Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023926.1

Orthogroup ID

OG0001794

Physical Location & Seq

Genomic Coordinates Reverse (-)

6102 .. 9345

Gene Structure 3244 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023926.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

atggggaggcatcaaatcatagatcagaatgacaaggatttggatcaggcgagtgagaggaaggatcttgaaggaaaggagctaaaacaagaaactactttgcatgaattggaaccagttgccgtccatgctcttcatgaacttgtttctttagttcacagtcatgtcaatgctgcagagcaaagagaaccggagcaatccacttcaacaactgattctgcactcagtgtcaaggacaagggtagcaaagttgtgagagtgcatgcatttaggttggaagatgacccagtcgctaacattatttggactcttccaccatgcacccttcaacgcgtacttcttgccatggtgaaaagtttcccaagaactttggagggtttaatactgcacatgcttacaccagtgggagcagaagtgcttacacgtaaatttgaagaaatggatgacctaaacaccaaggaagatcggaacagattctaccaagttttctatgaatcattcaacgaccaatttgctgcaatggatgcaattctgaatggaaaggaattatttgccctccaggcatacaagaatgtgttagataagaacataggagtagattggggtgggccaagaccagttgtgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000086 GO:0000278 GO:0003674 GO:0003682 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007049 GO:0008150 GO:0008152 GO:0008214 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016491 GO:0016569 GO:0016570 GO:0016577 GO:0016705 GO:0016706 GO:0019219 GO:0019222 GO:0019538 GO:0022402 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032451 GO:0032452 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044839 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051213 GO:0051252 GO:0051254 GO:0051276 GO:0051864 GO:0055114 GO:0060255 GO:0065007 GO:0070076 GO:0070544 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:1901564 GO:1902680 GO:1903047 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_8

Protein Analysis

208

Amino Acids

23.6

Weight (kDa)

5.27

Isoelectric Point (pI)

