Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001794

Physical Location & Seq

Genomic Coordinates Forward (+)

52022542 .. 52025668

Gene Structure 3127 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG318000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGGAGGAGTCTCTGCGAATTCGAAGATTGGAGGAAGTTCCTCCGGCCAAAGACTTCACCGCTCGGATTGAATCCAGGAATATTCCGGCGGAACGAGTCGGATTGTGTGTTGTGGAGGCTATGCTATCTAGTTTCGCACCTGTCTTCTACGGCGATCTTAGAAGTCATGAGAGGGTACCACTGCCATTTTCTGCCTTCATTCGTCTATGTAGACTACGCATGCATCATGCAGAGGATGGTTCTGGTGCTTATTCTGAATCGGAACGGACTGGGCTGCTAGGGCCTGAATCTGAGCATGACTGTAAGCCCTATGAGGATGCTCCTCAACAAATCTATTTAGCACAGGTACCGATAATCAGTACTGAAAATGAAGAGAGGGTTCAGTTGGAAACTTTGAGGGAAGATATTCAAATGCCTGCATTTTTGGAGGATAAATCACTAATTTCTGTCAACCTCTGGATGAACAATGCTCAAGCTAGATCAAGCACTCACTATGATCCACACCATAACCTTCTCTGCATAGTTTCTGGCTGTAAACAAGTGGTTTTATGGCCTCCTTCAGCAACTCTGGTGTTATACCCTATGCCAATATATGGGGAGGCATCAAATCATAGTTCTGTTCCTTTAGACAACCTTGACTTTTCAAATTATCCAAGAGCAGAATCTTCAATGGAGTACTCGCAGAAGGTTATTCTTCATGCAGGGGATGCACTATTTATTCCTGAAGGCTGGTTCCACCAGGTGGATAGTGATGATCTGACAATCGCTGTCAACTTTTGGTGGCAATCAAACATAATGTCAAGCATGTCAGAACACATGGATGCATATTATTTGCGCATACTATTAAGAAGAAGTTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000086 GO:0000278 GO:0003674 GO:0003682 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007049 GO:0008150 GO:0008152 GO:0008214 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016491 GO:0016569 GO:0016570 GO:0016577 GO:0016705 GO:0016706 GO:0019219 GO:0019222 GO:0019538 GO:0022402 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032451 GO:0032452 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044839 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051213 GO:0051252 GO:0051254 GO:0051276 GO:0051864 GO:0055114 GO:0060255 GO:0065007 GO:0070076 GO:0070544 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:1901564 GO:1902680 GO:1903047 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_8

Protein Analysis

286

Amino Acids

32.7

Weight (kDa)

5.07

Isoelectric Point (pI)

