Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0001794

Physical Location & Seq

Genomic Coordinates Forward (+)

27543646 .. 27545987

Gene Structure 2342 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g24620.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGAGTCGTCTCTGCGAGTTCGAAGATTGAACGAAGTTCCTTCGGCCACAGACTTCGCATCTCGGATCGAATCCGAGAACGTTCCCGCCGTTTTCAGCGGCTGCGTCACAGATTGGAAAGCTTTCTCCAATTGGAATCCATGTAATGGCGGTCTCGATTATTTGCAGGAGCGGGTTGGATTGTGTGTTGTGGAAGCTATGCTATCTGATTCAGCACCTGTATTCAATGGTGATATTAGAAGCCATGAGAGGGTACCGCTGCAATTTTCTGCATTCATTGGTCTATGTAAGAAACGCATGCATCATTCGGAGGATGGTTCCGGTGTTGAATCAGATCGGCATGGGCTACTGGAGTCTTCATCTGAGTATGACAGTAAGCCCTATGAGGATGCTCCTCAACAAATCTATTTAGCACAGATCCCAATAATCAATACTGAAACTGAAGAGAGGGTTCAACTAGGATCTTTGAGGGAAGATATCCAAACGCCTGTATTTTTGGAGGACAAAGTAATAGTTTCTATCAACTTGTGGATGAACAATGCTCAAGCTAGATCAAGTACTCACTATGATCCACACCATAACCTTCTCTGCGTAGTCTCTGGCGGCAAACAAGTGGTTTTATGGCCTCCTTCAGCAAGTCCTATGTTATACCCTAGGCCAATATATGGGGAGGCATCAAATCACAGTTCTGTTCCTTTAGAGAACCCAAACTTTTCAAATTATCCAAGAGCACAATGTTTAATGCAGCACTCGCAGAAGCTTACTCTTCAGCCAGGTGACGCCCTTTTCATTCCTGAAGGCTGGTTCCACCAGGTGGATAGTGATGATCGACCATTGCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000086 GO:0000278 GO:0003674 GO:0003682 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007049 GO:0008150 GO:0008152 GO:0008214 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016491 GO:0016569 GO:0016570 GO:0016577 GO:0016705 GO:0016706 GO:0019219 GO:0019222 GO:0019538 GO:0022402 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032451 GO:0032452 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044839 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051213 GO:0051252 GO:0051254 GO:0051276 GO:0051864 GO:0055114 GO:0060255 GO:0065007 GO:0070076 GO:0070544 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:1901564 GO:1902680 GO:1903047 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_8

Protein Analysis

281

Amino Acids

31.41

Weight (kDa)

5.09

Isoelectric Point (pI)

