	Rroxscaffold_7G00177480
rosa_rugosa	Rorug06G0208000
rosa_samantha	Rh6AG319300 Rh6BG326300 Rh6BG326400 Rh6CG332300 Rh6DG318000 Rh6DG318100
rosa_wichuraiana	Rw0G009780 Rw0G009800 Rw6G027540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	581
Acc65I	GGTACC	1 cut(s)	108
AccB1I	GGYRCC	2 cut(s)	108, 178
AccI	GTMKAC	1 cut(s)	144
AccII	CGCG	1 cut(s)	966
AciI	CCGC	1 cut(s)	5
AclWI	GGATC	2 cut(s)	323, 735
AcsI	RAATTY	1 cut(s)	1067
AcuI	CTGAAG	2 cut(s)	375, 504
AfaI	GTAC	3 cut(s)	110, 193, 969
AflIII	ACRYGT	2 cut(s)	964, 1061
AgeI	ACCGGT	1 cut(s)	778
AgsI	TTSAA	6 cut(s)	242, 734, 840, 962, 1073, 1141
AhlI	ACTAGT	1 cut(s)	1039
AjnI	CCWGG	2 cut(s)	8, 1197
AluBI	AGCT	3 cut(s)	308, 679, 745
AluI	AGCT	3 cut(s)	308, 679, 745
AlwI	GGATC	2 cut(s)	323, 735
AoxI	GGCC	3 cut(s)	6, 383, 1247
ApeKI	GCWGC	2 cut(s)	679, 1154
ApoI	RAATTY	1 cut(s)	1067
ArsI	GACNNNNNNTTYG	2 cut(s)	527, 559
AsiGI	ACCGGT	1 cut(s)	778
Asp700I	GAANNNNTTC	2 cut(s)	237, 847
Asp718I	GGTACC	1 cut(s)	108
AspLEI	GCGC	1 cut(s)	582
AspS9I	GGNCC	1 cut(s)	1247
AsuHPI	GGTGA	2 cut(s)	62, 724
BanI	GGYRCC	2 cut(s)	108, 178
BbsI	GAAGAC	1 cut(s)	69
BbvI	GCAGC	2 cut(s)	666, 1141
BccI	CCATC	2 cut(s)	163, 794
BcgI	CGANNNNNNTGC	2 cut(s)	1133, 1167
BciT130I	CCWGG	2 cut(s)	10, 1199
BcuI	ACTAGT	1 cut(s)	1039
BfaI	CTAG	3 cut(s)	62, 309, 1040
BfmI	CTRYAG	1 cut(s)	490
BglI	GCCNNNNNGGC	1 cut(s)	1199
BisI	GCNGC	3 cut(s)	6, 680, 1155
BlsI	GCNGC	3 cut(s)	7, 681, 1156
BmcAI	AGTACT	1 cut(s)	193
Bme1390I	CCNGG	2 cut(s)	10, 1199
BmgT120I	GGNCC	1 cut(s)	1247
BmiI	GGNNCC	3 cut(s)	110, 180, 777
BmrFI	CCNGG	2 cut(s)	10, 1199
BmrI	ACTGGG	1 cut(s)	914
BmsI	GCATC	4 cut(s)	165, 457, 556, 1153
BmuI	ACTGGG	1 cut(s)	914
BpiI	GAAGAC	1 cut(s)	69
BpmI	CTGGAG	1 cut(s)	1181
BpuEI	CTTGAG	1 cut(s)	288
BsaAI	YACGTR	1 cut(s)	1064
BsaJI	CCNNGG	2 cut(s)	978, 1095
BsaWI	WCCGGW	2 cut(s)	400, 778
Bse118I	RCCGGY	1 cut(s)	778
Bse1I	ACTGG	3 cut(s)	777, 920, 1256
Bse3DI	GCAATG	1 cut(s)	1164
BseBI	CCWGG	2 cut(s)	10, 1199
BseDI	CCNNGG	2 cut(s)	978, 1095
BseGI	GGATG	7 cut(s)	174, 297, 472, 571, 786, 1087, 1168
BseMI	GCAATG	1 cut(s)	1164
BseNI	ACTGG	3 cut(s)	777, 920, 1256
BseXI	GCAGC	2 cut(s)	666, 1141
BsgI	GTGCAG	1 cut(s)	837
Bsh1236I	CGCG	1 cut(s)	966
