Rh6AG319300

Cupin-like domain

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Forward (+)
51877435 .. 51907353
29919 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG319300.1

Sequence Viewer

Length: 1383 bp
ATGGAGGAGTCCCTGCGAATTCGAAGATTGGAGGAAGTTCCTCCGGCCAAAGACTTCACCGCTCGGATTGAATCCAGGAATATTCCGGCGGTTATCAAGGGCTGCGTTAAAGATTGGGAGGCTGTTTCCAAGTGGAATCCATCGAATGGTGGCCTGGAATATTTGCAGGTACCGATAATCAGTACTGAAAATGAAGAGAGGGTTCAGTTGGAAACTTTGAGGGAAGATATTCAAATGCCTGCATTTTTGGAGGATAAATCACTAATTTCTGTTAACCTCTGGATGAACAATGCTCAAGCTAGATCAAGCACTCACTATGATCCACACCATAACCTTCTCTGCATAGTTTCTGGCTGTAAACAAGTGGTTTTATGGCCTCCTTCAGCAACTCCGGTGTTATACCCTATGCCAATATATGGGGAGGCATCAAATCATAGTTCTGTTCCTTTAGACAACCTTGACTTTTCAAATTATCCAAGAGCAGAATCTTCAATGGAGTACTCGCAGAAGGTTATTCTTCATGCAGGGGATGCATTATTTATTCCTGAAGGCTGGTTCCACCAGGTGGATAGTGATGATCTGACAATCGCTGTCAACTTTTGGTGGCAATCAAACATAATGTCATGCTTGTCAGAACACATGGATGCATATTATTTGCGCGTACTATTAAGAAGAATGACAGTTCGAGAAATGAACCAAGTGCTACCTAAAGCTTCTTCAGTGGAAATGGCGAACACAAAGAGGCATGCATGTAAGCTGCTTAATAACGGACAAGTAGATCAGAATGACAAGGATTTGGATCAGGCGAGTGAGAGGAAGGATCTTGAAGGAAAGGAGCTAAAACAAGAAACTACTTTGCATGAATTGGAACCGGTTGCCGTCCATGCTCTTCATGAACTTGTTTCTTTAGTTCACAGTCATGTCAATGCTGCAGAGCAAAGAGAACCGGAGCAATCCACTTCAACAACTGATTCTGCACTCAGTGTCAAGGACAAGGGTAGCAAAGTTGTGAGAGTGCATGCATTTAGGTTGGAAGATGACCCAGTCGCTAACATTATTTGGACTCTTCCGCCATGCACCCTTCAACGCGTACTTCTTGCCATGGTGAAAAGTTTCCCAAGAACTTTGGAGGGTTTAATACTGCACATGCTTACACCAGTGGGAGCAGAAGTGCTTACACGTAAATTTGAAGAAATGGATGACCTGAACACCAAGGAAGATCGGAACAGATTCTACCAAGTTTTCTATGAATCATTCAACGACCAATTTGCTGCAATGGATGCAATTCTGAATGGAAAGGAATTATTTGCCCTCCAGGCATACAAGAATGTGTTAGATAAGAACATAGGAGTAGATTGGGGTGGGCCAAGACCAGTTGTGTGA

Protein Analysis

460

Amino Acids

52.35

Weight (kDa)

5.28

Isoelectric Point (pI)