38.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001794)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26135 AT5G19840 AT5G19840
fragaria_vesca	FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940
malus_domestica	MD03G1258000.v1.1 MD03G1258100.v1.1 MD11G1278700.v1.1
prunus_persica	Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1
pyrus_communis	pycom03g20440 pycom11g24620 pycom11g24630
rosa_chinensis	RchiOBHm_Chr6g0289901 RchiOBHm_Chr6g0289911 RchiOBHm_Chr6g0289951
rosa_laevigata	RLG00000012257
rosa_multiflora	Rmu_sc0001312.1_g000002 Rmu_sc0023926.1_g000002
rosa_roxburghii	Rroxscaffold_7G00177480
rosa_rugosa	Rorug06G0208000
rosa_samantha	Rh6AG319300 Rh6BG326300 Rh6BG326400 Rh6CG332300 Rh6DG318000 Rh6DG318100
rosa_wichuraiana	Rw0G009780 Rw0G009800 Rw6G027540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	333
AclWI	GGATC	2 cut(s)	51, 72
AcsI	RAATTY	1 cut(s)	428
AdeI	CACNNNGTG	1 cut(s)	227
AfaI	GTAC	1 cut(s)	336
AflIII	ACRYGT	2 cut(s)	331, 422
AgsI	TTSAA	5 cut(s)	71, 207, 329, 434, 502
AjnI	CCWGG	1 cut(s)	558
AluBI	AGCT	1 cut(s)	82
AluI	AGCT	1 cut(s)	82
AlwI	GGATC	2 cut(s)	51, 72
AoxI	GGCC	1 cut(s)	608
ApeKI	GCWGC	2 cut(s)	173, 515
ApoI	RAATTY	1 cut(s)	428
Asp700I	GAANNNNTTC	2 cut(s)	356, 473
AspS9I	GGNCC	1 cut(s)	608
AsuHPI	GGTGA	1 cut(s)	361
BbvI	GCAGC	2 cut(s)	160, 502
BceAI	ACGGC	1 cut(s)	107
BcgI	CGANNNNNNTGC	2 cut(s)	494, 528
BciT130I	CCWGG	1 cut(s)	560
BfmI	CTRYAG	1 cut(s)	174
BglI	GCCNNNNNGGC	1 cut(s)	560
BisI	GCNGC	2 cut(s)	174, 516
BlsI	GCNGC	2 cut(s)	175, 517
Bme1390I	CCNGG	1 cut(s)	560
BmgT120I	GGNCC	1 cut(s)	608
BmiI	GGNNCC	1 cut(s)	114
BmrFI	CCNGG	1 cut(s)	560
BmrI	ACTGGG	1 cut(s)	281
BmsI	GCATC	2 cut(s)	19, 514
BmuI	ACTGGG	1 cut(s)	281
BpmI	CTGGAG	1 cut(s)	542
BsaAI	YACGTR	1 cut(s)	425
BsaBI	GATNNNNATC	1 cut(s)	42
BsaJI	CCNNGG	2 cut(s)	345, 456
BsaWI	WCCGGW	1 cut(s)	190
BsaXI	ACNNNNNCTCC	2 cut(s)	399, 429
Bse1I	ACTGG	4 cut(s)	116, 287, 401, 617
Bse3DI	GCAATG	1 cut(s)	525
Bse8I	GATNNNNATC	1 cut(s)	42
BseBI	CCWGG	1 cut(s)	560
BseDI	CCNNGG	2 cut(s)	345, 456
BseGI	GGATG	2 cut(s)	448, 529
BseJI	GATNNNNATC	1 cut(s)	42
BseMI	GCAATG	1 cut(s)	525
BseMII	CTCAG	1 cut(s)	238
BseNI	ACTGG	4 cut(s)	116, 287, 401, 617
BseXI	GCAGC	2 cut(s)	160, 502
BsgI	GTGCAG	2 cut(s)	204, 371
Bsh1236I	CGCG	1 cut(s)	333
BshFI	GGCC	1 cut(s)	610
BsiSI	CCGG	1 cut(s)	191
BsnI	GGCC	1 cut(s)	610
Bsp143I	GATC	4 cut(s)	22, 43, 64, 463
Bsp19I	CCATGG	1 cut(s)	345
BspANI	GGCC	1 cut(s)	610
BspCNI	CTCAG	1 cut(s)	237
BspFNI	CGCG	1 cut(s)	333