71.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_8	PF13621	121 - 264	5.9e-43	Cupin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001794)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26135 AT5G19840 AT5G19840
fragaria_vesca	FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940
malus_domestica	MD03G1258000.v1.1 MD03G1258100.v1.1 MD11G1278700.v1.1
prunus_persica	Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1
pyrus_communis	pycom03g20440 pycom11g24620 pycom11g24630
rosa_chinensis	RchiOBHm_Chr6g0289901 RchiOBHm_Chr6g0289911 RchiOBHm_Chr6g0289951
rosa_laevigata	RLG00000012257
rosa_multiflora	Rmu_sc0001312.1_g000002 Rmu_sc0023926.1_g000002
rosa_roxburghii	Rroxscaffold_7G00177480
rosa_rugosa	Rorug06G0208000
rosa_samantha	Rh6AG319300 Rh6BG326300 Rh6BG326400 Rh6CG332300 Rh6DG318000 Rh6DG318100
rosa_wichuraiana	Rw0G009780 Rw0G009800 Rw6G027540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	859
Acc16I	TGCGCA	1 cut(s)	836
Acc65I	GGTACC	2 cut(s)	175, 346
AccB1I	GGYRCC	2 cut(s)	175, 346
AccB7I	CCANNNNNTGG	2 cut(s)	593, 742
AccBSI	CCGCTC	1 cut(s)	62
AccI	GTMKAC	1 cut(s)	211
AciI	CCGC	2 cut(s)	60, 89
AclWI	GGATC	1 cut(s)	491
AcoI	YGGCCR	1 cut(s)	45
AcsI	RAATTY	1 cut(s)	18
AcuI	CTGAAG	2 cut(s)	543, 744
AdeI	CACNNNGTG	1 cut(s)	742
AfaI	GTAC	4 cut(s)	177, 348, 361, 677
AfiI	CCNNNNNNNGG	2 cut(s)	593, 742
AgsI	TTSAA	4 cut(s)	71, 410, 645, 669
AjnI	CCWGG	2 cut(s)	74, 738
AluBI	AGCT	1 cut(s)	476
AluI	AGCT	1 cut(s)	476
Alw26I	GTCTC	1 cut(s)	15
AlwI	GGATC	1 cut(s)	491
AoxI	GGCC	3 cut(s)	45, 281, 551
ApeKI	GCWGC	1 cut(s)	274
ApoI	RAATTY	1 cut(s)	18
ArsI	GACNNNNNNTTYG	2 cut(s)	782, 814
Asp700I	GAANNNNTTC	1 cut(s)	405
Asp718I	GGTACC	2 cut(s)	175, 346
AspLEI	GCGC	1 cut(s)	837
AspS9I	GGNCC	1 cut(s)	281
AsuHPI	GGTGA	1 cut(s)	49
AsuII	TTCGAA	1 cut(s)	22
BanI	GGYRCC	2 cut(s)	175, 346
BbsI	GAAGAC	1 cut(s)	136
BbvI	GCAGC	1 cut(s)	261
BccI	CCATC	1 cut(s)	230
BceAI	ACGGC	1 cut(s)	166
BciT130I	CCWGG	2 cut(s)	76, 740
BcoDI	GTCTC	1 cut(s)	15
BfaI	CTAG	3 cut(s)	129, 278, 477
BisI	GCNGC	1 cut(s)	275
BlsI	GCNGC	1 cut(s)	276
BmcAI	AGTACT	2 cut(s)	361, 677
Bme1390I	CCNGG	2 cut(s)	76, 740
BmgT120I	GGNCC	1 cut(s)	281
BmiI	GGNNCC	3 cut(s)	177, 348, 734
BmrFI	CCNGG	2 cut(s)	76, 740
BmrI	ACTGGG	1 cut(s)	279
BmsI	GCATC	5 cut(s)	232, 307, 611, 697, 811
BmuI	ACTGGG	1 cut(s)	279
BpiI	GAAGAC	1 cut(s)	136
Bpu14I	TTCGAA	1 cut(s)	22
BpuEI	CTTGAG	1 cut(s)	456
Bsc4I	CCNNNNNNNGG	2 cut(s)	593, 742
Bse1I	ACTGG	1 cut(s)	274
BseBI	CCWGG	2 cut(s)	76, 740
BseGI	GGATG	5 cut(s)	241, 322, 465, 712, 826
BseLI	CCNNNNNNNGG	2 cut(s)	593, 742
BseMII	CTCAG	1 cut(s)	282
BseNI	ACTGG	1 cut(s)	274
BseRI	GAGGAG	2 cut(s)	20, 312
BseXI	GCAGC	1 cut(s)	261
BshFI	GGCC	3 cut(s)	47, 283, 553
BshNI	GGYRCC	2 cut(s)	175, 346
BsiSI	CCGG	2 cut(s)	44, 86
BslI	CCNNNNNNNGG	2 cut(s)	593, 742
BsmAI	GTCTC	1 cut(s)	15
BsnI	GGCC	3 cut(s)	47, 283, 553