57.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001794)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26135 AT5G19840 AT5G19840
fragaria_vesca	FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940
malus_domestica	MD03G1258000.v1.1 MD03G1258100.v1.1 MD11G1278700.v1.1
prunus_persica	Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1
pyrus_communis	pycom03g20440 pycom11g24620 pycom11g24630
rosa_chinensis	RchiOBHm_Chr6g0289901 RchiOBHm_Chr6g0289911 RchiOBHm_Chr6g0289951
rosa_laevigata	RLG00000012257
rosa_multiflora	Rmu_sc0001312.1_g000002 Rmu_sc0023926.1_g000002
rosa_roxburghii	Rroxscaffold_7G00177480
rosa_rugosa	Rorug06G0208000
rosa_samantha	Rh6AG319300 Rh6BG326300 Rh6BG326400 Rh6CG332300 Rh6DG318000 Rh6DG318100
rosa_wichuraiana	Rw0G009780 Rw0G009800 Rw6G027540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	253
AccB1I	GGYRCC	1 cut(s)	253
AccB7I	CCANNNNNTGG	3 cut(s)	146, 665, 814
AccBSI	CCGCTC	1 cut(s)	172
AciI	CCGC	6 cut(s)	87, 99, 150, 172, 257, 603
AclI	AACGTT	1 cut(s)	81
AclWI	GGATC	4 cut(s)	74, 412, 469, 563
AcoI	YGGCCR	1 cut(s)	45
AcuI	CTGAAG	4 cut(s)	462, 615, 752, 816
AcyI	GRCGYC	1 cut(s)	780
AdeI	CACNNNGTG	1 cut(s)	814
AfaI	GTAC	2 cut(s)	255, 559
AfiI	CCNNNNNNNGG	4 cut(s)	146, 250, 665, 814
AgsI	TTSAA	5 cut(s)	31, 226, 329, 455, 717
AjnI	CCWGG	2 cut(s)	772, 810
AluBI	AGCT	4 cut(s)	122, 197, 548, 760
AluI	AGCT	4 cut(s)	122, 197, 548, 760
Alw21I	GWGCWC	1 cut(s)	733
Alw26I	GTCTC	3 cut(s)	15, 158, 601
AlwI	GGATC	4 cut(s)	74, 412, 469, 563
AlwNI	CAGNNNCTG	2 cut(s)	102, 218
AoxI	GGCC	3 cut(s)	45, 623, 656
ApeKI	GCWGC	3 cut(s)	102, 259, 745
Asp700I	GAANNNNTTC	1 cut(s)	122
Asp718I	GGTACC	1 cut(s)	253
AspA2I	CCTAGG	1 cut(s)	653
AsuHPI	GGTGA	2 cut(s)	242, 788
AsuII	TTCGAA	1 cut(s)	22
AvrII	CCTAGG	1 cut(s)	653
BanI	GGYRCC	1 cut(s)	253
BbsI	GAAGAC	1 cut(s)	348
Bbv12I	GWGCWC	1 cut(s)	733
BbvI	GCAGC	3 cut(s)	89, 246, 757
BccI	CCATC	1 cut(s)	308
BceAI	ACGGC	2 cut(s)	74, 823
BciT130I	CCWGG	2 cut(s)	774, 812
BcoDI	GTCTC	3 cut(s)	15, 158, 601
BfaI	CTAG	3 cut(s)	458, 549, 654
BisI	GCNGC	5 cut(s)	100, 103, 260, 604, 746
BlnI	CCTAGG	1 cut(s)	653
BlsI	GCNGC	5 cut(s)	101, 104, 261, 605, 747
BmcAI	AGTACT	1 cut(s)	559
Bme1390I	CCNGG	2 cut(s)	774, 812
BmiI	GGNNCC	3 cut(s)	255, 319, 806
BmrFI	CCNGG	2 cut(s)	774, 812
BmsI	GCATC	4 cut(s)	68, 310, 379, 683
BpiI	GAAGAC	1 cut(s)	348