BspHI	TCATGA	1 cut(s)	136
BspLI	GGNNCC	1 cut(s)	114
BspMAI	CTGCAG	1 cut(s)	178
BspPI	GGATC	2 cut(s)	51, 72
BspQI	GCTCTTC	1 cut(s)	138
BsrDI	GCAATG	1 cut(s)	525
BsrI	ACTGG	4 cut(s)	116, 287, 401, 617
BssECI	CCNNGG	2 cut(s)	345, 456
BssMI	GATC	4 cut(s)	22, 43, 64, 463
BssT1I	CCWWGG	2 cut(s)	345, 456
Bst2UI	CCWGG	1 cut(s)	560
Bst4CI	ACNGT	1 cut(s)	161
Bst6I	CTCTTC	2 cut(s)	138, 315
BstAPI	GCANNNNNTGC	1 cut(s)	524
BstBAI	YACGTR	1 cut(s)	425
BstC8I	GCNNGC	1 cut(s)	264
BstDEI	CTNAG	1 cut(s)	224
BstDSI	CCRYGG	1 cut(s)	345
BstF5I	GGATG	2 cut(s)	448, 529
BstFNI	CGCG	1 cut(s)	333
BstKTI	GATC	4 cut(s)	25, 46, 67, 466
BstMBI	GATC	4 cut(s)	22, 43, 64, 463
BstMWI	GCNNNNNNNGC	3 cut(s)	128, 524, 560
BstNI	CCWGG	1 cut(s)	560
BstNSI	RCATGY	2 cut(s)	266, 394
BstSCI	CCNGG	1 cut(s)	558
BstSFI	CTRYAG	1 cut(s)	174
BstUI	CGCG	1 cut(s)	333
BstV1I	GCAGC	2 cut(s)	160, 502
BstX2I	RGATCY	1 cut(s)	64
BstYI	RGATCY	1 cut(s)	64
BsuRI	GGCC	1 cut(s)	610
BtgI	CCRYGG	1 cut(s)	345
BtsCI	GGATG	2 cut(s)	448, 529
BtsIMutI	CAGTG	2 cut(s)	232, 408
Cac8I	GCNNGC	1 cut(s)	264
CciI	TCATGA	1 cut(s)	136
Cfr13I	GGNCC	1 cut(s)	608
Csp6I	GTAC	1 cut(s)	335
CviAII	CATG	8 cut(s)	104, 128, 137, 164, 263, 318, 346, 391
CviJI	RGCY	2 cut(s)	82, 610
CviKI_1	RGCY	2 cut(s)	82, 610
CviQI	GTAC	1 cut(s)	335
DdeI	CTNAG	1 cut(s)	224
DpnI	GATC	4 cut(s)	24, 45, 66, 465
DpnII	GATC	4 cut(s)	22, 43, 64, 463
DraIII	CACNNNGTG	1 cut(s)	227
Eam1104I	CTCTTC	2 cut(s)	138, 315
EarI	CTCTTC	2 cut(s)	138, 315
Eco130I	CCWWGG	2 cut(s)	345, 456
EcoRII	CCWGG	1 cut(s)	558
EcoT14I	CCWWGG	2 cut(s)	345, 456
EcoT22I	ATGCAT	1 cut(s)	268
ErhI	CCWWGG	2 cut(s)	345, 456
FaeI	CATG	8 cut(s)	107, 131, 140, 167, 266, 321, 349, 394
FatI	CATG	8 cut(s)	103, 127, 136, 163, 262, 317, 345, 390
Fnu4HI	GCNGC	2 cut(s)	174, 516
FokI	GGATG	2 cut(s)	455, 536
Fsp4HI	GCNGC	2 cut(s)	174, 516
GluI	GCNGC	2 cut(s)	174, 516
GsuI	CTGGAG	1 cut(s)	542
HaeIII	GGCC	1 cut(s)	610
HapII	CCGG	1 cut(s)	191
Hin1II	CATG	8 cut(s)	107, 131, 140, 167, 266, 321, 349, 394
HinfI	GANTC	4 cut(s)	215, 307, 474, 494
HpaII	CCGG	1 cut(s)	191
HphI	GGTGA	1 cut(s)	361
Hpy166II	GTNNAC	1 cut(s)	157
Hpy188I	TCNGA	3 cut(s)	27, 468, 534
Hpy188III	TCNNGA	2 cut(s)	68, 137
Hpy8I	GTNNAC	1 cut(s)	157
HpyAV	CCTTC	3 cut(s)	55, 65, 335
HpyCH4III	ACNGT	1 cut(s)	161
HpyCH4IV	ACGT	1 cut(s)	424
HpyCH4V	TGCA	9 cut(s)	103, 176, 221, 262, 266, 321, 388, 518, 527
HpyF10VI	GCNNNNNNNGC	3 cut(s)	128, 524, 560
HpyF3I	CTNAG	1 cut(s)	224
HpySE526I	ACGT	1 cut(s)	424
Hsp92II	CATG	8 cut(s)	107, 131, 140, 167, 266, 321, 349, 394