Bsp119I	TTCGAA	1 cut(s)	22
Bsp143I	GATC	4 cut(s)	154, 479, 496, 754
BspACI	CCGC	2 cut(s)	60, 89
BspANI	GGCC	3 cut(s)	47, 283, 553
BspCNI	CTCAG	1 cut(s)	283
BspHI	TCATGA	1 cut(s)	166
BspLI	GGNNCC	3 cut(s)	177, 348, 734
BspPI	GGATC	1 cut(s)	491
BspT104I	TTCGAA	1 cut(s)	22
BspT107I	GGYRCC	2 cut(s)	175, 346
BsrBI	CCGCTC	1 cut(s)	62
BsrI	ACTGG	1 cut(s)	274
BssMI	GATC	4 cut(s)	154, 479, 496, 754
Bst2UI	CCWGG	2 cut(s)	76, 740
Bst4CI	ACNGT	1 cut(s)	302
Bst6I	CTCTTC	1 cut(s)	366
BstAPI	GCANNNNNTGC	1 cut(s)	707
BstBI	TTCGAA	1 cut(s)	22
BstC8I	GCNNGC	2 cut(s)	221, 417
BstDEI	CTNAG	2 cut(s)	158, 291
BstF5I	GGATG	5 cut(s)	241, 322, 465, 712, 826
BstHHI	GCGC	1 cut(s)	837
BstKTI	GATC	4 cut(s)	157, 482, 499, 757
BstMAI	GTCTC	1 cut(s)	15
BstMBI	GATC	4 cut(s)	154, 479, 496, 754
BstMWI	GCNNNNNNNGC	2 cut(s)	280, 707
BstNI	CCWGG	2 cut(s)	76, 740
BstNSI	RCATGY	2 cut(s)	223, 808
BstSCI	CCNGG	2 cut(s)	74, 738
BstV1I	GCAGC	1 cut(s)	261
BstV2I	GAAGAC	1 cut(s)	136
BsuRI	GGCC	3 cut(s)	47, 283, 553
BtsCI	GGATG	5 cut(s)	241, 322, 465, 712, 826
BtsI	GCAGTG	1 cut(s)	179
BtsIMutI	CAGTG	1 cut(s)	179
Cac8I	GCNNGC	2 cut(s)	221, 417
CciI	TCATGA	1 cut(s)	166
CfoI	GCGC	1 cut(s)	837
Cfr13I	GGNCC	1 cut(s)	281
CsiI	ACCWGGT	1 cut(s)	738
Csp6I	GTAC	4 cut(s)	176, 347, 360, 676
CviAII	CATG	7 cut(s)	167, 220, 227, 296, 698, 805, 817
CviJI	RGCY	9 cut(s)	47, 119, 274, 283, 307, 476, 531, 553, 729
CviKI_1	RGCY	9 cut(s)	47, 119, 274, 283, 307, 476, 531, 553, 729
CviQI	GTAC	4 cut(s)	176, 347, 360, 676
DdeI	CTNAG	2 cut(s)	158, 291
DpnI	GATC	4 cut(s)	156, 481, 498, 756
DpnII	GATC	4 cut(s)	154, 479, 496, 754
DraIII	CACNNNGTG	1 cut(s)	742
EaeI	YGGCCR	1 cut(s)	45
Eam1104I	CTCTTC	1 cut(s)	366
EarI	CTCTTC	1 cut(s)	366
EciI	GGCGGA	1 cut(s)	104
Eco57I	CTGAAG	2 cut(s)	543, 744
EcoO109I	RGGNCCY	1 cut(s)	281
EcoRI	GAATTC	1 cut(s)	18
EcoRII	CCWGG	2 cut(s)	74, 738
EcoT22I	ATGCAT	2 cut(s)	225, 826
FaeI	CATG	7 cut(s)	170, 223, 230, 299, 701, 808, 820
FatI	CATG	7 cut(s)	166, 219, 226, 295, 697, 804, 816
FblI	GTMKAC	1 cut(s)	211
Fnu4HI	GCNGC	1 cut(s)	275
FokI	GGATG	5 cut(s)	248, 329, 472, 719, 833
Fsp4HI	GCNGC	1 cut(s)	275
FspBI	CTAG	3 cut(s)	129, 278, 477
FspI	TGCGCA	1 cut(s)	836
GlaI	GCGC	1 cut(s)	836
GluI	GCNGC	1 cut(s)	275
HaeIII	GGCC	3 cut(s)	47, 283, 553
HapII	CCGG	2 cut(s)	44, 86
HhaI	GCGC	1 cut(s)	837
Hin1II	CATG	7 cut(s)	170, 223, 230, 299, 701, 808, 820
Hin6I	GCGC	1 cut(s)	835
HinP1I	GCGC	1 cut(s)	835
HincII	GTYRAC	2 cut(s)	451, 772
HindII	GTYRAC	2 cut(s)	451, 772
HinfI	GANTC	6 cut(s)	8, 71, 96, 257, 287, 662
HpaII	CCGG	2 cut(s)	44, 86
HphI	GGTGA	1 cut(s)	49
Hpy166II	GTNNAC	4 cut(s)	212, 451, 536, 772
Hpy188I	TCNGA	7 cut(s)	66, 101, 256, 262, 292, 759, 811
Hpy188III	TCNNGA	3 cut(s)	167, 457, 722
Hpy8I	GTNNAC	4 cut(s)	212, 451, 536, 772
HpyAV	CCTTC	5 cut(s)	205, 521, 567, 679, 719
HpyCH4III	ACNGT	1 cut(s)	302
HpyCH4V	TGCA	7 cut(s)	223, 230, 419, 519, 701, 710, 824