BshFI	GGCC	3 cut(s)	8, 385, 1249
BshNI	GGYRCC	2 cut(s)	108, 178
BshTI	ACCGGT	1 cut(s)	778
BsiSI	CCGG	2 cut(s)	401, 779
BsnI	GGCC	3 cut(s)	8, 385, 1249
Bsp143I	GATC	6 cut(s)	87, 311, 328, 499, 727, 1102
Bsp19I	CCATGG	1 cut(s)	978
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	3 cut(s)	8, 385, 1249
BspFNI	CGCG	1 cut(s)	966
BspHI	TCATGA	2 cut(s)	99, 799
BspLI	GGNNCC	3 cut(s)	110, 180, 777
BspPI	GGATC	2 cut(s)	323, 735
BspQI	GCTCTTC	1 cut(s)	801
BspT107I	GGYRCC	2 cut(s)	108, 178
BsrDI	GCAATG	1 cut(s)	1164
BsrFI	RCCGGY	1 cut(s)	778
BsrI	ACTGG	3 cut(s)	777, 920, 1256
BssAI	RCCGGY	1 cut(s)	778
BssECI	CCNNGG	2 cut(s)	978, 1095
BssMI	GATC	6 cut(s)	87, 311, 328, 499, 727, 1102
BssT1I	CCWWGG	2 cut(s)	978, 1095
Bst2UI	CCWGG	2 cut(s)	10, 1199
Bst4CI	ACNGT	1 cut(s)	604
Bst6I	CTCTTC	4 cut(s)	198, 801, 948, 963
BstAPI	GCANNNNNTGC	2 cut(s)	467, 1163
BstBAI	YACGTR	1 cut(s)	1064
BstC8I	GCNNGC	4 cut(s)	154, 249, 669, 897
BstDEI	CTNAG	2 cut(s)	81, 91
BstDSI	CCRYGG	1 cut(s)	978
BstF5I	GGATG	7 cut(s)	174, 297, 472, 571, 786, 1087, 1168
BstFNI	CGCG	1 cut(s)	966
BstHHI	GCGC	1 cut(s)	582
BstKTI	GATC	6 cut(s)	90, 314, 331, 502, 730, 1105
BstMBI	GATC	6 cut(s)	87, 311, 328, 499, 727, 1102
BstMWI	GCNNNNNNNGC	4 cut(s)	467, 791, 1163, 1199
BstNI	CCWGG	2 cut(s)	10, 1199
BstNSI	RCATGY	6 cut(s)	156, 553, 671, 675, 899, 1033
BstSCI	CCNGG	2 cut(s)	8, 1197
BstSFI	CTRYAG	1 cut(s)	490
BstUI	CGCG	1 cut(s)	966
BstV1I	GCAGC	2 cut(s)	666, 1141
BstV2I	GAAGAC	1 cut(s)	69
BstX2I	RGATCY	1 cut(s)	727
BstYI	RGATCY	1 cut(s)	727
BsuRI	GGCC	3 cut(s)	8, 385, 1249
BtgI	CCRYGG	1 cut(s)	978
BtsCI	GGATG	7 cut(s)	174, 297, 472, 571, 786, 1087, 1168
BtsI	GCAGTG	1 cut(s)	112
BtsIMutI	CAGTG	1 cut(s)	112
Cac8I	GCNNGC	4 cut(s)	154, 249, 669, 897
CciI	TCATGA	2 cut(s)	99, 799
CfoI	GCGC	1 cut(s)	582
Cfr10I	RCCGGY	1 cut(s)	778
Cfr13I	GGNCC	1 cut(s)	1247
CseI	GACGC	1 cut(s)	624
Csp6I	GTAC	3 cut(s)	109, 192, 968
CspAI	ACCGGT	1 cut(s)	778
CviQI	GTAC	3 cut(s)	109, 192, 968
DdeI	CTNAG	2 cut(s)	81, 91
DpnI	GATC	6 cut(s)	89, 313, 330, 501, 729, 1104
DpnII	GATC	6 cut(s)	87, 311, 328, 499, 727, 1102
Eam1104I	CTCTTC	4 cut(s)	198, 801, 948, 963
EarI	CTCTTC	4 cut(s)	198, 801, 948, 963
Eco130I	CCWWGG	2 cut(s)	978, 1095
