Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001794

Physical Location & Seq

Genomic Coordinates Forward (+)

55834563 .. 55837101

Gene Structure 2539 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG326300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGGAGGAGTCTCTGCGAATTCGAAGATTGGAGGAAGTTCCTCCGGCCAAAGACTTCACCGCTCGGATTGAATCCAGGAATATTCCGGCGGTTATCAAGGGCTGCGTTAAAGATTGGGAAGCTGTTTCCAAGTGGAATCCATCGAATGGCGGCCTGGAATATTTGCAGGAACGAGTCGGATTGTGTGTTGTGGAGGCTATGCTATCTAGTTTCGCACCTGTCTTCTACGGCGATCTTAGAAGTCATGAGAGGGTACCACTGCCATTTTCTGCCTTCATTCGTCTATGTAGACTACGCATGCATCATGCAGAGGATGGTTCTGGTGCTTATTCTGAATCGGAACGGACTGGGCTGCTAGGGCCTGAATCTGAGCATGACTGTAAGCCCTATGAGGATGCTCCTCAACAAATCTATTTAGCACAGGTACCGATAATCAGTACTGAAAATGAAGAGAGGGTTCAGTTGGAAACTTTGAGGGAAGATATTCAAATGCCTGCATTTTTGGAGGATAAATCACTAATTTCTGTCAACCTCTGGATGAACAATGCTCAAGCTAGATCAAGCACTCACTATGATCCACACCATAACCTTCTCTGCATAGTTTCTGGCTGTAAACAAGTGGTTTTATGGCCTCCTTCAGCAACTCTGGTGTTATACCCTATGCCAATATATGGGGAGGCATCAAATCATAGTTCTGTTCCTTTAGACAACCTTGACTTTTCAAATTATCCAAGAGCAGAATCTTCAATGGAGTACTCGCAGAAGGTTATTCTTCATGCAGGGGATGCACTATTTATTCCTGAAGGATGGTTCCACCAGGTGGATAGTGATGATCTGACAATCGCTGTCAACTTTTGGTGGCAATCAAACATAATGTCAAGCATGTCAGAACACATGGATGCATATTATTTGCGCATACTATTAAGAAGAATGACAGTTCGAGAAATGGTATCCTCTCTCTCTCTCTCTCTCACACACACACACACACACAGAGACACATCTGGTGTGTGTCTATTTAGTGAAATCTATGGCAAAGCCAATTCTTACATCTGTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000086 GO:0000278 GO:0003674 GO:0003682 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007049 GO:0008150 GO:0008152 GO:0008214 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016491 GO:0016569 GO:0016570 GO:0016577 GO:0016705 GO:0016706 GO:0019219 GO:0019222 GO:0019538 GO:0022402 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032451 GO:0032452 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044839 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051213 GO:0051252 GO:0051254 GO:0051276 GO:0051864 GO:0055114 GO:0060255 GO:0065007 GO:0070076 GO:0070544 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:1901564 GO:1902680 GO:1903047 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_8

Protein Analysis

352

Amino Acids

40.1

Weight (kDa)

5.36

Isoelectric Point (pI)