Kzo9I	GATC	4 cut(s)	22, 43, 64, 463
LguI	GCTCTTC	1 cut(s)	138
LmnI	GCTCC	3 cut(s)	79, 193, 407
LpnPI	CCDG	7 cut(s)	32, 129, 204, 300, 414, 545, 572
Lsp1109I	GCAGC	2 cut(s)	160, 502
LweI	GCATC	2 cut(s)	19, 514
MaeII	ACGT	1 cut(s)	424
MalI	GATC	4 cut(s)	24, 45, 66, 465
MboI	GATC	4 cut(s)	22, 43, 64, 463
MboII	GAAGA	5 cut(s)	125, 290, 302, 446, 473
MflI	RGATCY	1 cut(s)	64
MluCI	AATT	5 cut(s)	107, 428, 509, 528, 545
MluI	ACGCGT	1 cut(s)	331
MlyI	GAGTC	1 cut(s)	301
MmeI	TCCRAC	1 cut(s)	255
MnlI	CCTC	3 cut(s)	51, 367, 566
Mph1103I	ATGCAT	1 cut(s)	268
MroXI	GAANNNNTTC	2 cut(s)	356, 473
MseI	TTAA	1 cut(s)	380
MslI	CAYNNNNRTG	2 cut(s)	162, 168
MspI	CCGG	1 cut(s)	191
MspR9I	CCNGG	1 cut(s)	560
MvaI	CCWGG	1 cut(s)	560
MvnI	CGCG	1 cut(s)	333
MwoI	GCNNNNNNNGC	3 cut(s)	128, 524, 560
NcoI	CCATGG	1 cut(s)	345
NdeII	GATC	4 cut(s)	22, 43, 64, 463
NlaIII	CATG	8 cut(s)	107, 131, 140, 167, 266, 321, 349, 394
NlaIV	GGNNCC	1 cut(s)	114
NsiI	ATGCAT	1 cut(s)	268
NspI	RCATGY	2 cut(s)	266, 394
PaeI	GCATGC	1 cut(s)	266
PagI	TCATGA	1 cut(s)	136
PciSI	GCTCTTC	1 cut(s)	138
PdmI	GAANNNNTTC	2 cut(s)	356, 473
PfeI	GAWTC	3 cut(s)	215, 474, 494
PflFI	GACNNNGTC	1 cut(s)	287
PkrI	GCNGC	2 cut(s)	175, 517
PleI	GAGTC	1 cut(s)	301
PpsI	GAGTC	1 cut(s)	301
Ppu21I	YACGTR	1 cut(s)	425
Psp6I	CCWGG	1 cut(s)	558
PspGI	CCWGG	1 cut(s)	558
PspN4I	GGNNCC	1 cut(s)	114
PspPI	GGNCC	1 cut(s)	608
PsrI	GAACNNNNNNTAC	2 cut(s)	461, 493
PstI	CTGCAG	1 cut(s)	178
PsuI	RGATCY	1 cut(s)	64
PsyI	GACNNNGTC	1 cut(s)	287
RsaI	GTAC	1 cut(s)	336
RsaNI	GTAC	1 cut(s)	335
RseI	CAYNNNNRTG	2 cut(s)	162, 168
SapI	GCTCTTC	1 cut(s)	138
SaqAI	TTAA	1 cut(s)	380
SatI	GCNGC	2 cut(s)	174, 516
Sau3AI	GATC	4 cut(s)	22, 43, 64, 463
Sau96I	GGNCC	1 cut(s)	608
SchI	GAGTC	1 cut(s)	301
ScrFI	CCNGG	1 cut(s)	560
SetI	ASST	4 cut(s)	84, 275, 427, 450
SfaNI	GCATC	2 cut(s)	19, 514
SfcI	CTRYAG	1 cut(s)	174
SmiMI	CAYNNNNRTG	2 cut(s)	162, 168
SphI	GCATGC	1 cut(s)	266
Sse9I	AATT	5 cut(s)	107, 428, 509, 528, 545
StyD4I	CCNGG	1 cut(s)	558
StyI	CCWWGG	2 cut(s)	345, 456
TaaI	ACNGT	1 cut(s)	161
TaiI	ACGT	1 cut(s)	427
TasI	AATT	5 cut(s)	107, 428, 509, 528, 545
TfiI	GAWTC	3 cut(s)	215, 474, 494
Tru1I	TTAA	1 cut(s)	380
Tru9I	TTAA	1 cut(s)	380
TscAI	CASTG	2 cut(s)	232, 408
TseI	GCWGC	2 cut(s)	173, 515
TspDTI	ATGAA	4 cut(s)	120, 125, 153, 507
TspRI	CASTG	2 cut(s)	232, 408
Tth111I	GACNNNGTC	1 cut(s)	287
XapI	RAATTY	1 cut(s)	428
XceI	RCATGY	2 cut(s)	266, 394
XmnI	GAANNNNTTC	2 cut(s)	356, 473
Zsp2I	ATGCAT	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.