HpyF10VI	GCNNNNNNNGC	2 cut(s)	280, 707
HpyF3I	CTNAG	2 cut(s)	158, 291
Hsp92II	CATG	7 cut(s)	170, 223, 230, 299, 701, 808, 820
HspAI	GCGC	1 cut(s)	835
KpnI	GGTACC	2 cut(s)	179, 350
Kzo9I	GATC	4 cut(s)	154, 479, 496, 754
LmnI	GCTCC	1 cut(s)	325
Lsp1109I	GCAGC	1 cut(s)	261
LweI	GCATC	5 cut(s)	232, 307, 611, 697, 811
MabI	ACCWGGT	1 cut(s)	738
MaeI	CTAG	3 cut(s)	129, 278, 477
MalI	GATC	4 cut(s)	156, 481, 498, 756
MbiI	CCGCTC	1 cut(s)	62
MboI	GATC	4 cut(s)	154, 479, 496, 754
MboII	GAAGA	7 cut(s)	36, 136, 383, 413, 657, 686, 861
MluCI	AATT	3 cut(s)	18, 441, 646
MlyI	GAGTC	2 cut(s)	17, 105
MmeI	TCCRAC	2 cut(s)	79, 366
Mph1103I	ATGCAT	2 cut(s)	225, 826
MroXI	GAANNNNTTC	1 cut(s)	405
MseI	TTAA	1 cut(s)	845
MslI	CAYNNNNRTG	1 cut(s)	819
MspI	CCGG	2 cut(s)	44, 86
MspR9I	CCNGG	2 cut(s)	76, 740
MvaI	CCWGG	2 cut(s)	76, 740
MwoI	GCNNNNNNNGC	2 cut(s)	280, 707
NdeII	GATC	4 cut(s)	154, 479, 496, 754
NlaIII	CATG	7 cut(s)	170, 223, 230, 299, 701, 808, 820
NlaIV	GGNNCC	3 cut(s)	177, 348, 734
NsbI	TGCGCA	1 cut(s)	836
NsiI	ATGCAT	2 cut(s)	225, 826
NspI	RCATGY	2 cut(s)	223, 808
NspV	TTCGAA	1 cut(s)	22
PaeI	GCATGC	1 cut(s)	223
PagI	TCATGA	1 cut(s)	166
PdmI	GAANNNNTTC	1 cut(s)	405
PfeI	GAWTC	4 cut(s)	71, 257, 287, 662
PflMI	CCANNNNNTGG	2 cut(s)	593, 742
PfoI	TCCNGGA	1 cut(s)	74
PkrI	GCNGC	1 cut(s)	276
PleI	GAGTC	2 cut(s)	16, 104
PpsI	GAGTC	2 cut(s)	16, 104
PsiI	TTATAA	1 cut(s)	859
Psp6I	CCWGG	2 cut(s)	74, 738
PspGI	CCWGG	2 cut(s)	74, 738
PspN4I	GGNNCC	3 cut(s)	177, 348, 734
PspPI	GGNCC	1 cut(s)	281
RsaI	GTAC	4 cut(s)	177, 348, 361, 677
RsaNI	GTAC	4 cut(s)	176, 347, 360, 676
RseI	CAYNNNNRTG	1 cut(s)	819
SaqAI	TTAA	1 cut(s)	845
SatI	GCNGC	1 cut(s)	275
Sau3AI	GATC	4 cut(s)	154, 479, 496, 754
Sau96I	GGNCC	1 cut(s)	281
ScaI	AGTACT	2 cut(s)	361, 677
SchI	GAGTC	2 cut(s)	17, 105
ScrFI	CCNGG	2 cut(s)	76, 740
SetI	ASST	8 cut(s)	142, 348, 456, 478, 513, 636, 690, 744
SexAI	ACCWGGT	1 cut(s)	738
SfaNI	GCATC	5 cut(s)	232, 307, 611, 697, 811
SfuI	TTCGAA	1 cut(s)	22
SmiMI	CAYNNNNRTG	1 cut(s)	819
SmlI	CTYRAG	1 cut(s)	471
SmoI	CTYRAG	1 cut(s)	471
SphI	GCATGC	1 cut(s)	223
Sse9I	AATT	3 cut(s)	18, 441, 646
SsiI	CCGC	2 cut(s)	60, 89
SspI	AATATT	1 cut(s)	82
SspMI	CTAG	3 cut(s)	129, 278, 477
StyD4I	CCNGG	2 cut(s)	74, 738
TaaI	ACNGT	1 cut(s)	302
TaqI	TCGA	1 cut(s)	22
TasI	AATT	3 cut(s)	18, 441, 646
TatI	WGTACW	2 cut(s)	359, 675
TfiI	GAWTC	4 cut(s)	71, 257, 287, 662
Tru1I	TTAA	1 cut(s)	845
Tru9I	TTAA	1 cut(s)	845
TscAI	CASTG	1 cut(s)	186
TseI	GCWGC	1 cut(s)	274
TspDTI	ATGAA	4 cut(s)	187, 384, 476, 686
TspGWI	ACGGA	1 cut(s)	280
TspRI	CASTG	1 cut(s)	186
Van91I	CCANNNNNTGG	2 cut(s)	593, 742
XapI	RAATTY	1 cut(s)	18
XceI	RCATGY	2 cut(s)	223, 808
XmiI	GTMKAC	1 cut(s)	211
XmnI	GAANNNNTTC	1 cut(s)	405
XspI	CTAG	3 cut(s)	129, 278, 477
ZrmI	AGTACT	2 cut(s)	361, 677
Zsp2I	ATGCAT	2 cut(s)	225, 826

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.