62.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_8	PF13621	18 - 290	2.6e-52	Cupin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001794)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26135 AT5G19840 AT5G19840
fragaria_vesca	FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940
malus_domestica	MD03G1258000.v1.1 MD03G1258100.v1.1 MD11G1278700.v1.1
prunus_persica	Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1
pyrus_communis	pycom03g20440 pycom11g24620 pycom11g24630
rosa_chinensis	RchiOBHm_Chr6g0289901 RchiOBHm_Chr6g0289911 RchiOBHm_Chr6g0289951
rosa_laevigata	RLG00000012257
rosa_multiflora	Rmu_sc0001312.1_g000002 Rmu_sc0023926.1_g000002
rosa_roxburghii	Rroxscaffold_7G00177480
rosa_rugosa	Rorug06G0208000
rosa_samantha	Rh6AG319300 Rh6BG326300 Rh6BG326400 Rh6CG332300 Rh6DG318000 Rh6DG318100
rosa_wichuraiana	Rw0G009780 Rw0G009800 Rw6G027540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	914
Acc65I	GGTACC	2 cut(s)	253, 424
AccB1I	GGYRCC	2 cut(s)	253, 424
AccB7I	CCANNNNNTGG	3 cut(s)	146, 671, 820
AccBSI	CCGCTC	1 cut(s)	62
AccI	GTMKAC	1 cut(s)	289
AciI	CCGC	3 cut(s)	60, 89, 150
AclWI	GGATC	1 cut(s)	569
AcoI	YGGCCR	1 cut(s)	45
AcsI	RAATTY	1 cut(s)	18
AcuI	CTGAAG	2 cut(s)	621, 822
AdeI	CACNNNGTG	1 cut(s)	820
AfaI	GTAC	4 cut(s)	255, 426, 439, 755
AfiI	CCNNNNNNNGG	3 cut(s)	146, 671, 820
AgsI	TTSAA	4 cut(s)	71, 488, 723, 747
AjnI	CCWGG	3 cut(s)	74, 153, 816
AluBI	AGCT	2 cut(s)	122, 554
AluI	AGCT	2 cut(s)	122, 554
Alw26I	GTCTC	2 cut(s)	15, 987
AlwI	GGATC	1 cut(s)	569
AoxI	GGCC	4 cut(s)	45, 151, 359, 629
ApeKI	GCWGC	2 cut(s)	102, 352
ApoI	RAATTY	1 cut(s)	18
ArsI	GACNNNNNNTTYG	2 cut(s)	860, 892
Asp700I	GAANNNNTTC	1 cut(s)	483
Asp718I	GGTACC	2 cut(s)	253, 424
AspLEI	GCGC	1 cut(s)	915
AspS9I	GGNCC	1 cut(s)	359
AsuHPI	GGTGA	1 cut(s)	49
AsuII	TTCGAA	1 cut(s)	22
BanI	GGYRCC	2 cut(s)	253, 424
BbsI	GAAGAC	1 cut(s)	214
BbvI	GCAGC	2 cut(s)	89, 339
BccI	CCATC	3 cut(s)	148, 308, 801
BceAI	ACGGC	1 cut(s)	244
BciT130I	CCWGG	3 cut(s)	76, 155, 818
BciVI	GTATCC	1 cut(s)	961
BcoDI	GTCTC	2 cut(s)	15, 987
BfaI	CTAG	3 cut(s)	207, 356, 555
BfuI	GTATCC	1 cut(s)	961
BisI	GCNGC	3 cut(s)	103, 151, 353
BlsI	GCNGC	3 cut(s)	104, 152, 354
BmcAI	AGTACT	2 cut(s)	439, 755