52.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_8 PF13621 69 - 205 1.4e-42 Cupin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 157
Acc65I GGTACC 1 cut(s) 169
AccB1I GGYRCC 1 cut(s) 169
AccB7I CCANNNNNTGG 3 cut(s) 146, 416, 565
AccBSI CCGCTC 1 cut(s) 62
AccII CGCG 2 cut(s) 660, 1089
AciI CCGC 3 cut(s) 60, 89, 1070
AclWI GGATC 3 cut(s) 314, 807, 828
AcoI YGGCCR 1 cut(s) 45
AcsI RAATTY 2 cut(s) 18, 1184
AcuI CTGAAG 3 cut(s) 366, 567, 702
AdeI CACNNNGTG 2 cut(s) 565, 983
AfaI GTAC 5 cut(s) 171, 184, 500, 663, 1092
AfiI CCNNNNNNNGG 3 cut(s) 146, 416, 565
AflIII ACRYGT 2 cut(s) 1087, 1178
AgeI ACCGGT 1 cut(s) 871
AgsI TTSAA 9 cut(s) 71, 233, 468, 492, 827, 963, 1085, 1190, 1258
AjnI CCWGG 4 cut(s) 74, 153, 561, 1314
AluBI AGCT 4 cut(s) 299, 713, 757, 838
AluI AGCT 4 cut(s) 299, 713, 757, 838
AlwI GGATC 3 cut(s) 314, 807, 828
AoxI GGCC 4 cut(s) 45, 151, 374, 1364
ApeKI GCWGC 4 cut(s) 102, 757, 929, 1271
ApoI RAATTY 2 cut(s) 18, 1184
ArsI GACNNNNNNTTYG 2 cut(s) 605, 637
AsiGI ACCGGT 1 cut(s) 871
Asp700I GAANNNNTTC 3 cut(s) 228, 1112, 1229
Asp718I GGTACC 1 cut(s) 169
AspLEI GCGC 1 cut(s) 660
AspS9I GGNCC 1 cut(s) 1364
AsuHPI GGTGA 2 cut(s) 49, 1117
AsuII TTCGAA 1 cut(s) 22
BanI GGYRCC 1 cut(s) 169
BbvI GCAGC 4 cut(s) 89, 744, 916, 1258
BccI CCATC 1 cut(s) 148
BceAI ACGGC 1 cut(s) 863
BcgI CGANNNNNNTGC 2 cut(s) 1250, 1284
BciT130I CCWGG 4 cut(s) 76, 155, 563, 1316
BfaI CTAG 1 cut(s) 300
BfmI CTRYAG 1 cut(s) 930
BfuAI ACCTGC 1 cut(s) 157
BglI GCCNNNNNGGC 1 cut(s) 1316
BisI GCNGC 4 cut(s) 103, 758, 930, 1272
BlsI GCNGC 4 cut(s) 104, 759, 931, 1273
BmcAI AGTACT 2 cut(s) 184, 500
Bme1390I CCNGG 4 cut(s) 76, 155, 563, 1316
BmgT120I GGNCC 1 cut(s) 1364
BmiI GGNNCC 3 cut(s) 171, 557, 870
BmrFI CCNGG 4 cut(s) 76, 155, 563, 1316
BmrI ACTGGG 1 cut(s) 1037
BmsI GCATC 4 cut(s) 434, 520, 634, 1270
BmuI ACTGGG 1 cut(s) 1037
BpmI CTGGAG 1 cut(s) 1298
Bpu14I TTCGAA 1 cut(s) 22
BpuEI CTTGAG 1 cut(s) 279
BsaAI YACGTR 1 cut(s) 1181
BsaBI GATNNNNATC 1 cut(s) 798
BsaJI CCNNGG 2 cut(s) 1101, 1212
BsaWI WCCGGW 3 cut(s) 391, 871, 946
BsaXI ACNNNNNCTCC 2 cut(s) 1155, 1185
Bsc4I CCNNNNNNNGG 3 cut(s) 146, 416, 565
Bse118I RCCGGY 1 cut(s) 871
Bse1I ACTGG 3 cut(s) 1043, 1157, 1373
Bse3DI GCAATG 1 cut(s) 1281
Bse8I GATNNNNATC 1 cut(s) 798
BseBI CCWGG 4 cut(s) 76, 155, 563, 1316
BseDI CCNNGG 2 cut(s) 1101, 1212
BseGI GGATG 5 cut(s) 288, 535, 649, 1204, 1285
BseJI GATNNNNATC 1 cut(s) 798
BseLI CCNNNNNNNGG 3 cut(s) 146, 416, 565
BseMI GCAATG 1 cut(s) 1281
