Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001794

Physical Location & Seq

Genomic Coordinates Forward (+)

55839229 .. 55839796

Gene Structure 568 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG326400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 186 bp

ATGCAATCTGCTTTTTGTCATTTCAGGAACAGATTTTACCAAGTTTTCTATGAATCATTCAACGACCAATTTGCTGCAATGGATGCAATTCTGAATGGAAAGGAATTATTTGCCCTCCAGGCATACAAGAATGTGTTAGATAAGAACATAGGAGTAGATTGGGGTGGGCCAAAACCAGTTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000086 GO:0000278 GO:0003674 GO:0003682 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007049 GO:0008150 GO:0008152 GO:0008214 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016491 GO:0016569 GO:0016570 GO:0016577 GO:0016705 GO:0016706 GO:0019219 GO:0019222 GO:0019538 GO:0022402 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032451 GO:0032452 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044839 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051213 GO:0051252 GO:0051254 GO:0051276 GO:0051864 GO:0055114 GO:0060255 GO:0065007 GO:0070076 GO:0070544 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:1901564 GO:1902680 GO:1903047 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_8

Protein Analysis

61

Amino Acids

7.05

Weight (kDa)

6.52

Isoelectric Point (pI)

41.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001794)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26135 AT5G19840 AT5G19840
fragaria_vesca	FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940
malus_domestica	MD03G1258000.v1.1 MD03G1258100.v1.1 MD11G1278700.v1.1
prunus_persica	Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1
pyrus_communis	pycom03g20440 pycom11g24620 pycom11g24630
rosa_chinensis	RchiOBHm_Chr6g0289901 RchiOBHm_Chr6g0289911 RchiOBHm_Chr6g0289951
rosa_laevigata	RLG00000012257
rosa_multiflora	Rmu_sc0001312.1_g000002 Rmu_sc0023926.1_g000002
rosa_roxburghii	Rroxscaffold_7G00177480
rosa_rugosa	Rorug06G0208000
rosa_samantha	Rh6AG319300 Rh6BG326300 Rh6BG326400 Rh6CG332300 Rh6DG318000 Rh6DG318100
rosa_wichuraiana	Rw0G009780 Rw0G009800 Rw6G027540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	1 cut(s)	61
AjnI	CCWGG	1 cut(s)	117
AoxI	GGCC	1 cut(s)	167
ApeKI	GCWGC	1 cut(s)	74
AspS9I	GGNCC	1 cut(s)	167
BbvI	GCAGC	1 cut(s)	61
BcgI	CGANNNNNNTGC	2 cut(s)	53, 87
BciT130I	CCWGG	1 cut(s)	119
BglI	GCCNNNNNGGC	1 cut(s)	119
BisI	GCNGC	1 cut(s)	75
BlsI	GCNGC	1 cut(s)	76
Bme1390I	CCNGG	1 cut(s)	119
BmgT120I	GGNCC	1 cut(s)	167
BmrFI	CCNGG	1 cut(s)	119
BmsI	GCATC	1 cut(s)	73
BpmI	CTGGAG	1 cut(s)	101
Bse1I	ACTGG	1 cut(s)	176
Bse3DI	GCAATG	1 cut(s)	84
BseBI	CCWGG	1 cut(s)	119
BseGI	GGATG	1 cut(s)	88
BseMI	GCAATG	1 cut(s)	84
BseNI	ACTGG	1 cut(s)	176
BseXI	GCAGC	1 cut(s)	61
BshFI	GGCC	1 cut(s)	169
BsnI	GGCC	1 cut(s)	169
BspANI	GGCC	1 cut(s)	169
BsrDI	GCAATG	1 cut(s)	84
BsrI	ACTGG	1 cut(s)	176
Bst2UI	CCWGG	1 cut(s)	119
BstAPI	GCANNNNNTGC	1 cut(s)	83
BstF5I	GGATG	1 cut(s)	88
BstMWI	GCNNNNNNNGC	2 cut(s)	83, 119
BstNI	CCWGG	1 cut(s)	119
BstSCI	CCNGG	1 cut(s)	117
BstV1I	GCAGC	1 cut(s)	61
BsuRI	GGCC	1 cut(s)	169
BtsCI	GGATG	1 cut(s)	88
Cfr13I	GGNCC	1 cut(s)	167
CviJI	RGCY	1 cut(s)	169
CviKI_1	RGCY	1 cut(s)	169
EcoRII	CCWGG	1 cut(s)	117
FaiI	YATR	3 cut(s)	51, 124, 149
Fnu4HI	GCNGC	1 cut(s)	75
FokI	GGATG	1 cut(s)	95
Fsp4HI	GCNGC	1 cut(s)	75
GluI	GCNGC	1 cut(s)	75
GsuI	CTGGAG	1 cut(s)	101
HaeIII	GGCC	1 cut(s)	169
HinfI	GANTC	1 cut(s)	53
Hpy188I	TCNGA	1 cut(s)	93
Hpy188III	TCNNGA	1 cut(s)	25
HpyCH4V	TGCA	3 cut(s)	4, 77, 86
HpyF10VI	GCNNNNNNNGC	2 cut(s)	83, 119
LpnPI	CCDG	3 cut(s)	10, 104, 131
Lsp1109I	GCAGC	1 cut(s)	61
LweI	GCATC	1 cut(s)	73
MluCI	AATT	3 cut(s)	68, 87, 104
MnlI	CCTC	1 cut(s)	125
MspR9I	CCNGG	1 cut(s)	119
MvaI	CCWGG	1 cut(s)	119
MwoI	GCNNNNNNNGC	2 cut(s)	83, 119
PfeI	GAWTC	1 cut(s)	53
PkrI	GCNGC	1 cut(s)	76
Psp6I	CCWGG	1 cut(s)	117
PspGI	CCWGG	1 cut(s)	117
PspPI	GGNCC	1 cut(s)	167
PsrI	GAACNNNNNNTAC	2 cut(s)	20, 52
SatI	GCNGC	1 cut(s)	75
Sau96I	GGNCC	1 cut(s)	167
ScrFI	CCNGG	1 cut(s)	119
SfaNI	GCATC	1 cut(s)	73
SgeI	CNNG	5 cut(s)	37, 53, 130, 131, 139
Sse9I	AATT	3 cut(s)	68, 87, 104
StyD4I	CCNGG	1 cut(s)	117
TasI	AATT	3 cut(s)	68, 87, 104
TfiI	GAWTC	1 cut(s)	53
TseI	GCWGC	1 cut(s)	74
TspDTI	ATGAA	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.