Eco57I	CTGAAG	2 cut(s)	375, 504
EcoRII	CCWGG	2 cut(s)	8, 1197
EcoT14I	CCWWGG	2 cut(s)	978, 1095
EcoT22I	ATGCAT	5 cut(s)	158, 463, 571, 673, 901
ErhI	CCWWGG	2 cut(s)	978, 1095
FalI	AAGNNNNNCTT	2 cut(s)	74, 106
FblI	GTMKAC	1 cut(s)	144
Fnu4HI	GCNGC	3 cut(s)	6, 680, 1155
FokI	GGATG	7 cut(s)	181, 304, 479, 578, 773, 1094, 1175
Fsp4HI	GCNGC	3 cut(s)	6, 680, 1155
FspBI	CTAG	3 cut(s)	62, 309, 1040
FspI	TGCGCA	1 cut(s)	581
GlaI	GCGC	1 cut(s)	581
GluI	GCNGC	3 cut(s)	6, 680, 1155
GsuI	CTGGAG	1 cut(s)	1181
HaeIII	GGCC	3 cut(s)	8, 385, 1249
HapII	CCGG	2 cut(s)	401, 779
HgaI	GACGC	1 cut(s)	624
HhaI	GCGC	1 cut(s)	582
Hin6I	GCGC	1 cut(s)	580
HinP1I	GCGC	1 cut(s)	580
HincII	GTYRAC	2 cut(s)	283, 517
HindII	GTYRAC	2 cut(s)	283, 517
HinfI	GANTC	4 cut(s)	29, 848, 940, 1133
HpaII	CCGG	2 cut(s)	401, 779
HphI	GGTGA	2 cut(s)	62, 724
Hpy166II	GTNNAC	5 cut(s)	145, 283, 368, 517, 820
Hpy188I	TCNGA	5 cut(s)	34, 504, 556, 1107, 1173
Hpy188III	TCNNGA	7 cut(s)	100, 289, 482, 608, 731, 800, 840
Hpy8I	GTNNAC	5 cut(s)	145, 283, 368, 517, 820
HpyAV	CCTTC	7 cut(s)	138, 353, 399, 439, 479, 718, 728
HpyCH4III	ACNGT	1 cut(s)	604
HpyCH4IV	ACGT	1 cut(s)	1063
HpyF10VI	GCNNNNNNNGC	4 cut(s)	467, 791, 1163, 1199
HpyF3I	CTNAG	2 cut(s)	81, 91
HpySE526I	ACGT	1 cut(s)	1063
HspAI	GCGC	1 cut(s)	580
KpnI	GGTACC	1 cut(s)	112
Kzo9I	GATC	6 cut(s)	87, 311, 328, 499, 727, 1102
LguI	GCTCTTC	1 cut(s)	801
LmnI	GCTCC	1 cut(s)	742
Lsp1109I	GCAGC	2 cut(s)	666, 1141
LweI	GCATC	4 cut(s)	165, 457, 556, 1153
MaeI	CTAG	3 cut(s)	62, 309, 1040
MaeII	ACGT	1 cut(s)	1063
MaeIII	GTNAC	1 cut(s)	875
MalI	GATC	6 cut(s)	89, 313, 330, 501, 729, 1104
MboI	GATC	6 cut(s)	87, 311, 328, 499, 727, 1102
MflI	RGATCY	1 cut(s)	727
MluCI	AATT	6 cut(s)	186, 273, 1067, 1148, 1167, 1184
MluI	ACGCGT	1 cut(s)	964
MlyI	GAGTC	2 cut(s)	38, 934
MmeI	TCCRAC	3 cut(s)	12, 198, 888
Mph1103I	ATGCAT	5 cut(s)	158, 463, 571, 673, 901
MroXI	GAANNNNTTC	2 cut(s)	237, 847
MseI	TTAA	4 cut(s)	590, 684, 986, 1019
MslI	CAYNNNNRTG	1 cut(s)	564
MspI	CCGG	2 cut(s)	401, 779
MspR9I	CCNGG	2 cut(s)	10, 1199
MvaI	CCWGG	2 cut(s)	10, 1199
MvnI	CGCG	1 cut(s)	966
MwoI	GCNNNNNNNGC	4 cut(s)	467, 791, 1163, 1199
NcoI	CCATGG	1 cut(s)	978
NdeII	GATC	6 cut(s)	87, 311, 328, 499, 727, 1102