BseMII CTCAG 1 cut(s) 994
BseNI ACTGG 3 cut(s) 1043, 1157, 1373
BseRI GAGGAG 1 cut(s) 20
BseXI GCAGC 4 cut(s) 89, 744, 916, 1258
BsgI GTGCAG 2 cut(s) 960, 1127
Bsh1236I CGCG 2 cut(s) 660, 1089
BshFI GGCC 4 cut(s) 47, 153, 376, 1366
BshNI GGYRCC 1 cut(s) 169
BshTI ACCGGT 1 cut(s) 871
BsiSI CCGG 5 cut(s) 44, 86, 392, 872, 947
BslI CCNNNNNNNGG 3 cut(s) 146, 416, 565
BsnI GGCC 4 cut(s) 47, 153, 376, 1366
Bsp119I TTCGAA 1 cut(s) 22
Bsp143I GATC 7 cut(s) 302, 319, 577, 778, 799, 820, 1219
Bsp19I CCATGG 1 cut(s) 1101
BspACI CCGC 3 cut(s) 60, 89, 1070
BspANI GGCC 4 cut(s) 47, 153, 376, 1366
BspCNI CTCAG 1 cut(s) 993
BspFNI CGCG 2 cut(s) 660, 1089
BspHI TCATGA 1 cut(s) 892
BspLI GGNNCC 3 cut(s) 171, 557, 870
BspMAI CTGCAG 1 cut(s) 934
BspMI ACCTGC 1 cut(s) 157
BspPI GGATC 3 cut(s) 314, 807, 828
BspQI GCTCTTC 1 cut(s) 894
BspT104I TTCGAA 1 cut(s) 22
BspT107I GGYRCC 1 cut(s) 169
BsrBI CCGCTC 1 cut(s) 62
BsrDI GCAATG 1 cut(s) 1281
BsrFI RCCGGY 1 cut(s) 871
BsrI ACTGG 3 cut(s) 1043, 1157, 1373
BssAI RCCGGY 1 cut(s) 871
BssECI CCNNGG 2 cut(s) 1101, 1212
BssMI GATC 7 cut(s) 302, 319, 577, 778, 799, 820, 1219
BssT1I CCWWGG 2 cut(s) 1101, 1212
Bst2UI CCWGG 4 cut(s) 76, 155, 563, 1316
Bst4CI ACNGT 2 cut(s) 682, 917
Bst6I CTCTTC 3 cut(s) 189, 894, 1071
BstAPI GCANNNNNTGC 2 cut(s) 530, 1280
BstBAI YACGTR 1 cut(s) 1181
BstBI TTCGAA 1 cut(s) 22
BstC8I GCNNGC 3 cut(s) 240, 747, 1020
BstDEI CTNAG 1 cut(s) 980
BstDSI CCRYGG 1 cut(s) 1101
BstF5I GGATG 5 cut(s) 288, 535, 649, 1204, 1285
BstFNI CGCG 2 cut(s) 660, 1089
BstHHI GCGC 1 cut(s) 660
BstKTI GATC 7 cut(s) 305, 322, 580, 781, 802, 823, 1222
BstMBI GATC 7 cut(s) 302, 319, 577, 778, 799, 820, 1219
BstMWI GCNNNNNNNGC 4 cut(s) 530, 884, 1280, 1316
BstNI CCWGG 4 cut(s) 76, 155, 563, 1316
BstNSI RCATGY 4 cut(s) 749, 753, 1022, 1150
BstSCI CCNGG 4 cut(s) 74, 153, 561, 1314
BstSFI CTRYAG 1 cut(s) 930
BstUI CGCG 2 cut(s) 660, 1089
BstV1I GCAGC 4 cut(s) 89, 744, 916, 1258
BstX2I RGATCY 1 cut(s) 820
BstYI RGATCY 1 cut(s) 820
BsuRI GGCC 4 cut(s) 47, 153, 376, 1366
BtgI CCRYGG 1 cut(s) 1101
BtsCI GGATG 5 cut(s) 288, 535, 649, 1204, 1285
BtsIMutI CAGTG 3 cut(s) 726, 988, 1164
BveI ACCTGC 1 cut(s) 157
Cac8I GCNNGC 3 cut(s) 240, 747, 1020
CciI TCATGA 1 cut(s) 892
CfoI GCGC 1 cut(s) 660
Cfr10I RCCGGY 1 cut(s) 871
Cfr13I GGNCC 1 cut(s) 1364
CsiI ACCWGGT 1 cut(s) 561
Csp6I GTAC 5 cut(s) 170, 183, 499, 662, 1091
CspAI ACCGGT 1 cut(s) 871
CviQI GTAC 5 cut(s) 170, 183, 499, 662, 1091
DdeI CTNAG 1 cut(s) 980