Bme1390I	CCNGG	3 cut(s)	76, 155, 818
BmgT120I	GGNCC	1 cut(s)	359
BmiI	GGNNCC	3 cut(s)	255, 426, 812
BmrFI	CCNGG	3 cut(s)	76, 155, 818
BmrI	ACTGGG	1 cut(s)	357
BmsI	GCATC	5 cut(s)	310, 385, 689, 775, 889
BmuI	ACTGGG	1 cut(s)	357
BpiI	GAAGAC	1 cut(s)	214
Bpu14I	TTCGAA	1 cut(s)	22
BpuEI	CTTGAG	1 cut(s)	534
Bsc4I	CCNNNNNNNGG	3 cut(s)	146, 671, 820
Bse1I	ACTGG	1 cut(s)	352
BseBI	CCWGG	3 cut(s)	76, 155, 818
BseGI	GGATG	6 cut(s)	319, 400, 543, 790, 812, 904
BseLI	CCNNNNNNNGG	3 cut(s)	146, 671, 820
BseMII	CTCAG	1 cut(s)	360
BseNI	ACTGG	1 cut(s)	352
BseRI	GAGGAG	2 cut(s)	20, 390
BseXI	GCAGC	2 cut(s)	89, 339
BshFI	GGCC	4 cut(s)	47, 153, 361, 631
BshNI	GGYRCC	2 cut(s)	253, 424
BsiSI	CCGG	2 cut(s)	44, 86
BslI	CCNNNNNNNGG	3 cut(s)	146, 671, 820
BsmAI	GTCTC	2 cut(s)	15, 987
BsnI	GGCC	4 cut(s)	47, 153, 361, 631
Bsp119I	TTCGAA	1 cut(s)	22
Bsp143I	GATC	4 cut(s)	232, 557, 574, 832
BspACI	CCGC	3 cut(s)	60, 89, 150
BspANI	GGCC	4 cut(s)	47, 153, 361, 631
BspCNI	CTCAG	1 cut(s)	361
BspHI	TCATGA	1 cut(s)	244
BspLI	GGNNCC	3 cut(s)	255, 426, 812
BspPI	GGATC	1 cut(s)	569
BspT104I	TTCGAA	1 cut(s)	22
BspT107I	GGYRCC	2 cut(s)	253, 424
BsrBI	CCGCTC	1 cut(s)	62
BsrI	ACTGG	1 cut(s)	352
BssMI	GATC	4 cut(s)	232, 557, 574, 832
Bst2UI	CCWGG	3 cut(s)	76, 155, 818
Bst4CI	ACNGT	2 cut(s)	380, 937
Bst6I	CTCTTC	1 cut(s)	444
BstAPI	GCANNNNNTGC	1 cut(s)	785
BstBI	TTCGAA	1 cut(s)	22
BstC8I	GCNNGC	2 cut(s)	299, 495
BstDEI	CTNAG	2 cut(s)	236, 369
BstF5I	GGATG	6 cut(s)	319, 400, 543, 790, 812, 904
BstHHI	GCGC	1 cut(s)	915
BstKTI	GATC	4 cut(s)	235, 560, 577, 835
BstMAI	GTCTC	2 cut(s)	15, 987
BstMBI	GATC	4 cut(s)	232, 557, 574, 832
BstMWI	GCNNNNNNNGC	2 cut(s)	358, 785
BstNI	CCWGG	3 cut(s)	76, 155, 818
BstNSI	RCATGY	2 cut(s)	301, 886
BstSCI	CCNGG	3 cut(s)	74, 153, 816
BstV1I	GCAGC	2 cut(s)	89, 339
BstV2I	GAAGAC	1 cut(s)	214
BsuI	GTATCC	1 cut(s)	961
BsuRI	GGCC	4 cut(s)	47, 153, 361, 631
BtsCI	GGATG	6 cut(s)	319, 400, 543, 790, 812, 904
BtsI	GCAGTG	1 cut(s)	257
BtsIMutI	CAGTG	1 cut(s)	257
Cac8I	GCNNGC	2 cut(s)	299, 495
CciI	TCATGA	1 cut(s)	244
CfoI	GCGC	1 cut(s)	915
Cfr13I	GGNCC	1 cut(s)	359
CsiI	ACCWGGT	1 cut(s)	816
Csp6I	GTAC	4 cut(s)	254, 425, 438, 754
CviAII	CATG	7 cut(s)	245, 298, 305, 374, 776, 883, 895
CviQI	GTAC	4 cut(s)	254, 425, 438, 754