NlaIV	GGNNCC	3 cut(s)	110, 180, 777
NsbI	TGCGCA	1 cut(s)	581
NsiI	ATGCAT	5 cut(s)	158, 463, 571, 673, 901
NspI	RCATGY	6 cut(s)	156, 553, 671, 675, 899, 1033
PaeI	GCATGC	3 cut(s)	156, 671, 899
PagI	TCATGA	2 cut(s)	99, 799
PciSI	GCTCTTC	1 cut(s)	801
PdmI	GAANNNNTTC	2 cut(s)	237, 847
PfeI	GAWTC	2 cut(s)	848, 1133
PinAI	ACCGGT	1 cut(s)	778
PkrI	GCNGC	3 cut(s)	7, 681, 1156
PleI	GAGTC	2 cut(s)	37, 934
PpsI	GAGTC	2 cut(s)	37, 934
Ppu21I	YACGTR	1 cut(s)	1064
Psp6I	CCWGG	2 cut(s)	8, 1197
PspGI	CCWGG	2 cut(s)	8, 1197
PspN4I	GGNNCC	3 cut(s)	110, 180, 777
PspPI	GGNCC	1 cut(s)	1247
PsrI	GAACNNNNNNTAC	2 cut(s)	1100, 1132
PsuI	RGATCY	1 cut(s)	727
RsaI	GTAC	3 cut(s)	110, 193, 969
RsaNI	GTAC	3 cut(s)	109, 192, 968
RseI	CAYNNNNRTG	1 cut(s)	564
SapI	GCTCTTC	1 cut(s)	801
SaqAI	TTAA	4 cut(s)	590, 684, 986, 1019
SatI	GCNGC	3 cut(s)	6, 680, 1155
Sau3AI	GATC	6 cut(s)	87, 311, 328, 499, 727, 1102
Sau96I	GGNCC	1 cut(s)	1247
ScaI	AGTACT	1 cut(s)	193
SchI	GAGTC	2 cut(s)	38, 934
ScrFI	CCNGG	2 cut(s)	10, 1199
SfaNI	GCATC	4 cut(s)	165, 457, 556, 1153
SfcI	CTRYAG	1 cut(s)	490
SmiMI	CAYNNNNRTG	1 cut(s)	564
SmlI	CTYRAG	1 cut(s)	303
SmoI	CTYRAG	1 cut(s)	303
SpeI	ACTAGT	1 cut(s)	1039
SphI	GCATGC	3 cut(s)	156, 671, 899
Sse9I	AATT	6 cut(s)	186, 273, 1067, 1148, 1167, 1184
SsiI	CCGC	1 cut(s)	5
SspI	AATATT	2 cut(s)	16, 1023
SspMI	CTAG	3 cut(s)	62, 309, 1040
StyD4I	CCNGG	2 cut(s)	8, 1197
StyI	CCWWGG	2 cut(s)	978, 1095
TaaI	ACNGT	1 cut(s)	604
TaiI	ACGT	1 cut(s)	1066
TaqI	TCGA	1 cut(s)	607
TasI	AATT	6 cut(s)	186, 273, 1067, 1148, 1167, 1184
TatI	WGTACW	1 cut(s)	191
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	2 cut(s)	848, 1133
Tru1I	TTAA	4 cut(s)	590, 684, 986, 1019
Tru9I	TTAA	4 cut(s)	590, 684, 986, 1019
TscAI	CASTG	1 cut(s)	119
TseI	GCWGC	2 cut(s)	679, 1154
TspDTI	ATGAA	8 cut(s)	120, 216, 308, 629, 783, 788, 816, 1146
TspGWI	ACGGA	1 cut(s)	705
TspRI	CASTG	1 cut(s)	119
XapI	RAATTY	1 cut(s)	1067
XceI	RCATGY	6 cut(s)	156, 553, 671, 675, 899, 1033
XmiI	GTMKAC	1 cut(s)	144
XmnI	GAANNNNTTC	2 cut(s)	237, 847
XspI	CTAG	3 cut(s)	62, 309, 1040
ZrmI	AGTACT	1 cut(s)	193
Zsp2I	ATGCAT	5 cut(s)	158, 463, 571, 673, 901

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.