BpmI	CTGGAG	1 cut(s)	371
Bpu14I	TTCGAA	1 cut(s)	22
BpuEI	CTTGAG	1 cut(s)	528
BsaHI	GRCGYC	1 cut(s)	780
BsaI	GGTCTC	1 cut(s)	158
BsaJI	CCNNGG	1 cut(s)	653
BsaWI	WCCGGW	1 cut(s)	320
Bsc4I	CCNNNNNNNGG	4 cut(s)	146, 250, 665, 814
Bse1I	ACTGG	1 cut(s)	354
Bse3DI	GCAATG	1 cut(s)	833
BseBI	CCWGG	2 cut(s)	774, 812
BseDI	CCNNGG	1 cut(s)	653
BseGI	GGATG	3 cut(s)	319, 394, 537
BseLI	CCNNNNNNNGG	4 cut(s)	146, 250, 665, 814
BseMI	GCAATG	1 cut(s)	833
BseMII	CTCAG	1 cut(s)	354
BseNI	ACTGG	1 cut(s)	354
BseRI	GAGGAG	1 cut(s)	384
BseXI	GCAGC	3 cut(s)	89, 246, 757
BshFI	GGCC	3 cut(s)	47, 625, 658
BshNI	GGYRCC	1 cut(s)	253
BsiHKAI	GWGCWC	1 cut(s)	733
BsiSI	CCGG	1 cut(s)	321
BslI	CCNNNNNNNGG	4 cut(s)	146, 250, 665, 814
BsmAI	GTCTC	3 cut(s)	15, 158, 601
BsmBI	CGTCTC	1 cut(s)	15
BsmI	GAATGC	1 cut(s)	272
BsnI	GGCC	3 cut(s)	47, 625, 658
Bso31I	GGTCTC	1 cut(s)	158
Bsp119I	TTCGAA	1 cut(s)	22
Bsp1286I	GDGCHC	1 cut(s)	733
Bsp143I	GATC	7 cut(s)	66, 334, 417, 461, 551, 568, 826
BspACI	CCGC	6 cut(s)	87, 99, 150, 172, 257, 603
BspANI	GGCC	3 cut(s)	47, 625, 658
BspCNI	CTCAG	1 cut(s)	355
BspLI	GGNNCC	3 cut(s)	255, 319, 806
BspPI	GGATC	4 cut(s)	74, 412, 469, 563
BspT104I	TTCGAA	1 cut(s)	22
BspT107I	GGYRCC	1 cut(s)	253
BspTNI	GGTCTC	1 cut(s)	158
BsrBI	CCGCTC	1 cut(s)	172
BsrDI	GCAATG	1 cut(s)	833
BsrI	ACTGG	1 cut(s)	354
BssECI	CCNNGG	1 cut(s)	653
BssMI	GATC	7 cut(s)	66, 334, 417, 461, 551, 568, 826
BssNI	GRCGYC	1 cut(s)	780
BssT1I	CCWWGG	1 cut(s)	653
Bst2UI	CCWGG	2 cut(s)	774, 812
Bst4CI	ACNGT	2 cut(s)	374, 686
Bst6I	CTCTTC	2 cut(s)	438, 771
BstACI	GRCGYC	1 cut(s)	780
BstBI	TTCGAA	1 cut(s)	22
BstC8I	GCNNGC	1 cut(s)	299
BstDEI	CTNAG	1 cut(s)	363
BstF5I	GGATG	3 cut(s)	319, 394, 537
BstKTI	GATC	7 cut(s)	69, 337, 420, 464, 554, 571, 829
BstMAI	GTCTC	3 cut(s)	15, 158, 601
BstMBI	GATC	7 cut(s)	66, 334, 417, 461, 551, 568, 826
BstMWI	GCNNNNNNNGC	1 cut(s)	751
BstNI	CCWGG	2 cut(s)	774, 812
BstNSI	RCATGY	1 cut(s)	301
BstSCI	CCNGG	2 cut(s)	772, 810
BstV1I	GCAGC	3 cut(s)	89, 246, 757
BstV2I	GAAGAC	1 cut(s)	348
BstX2I	RGATCY	2 cut(s)	417, 461
BstYI	RGATCY	2 cut(s)	417, 461
BsuRI	GGCC	3 cut(s)	47, 625, 658
BtsCI	GGATG	3 cut(s)	319, 394, 537
Cac8I	GCNNGC	1 cut(s)	299
CaiI	CAGNNNCTG	2 cut(s)	102, 218
CseI	GACGC	2 cut(s)	94, 788
CsiI	ACCWGGT	1 cut(s)	810
Csp6I	GTAC	2 cut(s)	254, 558
CviAII	CATG	4 cut(s)	141, 245, 298, 341
CviQI	GTAC	2 cut(s)	254, 558