DdeI	CTNAG	2 cut(s)	236, 369
DpnI	GATC	4 cut(s)	234, 559, 576, 834
DpnII	GATC	4 cut(s)	232, 557, 574, 832
DraIII	CACNNNGTG	1 cut(s)	820
EaeI	YGGCCR	1 cut(s)	45
Eam1104I	CTCTTC	1 cut(s)	444
EarI	CTCTTC	1 cut(s)	444
Eco57I	CTGAAG	2 cut(s)	621, 822
EcoO109I	RGGNCCY	1 cut(s)	359
EcoRI	GAATTC	1 cut(s)	18
EcoRII	CCWGG	3 cut(s)	74, 153, 816
EcoT22I	ATGCAT	2 cut(s)	303, 904
FaeI	CATG	7 cut(s)	248, 301, 308, 377, 779, 886, 898
FatI	CATG	7 cut(s)	244, 297, 304, 373, 775, 882, 894
FblI	GTMKAC	1 cut(s)	289
Fnu4HI	GCNGC	3 cut(s)	103, 151, 353
FokI	GGATG	6 cut(s)	326, 407, 550, 797, 819, 911
Fsp4HI	GCNGC	3 cut(s)	103, 151, 353
FspBI	CTAG	3 cut(s)	207, 356, 555
FspI	TGCGCA	1 cut(s)	914
GlaI	GCGC	1 cut(s)	914
GluI	GCNGC	3 cut(s)	103, 151, 353
HaeIII	GGCC	4 cut(s)	47, 153, 361, 631
HapII	CCGG	2 cut(s)	44, 86
HhaI	GCGC	1 cut(s)	915
Hin1II	CATG	7 cut(s)	248, 301, 308, 377, 779, 886, 898
Hin6I	GCGC	1 cut(s)	913
HinP1I	GCGC	1 cut(s)	913
HincII	GTYRAC	2 cut(s)	529, 850
HindII	GTYRAC	2 cut(s)	529, 850
HinfI	GANTC	7 cut(s)	8, 71, 136, 174, 335, 365, 740
HpaII	CCGG	2 cut(s)	44, 86
HphI	GGTGA	1 cut(s)	49
Hpy166II	GTNNAC	4 cut(s)	290, 529, 614, 850
Hpy188I	TCNGA	7 cut(s)	66, 179, 334, 340, 370, 837, 889
Hpy188III	TCNNGA	4 cut(s)	245, 535, 800, 941
Hpy8I	GTNNAC	4 cut(s)	290, 529, 614, 850
HpyAV	CCTTC	5 cut(s)	283, 599, 645, 757, 797
HpyCH4III	ACNGT	2 cut(s)	380, 937
HpyCH4V	TGCA	8 cut(s)	166, 301, 308, 497, 597, 779, 788, 902
HpyF10VI	GCNNNNNNNGC	2 cut(s)	358, 785
HpyF3I	CTNAG	2 cut(s)	236, 369
Hsp92II	CATG	7 cut(s)	248, 301, 308, 377, 779, 886, 898
HspAI	GCGC	1 cut(s)	913
KpnI	GGTACC	2 cut(s)	257, 428
Kzo9I	GATC	4 cut(s)	232, 557, 574, 832
LmnI	GCTCC	1 cut(s)	403
Lsp1109I	GCAGC	2 cut(s)	89, 339
LweI	GCATC	5 cut(s)	310, 385, 689, 775, 889
MabI	ACCWGGT	1 cut(s)	816
MaeI	CTAG	3 cut(s)	207, 356, 555
MalI	GATC	4 cut(s)	234, 559, 576, 834
MbiI	CCGCTC	1 cut(s)	62
MboI	GATC	4 cut(s)	232, 557, 574, 832
MboII	GAAGA	7 cut(s)	36, 214, 461, 491, 735, 764, 939
MluCI	AATT	4 cut(s)	18, 519, 724, 1039
MlyI	GAGTC	2 cut(s)	17, 183
MmeI	TCCRAC	2 cut(s)	157, 444
Mph1103I	ATGCAT	2 cut(s)	303, 904
MroXI	GAANNNNTTC	1 cut(s)	483
MseI	TTAA	2 cut(s)	108, 923
MslI	CAYNNNNRTG	1 cut(s)	897
MspI	CCGG	2 cut(s)	44, 86