DpnI GATC 7 cut(s) 304, 321, 579, 780, 801, 822, 1221
DpnII GATC 7 cut(s) 302, 319, 577, 778, 799, 820, 1219
DraIII CACNNNGTG 2 cut(s) 565, 983
EaeI YGGCCR 1 cut(s) 45
Eam1104I CTCTTC 3 cut(s) 189, 894, 1071
EarI CTCTTC 3 cut(s) 189, 894, 1071
EciI GGCGGA 1 cut(s) 1059
Eco130I CCWWGG 2 cut(s) 1101, 1212
Eco57I CTGAAG 3 cut(s) 366, 567, 702
EcoRI GAATTC 1 cut(s) 18
EcoRII CCWGG 4 cut(s) 74, 153, 561, 1314
EcoT14I CCWWGG 2 cut(s) 1101, 1212
EcoT22I ATGCAT 4 cut(s) 535, 649, 751, 1024
ErhI CCWWGG 2 cut(s) 1101, 1212
Fnu4HI GCNGC 4 cut(s) 103, 758, 930, 1272
FokI GGATG 5 cut(s) 295, 542, 656, 1211, 1292
Fsp4HI GCNGC 4 cut(s) 103, 758, 930, 1272
FspBI CTAG 1 cut(s) 300
GlaI GCGC 1 cut(s) 659
GluI GCNGC 4 cut(s) 103, 758, 930, 1272
GsuI CTGGAG 1 cut(s) 1298
HaeIII GGCC 4 cut(s) 47, 153, 376, 1366
HapII CCGG 5 cut(s) 44, 86, 392, 872, 947
HhaI GCGC 1 cut(s) 660
Hin6I GCGC 1 cut(s) 658
HinP1I GCGC 1 cut(s) 658
HincII GTYRAC 2 cut(s) 274, 595
HindII GTYRAC 2 cut(s) 274, 595
HindIII AAGCTT 1 cut(s) 711
HinfI GANTC 8 cut(s) 8, 71, 136, 485, 971, 1063, 1230, 1250
HpaI GTTAAC 1 cut(s) 274
HpaII CCGG 5 cut(s) 44, 86, 392, 872, 947
HphI GGTGA 2 cut(s) 49, 1117
Hpy166II GTNNAC 4 cut(s) 274, 359, 595, 913
Hpy188I TCNGA 6 cut(s) 66, 582, 634, 783, 1224, 1290
Hpy188III TCNNGA 5 cut(s) 280, 545, 686, 824, 893
Hpy8I GTNNAC 4 cut(s) 274, 359, 595, 913
HpyAV CCTTC 7 cut(s) 344, 390, 502, 542, 811, 821, 1091
HpyCH4III ACNGT 2 cut(s) 682, 917
HpyCH4IV ACGT 1 cut(s) 1180
HpyF10VI GCNNNNNNNGC 4 cut(s) 530, 884, 1280, 1316
HpyF3I CTNAG 1 cut(s) 980
HpySE526I ACGT 1 cut(s) 1180
HspAI GCGC 1 cut(s) 658
KpnI GGTACC 1 cut(s) 173
KspAI GTTAAC 1 cut(s) 274
Kzo9I GATC 7 cut(s) 302, 319, 577, 778, 799, 820, 1219
LguI GCTCTTC 1 cut(s) 894
LmnI GCTCC 3 cut(s) 835, 949, 1163
Lsp1109I GCAGC 4 cut(s) 89, 744, 916, 1258
LweI GCATC 4 cut(s) 434, 520, 634, 1270
MabI ACCWGGT 1 cut(s) 561
MaeI CTAG 1 cut(s) 300
MaeII ACGT 1 cut(s) 1180
MalI GATC 7 cut(s) 304, 321, 579, 780, 801, 822, 1221
MbiI CCGCTC 1 cut(s) 62
MboI GATC 7 cut(s) 302, 319, 577, 778, 799, 820, 1219
MflI RGATCY 1 cut(s) 820
MluCI AATT 8 cut(s) 18, 264, 469, 863, 1184, 1265, 1284, 1301
MluI ACGCGT 1 cut(s) 1087
MlyI GAGTC 2 cut(s) 17, 1057
MmeI TCCRAC 2 cut(s) 189, 1011
Mph1103I ATGCAT 4 cut(s) 535, 649, 751, 1024
MroXI GAANNNNTTC 3 cut(s) 228, 1112, 1229
MseI TTAA 5 cut(s) 108, 273, 668, 762, 1136
MslI CAYNNNNRTG 3 cut(s) 642, 918, 924
MspI CCGG 5 cut(s) 44, 86, 392, 872, 947