DdeI	CTNAG	1 cut(s)	363
DpnI	GATC	7 cut(s)	68, 336, 419, 463, 553, 570, 828
DpnII	GATC	7 cut(s)	66, 334, 417, 461, 551, 568, 826
DraIII	CACNNNGTG	1 cut(s)	814
EaeI	YGGCCR	1 cut(s)	45
Eam1104I	CTCTTC	2 cut(s)	438, 771
EarI	CTCTTC	2 cut(s)	438, 771
Eco130I	CCWWGG	1 cut(s)	653
Eco31I	GGTCTC	1 cut(s)	158
Eco32I	GATATC	1 cut(s)	478
Eco57I	CTGAAG	4 cut(s)	462, 615, 752, 816
EcoRII	CCWGG	2 cut(s)	772, 810
EcoRV	GATATC	1 cut(s)	478
EcoT14I	CCWWGG	1 cut(s)	653
EcoT22I	ATGCAT	1 cut(s)	303
ErhI	CCWWGG	1 cut(s)	653
Esp3I	CGTCTC	1 cut(s)	15
FaeI	CATG	4 cut(s)	144, 248, 301, 344
FatI	CATG	4 cut(s)	140, 244, 297, 340
FauI	CCCGC	2 cut(s)	94, 165
Fnu4HI	GCNGC	5 cut(s)	100, 103, 260, 604, 746
FokI	GGATG	3 cut(s)	326, 401, 544
Fsp4HI	GCNGC	5 cut(s)	100, 103, 260, 604, 746
FspBI	CTAG	3 cut(s)	458, 549, 654
GluI	GCNGC	5 cut(s)	100, 103, 260, 604, 746
GsuI	CTGGAG	1 cut(s)	371
HaeIII	GGCC	3 cut(s)	47, 625, 658
HapII	CCGG	1 cut(s)	321
HgaI	GACGC	2 cut(s)	94, 788
Hin1I	GRCGYC	1 cut(s)	780
Hin1II	CATG	4 cut(s)	144, 248, 301, 344
HindIII	AAGCTT	2 cut(s)	120, 758
HinfI	GANTC	6 cut(s)	5, 71, 136, 209, 329, 353
HpaII	CCGG	1 cut(s)	321
HphI	GGTGA	2 cut(s)	242, 788
Hpy188I	TCNGA	6 cut(s)	66, 76, 208, 310, 334, 364
Hpy188III	TCNNGA	2 cut(s)	155, 794
HpyAV	CCTTC	4 cut(s)	51, 593, 639, 791
HpyCH4III	ACNGT	2 cut(s)	374, 686
HpyCH4IV	ACGT	1 cut(s)	81
HpyCH4V	TGCA	5 cut(s)	166, 262, 272, 301, 745
HpyF10VI	GCNNNNNNNGC	1 cut(s)	751
HpyF3I	CTNAG	1 cut(s)	363
HpySE526I	ACGT	1 cut(s)	81
Hsp92I	GRCGYC	1 cut(s)	780
Hsp92II	CATG	4 cut(s)	144, 248, 301, 344
KpnI	GGTACC	1 cut(s)	257
Kzo9I	GATC	7 cut(s)	66, 334, 417, 461, 551, 568, 826
LmnI	GCTCC	2 cut(s)	169, 397
Lsp1109I	GCAGC	3 cut(s)	89, 246, 757
LweI	GCATC	4 cut(s)	68, 310, 379, 683
MabI	ACCWGGT	1 cut(s)	810
MaeI	CTAG	3 cut(s)	458, 549, 654
MaeII	ACGT	1 cut(s)	81
MaeIII	GTNAC	2 cut(s)	106, 776
MalI	GATC	7 cut(s)	68, 336, 419, 463, 553, 570, 828
MbiI	CCGCTC	1 cut(s)	172
MboI	GATC	7 cut(s)	66, 334, 417, 461, 551, 568, 826
MboII	GAAGA	5 cut(s)	36, 348, 455, 485, 758
MfeI	CAATTG	1 cut(s)	130
MflI	RGATCY	2 cut(s)	417, 461
MhlI	GDGCHC	1 cut(s)	733
MluCI	AATT	3 cut(s)	130, 263, 718
MlyI	GAGTC	2 cut(s)	14, 362
MmeI	TCCRAC	1 cut(s)	157
MnlI	CCTC	9 cut(s)	243, 304, 379, 405, 441, 462, 493, 636, 664
Mph1103I	ATGCAT	1 cut(s)	303
MroXI	GAANNNNTTC	1 cut(s)	122
MseI	TTAA	1 cut(s)	740