MspR9I	CCNGG	3 cut(s)	76, 155, 818
MvaI	CCWGG	3 cut(s)	76, 155, 818
MwoI	GCNNNNNNNGC	2 cut(s)	358, 785
NdeII	GATC	4 cut(s)	232, 557, 574, 832
NlaIII	CATG	7 cut(s)	248, 301, 308, 377, 779, 886, 898
NlaIV	GGNNCC	3 cut(s)	255, 426, 812
NsbI	TGCGCA	1 cut(s)	914
NsiI	ATGCAT	2 cut(s)	303, 904
NspI	RCATGY	2 cut(s)	301, 886
NspV	TTCGAA	1 cut(s)	22
PaeI	GCATGC	1 cut(s)	301
PagI	TCATGA	1 cut(s)	244
PdmI	GAANNNNTTC	1 cut(s)	483
PfeI	GAWTC	5 cut(s)	71, 136, 335, 365, 740
PflMI	CCANNNNNTGG	3 cut(s)	146, 671, 820
PfoI	TCCNGGA	1 cut(s)	74
PkrI	GCNGC	3 cut(s)	104, 152, 354
PleI	GAGTC	2 cut(s)	16, 182
PpsI	GAGTC	2 cut(s)	16, 182
Psp6I	CCWGG	3 cut(s)	74, 153, 816
PspGI	CCWGG	3 cut(s)	74, 153, 816
PspN4I	GGNNCC	3 cut(s)	255, 426, 812
PspPI	GGNCC	1 cut(s)	359
RsaI	GTAC	4 cut(s)	255, 426, 439, 755
RsaNI	GTAC	4 cut(s)	254, 425, 438, 754
RseI	CAYNNNNRTG	1 cut(s)	897
SaqAI	TTAA	2 cut(s)	108, 923
SatI	GCNGC	3 cut(s)	103, 151, 353
Sau3AI	GATC	4 cut(s)	232, 557, 574, 832
Sau96I	GGNCC	1 cut(s)	359
ScaI	AGTACT	2 cut(s)	439, 755
SchI	GAGTC	2 cut(s)	17, 183
ScrFI	CCNGG	3 cut(s)	76, 155, 818
SetI	ASST	9 cut(s)	124, 220, 426, 534, 556, 591, 714, 768, 822
SexAI	ACCWGGT	1 cut(s)	816
SfaNI	GCATC	5 cut(s)	310, 385, 689, 775, 889
SfuI	TTCGAA	1 cut(s)	22
SmiMI	CAYNNNNRTG	1 cut(s)	897
SmlI	CTYRAG	1 cut(s)	549
SmoI	CTYRAG	1 cut(s)	549
SphI	GCATGC	1 cut(s)	301
Sse9I	AATT	4 cut(s)	18, 519, 724, 1039
SsiI	CCGC	3 cut(s)	60, 89, 150
SspI	AATATT	2 cut(s)	82, 161
SspMI	CTAG	3 cut(s)	207, 356, 555
StyD4I	CCNGG	3 cut(s)	74, 153, 816
TaaI	ACNGT	2 cut(s)	380, 937
TaqI	TCGA	3 cut(s)	22, 143, 940
TasI	AATT	4 cut(s)	18, 519, 724, 1039
TatI	WGTACW	2 cut(s)	437, 753
TauI	GCSGC	1 cut(s)	153
TfiI	GAWTC	5 cut(s)	71, 136, 335, 365, 740
Tru1I	TTAA	2 cut(s)	108, 923
Tru9I	TTAA	2 cut(s)	108, 923
TscAI	CASTG	1 cut(s)	264
TseI	GCWGC	2 cut(s)	102, 352
TspDTI	ATGAA	4 cut(s)	265, 462, 554, 764
TspGWI	ACGGA	1 cut(s)	358
TspRI	CASTG	1 cut(s)	264
Van91I	CCANNNNNTGG	3 cut(s)	146, 671, 820
XapI	RAATTY	1 cut(s)	18
XceI	RCATGY	2 cut(s)	301, 886
XmiI	GTMKAC	1 cut(s)	289
XmnI	GAANNNNTTC	1 cut(s)	483
XspI	CTAG	3 cut(s)	207, 356, 555
ZrmI	AGTACT	2 cut(s)	439, 755
Zsp2I	ATGCAT	2 cut(s)	303, 904

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.