MslI	CAYNNNNRTG	1 cut(s)	838
MspA1I	CMGCKG	2 cut(s)	99, 259
MspI	CCGG	1 cut(s)	321
MspR9I	CCNGG	2 cut(s)	774, 812
MunI	CAATTG	1 cut(s)	130
Mva1269I	GAATGC	1 cut(s)	272
MvaI	CCWGG	2 cut(s)	774, 812
MwoI	GCNNNNNNNGC	1 cut(s)	751
NdeII	GATC	7 cut(s)	66, 334, 417, 461, 551, 568, 826
NlaIII	CATG	4 cut(s)	144, 248, 301, 344
NlaIV	GGNNCC	3 cut(s)	255, 319, 806
NmuCI	GTSAC	2 cut(s)	106, 776
NsiI	ATGCAT	1 cut(s)	303
NspI	RCATGY	1 cut(s)	301
NspV	TTCGAA	1 cut(s)	22
PaeI	GCATGC	1 cut(s)	301
PcsI	WCGNNNNNNNCGW	1 cut(s)	87
PctI	GAATGC	1 cut(s)	272
PdmI	GAANNNNTTC	1 cut(s)	122
PfeI	GAWTC	4 cut(s)	71, 136, 209, 329
PflMI	CCANNNNNTGG	3 cut(s)	146, 665, 814
PkrI	GCNGC	5 cut(s)	101, 104, 261, 605, 747
PleI	GAGTC	2 cut(s)	13, 361
PpsI	GAGTC	2 cut(s)	13, 361
Psp1406I	AACGTT	1 cut(s)	81
Psp6I	CCWGG	2 cut(s)	772, 810
PspGI	CCWGG	2 cut(s)	772, 810
PspN4I	GGNNCC	3 cut(s)	255, 319, 806
PstNI	CAGNNNCTG	2 cut(s)	102, 218
PsuI	RGATCY	2 cut(s)	417, 461
RsaI	GTAC	2 cut(s)	255, 559
RsaNI	GTAC	2 cut(s)	254, 558
RseI	CAYNNNNRTG	1 cut(s)	838
SaqAI	TTAA	1 cut(s)	740
SatI	GCNGC	5 cut(s)	100, 103, 260, 604, 746
Sau3AI	GATC	7 cut(s)	66, 334, 417, 461, 551, 568, 826
ScaI	AGTACT	1 cut(s)	559
SchI	GAGTC	2 cut(s)	14, 362
ScrFI	CCNGG	2 cut(s)	774, 812
SduI	GDGCHC	1 cut(s)	733
SetI	ASST	9 cut(s)	84, 124, 199, 220, 550, 585, 762, 778, 816
SexAI	ACCWGGT	1 cut(s)	810
SfaNI	GCATC	4 cut(s)	68, 310, 379, 683
SfuI	TTCGAA	1 cut(s)	22
SmiMI	CAYNNNNRTG	1 cut(s)	838
SmlI	CTYRAG	1 cut(s)	543
SmoI	CTYRAG	1 cut(s)	543
SphI	GCATGC	1 cut(s)	301
Sse9I	AATT	3 cut(s)	130, 263, 718
SsiI	CCGC	6 cut(s)	87, 99, 150, 172, 257, 603
SspMI	CTAG	3 cut(s)	458, 549, 654
StyD4I	CCNGG	2 cut(s)	772, 810
StyI	CCWWGG	1 cut(s)	653
TaaI	ACNGT	2 cut(s)	374, 686
TaiI	ACGT	1 cut(s)	84
TaqI	TCGA	4 cut(s)	22, 69, 156, 829
TasI	AATT	3 cut(s)	130, 263, 718
TatI	WGTACW	1 cut(s)	557
TauI	GCSGC	2 cut(s)	102, 606
TfiI	GAWTC	4 cut(s)	71, 136, 209, 329
Tru1I	TTAA	1 cut(s)	740
Tru9I	TTAA	1 cut(s)	740
TseFI	GTSAC	2 cut(s)	106, 776
TseI	GCWGC	3 cut(s)	102, 259, 745
Tsp45I	GTSAC	2 cut(s)	106, 776
TspDTI	ATGAA	4 cut(s)	265, 348, 548, 778
Van91I	CCANNNNNTGG	3 cut(s)	146, 665, 814
XceI	RCATGY	1 cut(s)	301
XmaJI	CCTAGG	1 cut(s)	653
XmnI	GAANNNNTTC	1 cut(s)	122
XspI	CTAG	3 cut(s)	458, 549, 654
ZrmI	AGTACT	1 cut(s)	559
Zsp2I	ATGCAT	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.