MspR9I CCNGG 4 cut(s) 76, 155, 563, 1316
MvaI CCWGG 4 cut(s) 76, 155, 563, 1316
MvnI CGCG 2 cut(s) 660, 1089
MwoI GCNNNNNNNGC 4 cut(s) 530, 884, 1280, 1316
NcoI CCATGG 1 cut(s) 1101
NdeII GATC 7 cut(s) 302, 319, 577, 778, 799, 820, 1219
NlaIV GGNNCC 3 cut(s) 171, 557, 870
NsiI ATGCAT 4 cut(s) 535, 649, 751, 1024
NspI RCATGY 4 cut(s) 749, 753, 1022, 1150
NspV TTCGAA 1 cut(s) 22
PaeI GCATGC 2 cut(s) 749, 1022
PagI TCATGA 1 cut(s) 892
PciSI GCTCTTC 1 cut(s) 894
PdmI GAANNNNTTC 3 cut(s) 228, 1112, 1229
PfeI GAWTC 6 cut(s) 71, 136, 485, 971, 1230, 1250
PflFI GACNNNGTC 1 cut(s) 1043
PflMI CCANNNNNTGG 3 cut(s) 146, 416, 565
PfoI TCCNGGA 1 cut(s) 74
PinAI ACCGGT 1 cut(s) 871
PkrI GCNGC 4 cut(s) 104, 759, 931, 1273
PleI GAGTC 2 cut(s) 16, 1057
PpsI GAGTC 2 cut(s) 16, 1057
Ppu21I YACGTR 1 cut(s) 1181
Psp6I CCWGG 4 cut(s) 74, 153, 561, 1314
PspGI CCWGG 4 cut(s) 74, 153, 561, 1314
PspN4I GGNNCC 3 cut(s) 171, 557, 870
PspPI GGNCC 1 cut(s) 1364
PsrI GAACNNNNNNTAC 2 cut(s) 1217, 1249
PstI CTGCAG 1 cut(s) 934
PsuI RGATCY 1 cut(s) 820
PsyI GACNNNGTC 1 cut(s) 1043
RsaI GTAC 5 cut(s) 171, 184, 500, 663, 1092
RsaNI GTAC 5 cut(s) 170, 183, 499, 662, 1091
RseI CAYNNNNRTG 3 cut(s) 642, 918, 924
SapI GCTCTTC 1 cut(s) 894
SaqAI TTAA 5 cut(s) 108, 273, 668, 762, 1136
SatI GCNGC 4 cut(s) 103, 758, 930, 1272
Sau3AI GATC 7 cut(s) 302, 319, 577, 778, 799, 820, 1219
Sau96I GGNCC 1 cut(s) 1364
ScaI AGTACT 2 cut(s) 184, 500
SchI GAGTC 2 cut(s) 17, 1057
ScrFI CCNGG 4 cut(s) 76, 155, 563, 1316
SexAI ACCWGGT 1 cut(s) 561
SfaNI GCATC 4 cut(s) 434, 520, 634, 1270
SfcI CTRYAG 1 cut(s) 930
SfuI TTCGAA 1 cut(s) 22
SmiMI CAYNNNNRTG 3 cut(s) 642, 918, 924
SmlI CTYRAG 1 cut(s) 294
SmoI CTYRAG 1 cut(s) 294
SphI GCATGC 2 cut(s) 749, 1022
Sse9I AATT 8 cut(s) 18, 264, 469, 863, 1184, 1265, 1284, 1301
SsiI CCGC 3 cut(s) 60, 89, 1070
SspI AATATT 2 cut(s) 82, 161
SspMI CTAG 1 cut(s) 300
StyD4I CCNGG 4 cut(s) 74, 153, 561, 1314
StyI CCWWGG 2 cut(s) 1101, 1212
TaaI ACNGT 2 cut(s) 682, 917
TaiI ACGT 1 cut(s) 1183
TaqI TCGA 3 cut(s) 22, 143, 685
TasI AATT 8 cut(s) 18, 264, 469, 863, 1184, 1265, 1284, 1301
TatI WGTACW 2 cut(s) 182, 498
TfiI GAWTC 6 cut(s) 71, 136, 485, 971, 1230, 1250
Tru1I TTAA 5 cut(s) 108, 273, 668, 762, 1136
Tru9I TTAA 5 cut(s) 108, 273, 668, 762, 1136
TscAI CASTG 3 cut(s) 726, 988, 1164
TseI GCWGC 4 cut(s) 102, 757, 929, 1271
TspDTI ATGAA 8 cut(s) 207, 299, 509, 707, 876, 881, 909, 1263
TspGWI ACGGA 1 cut(s) 783
TspRI CASTG 3 cut(s) 726, 988, 1164
Tth111I GACNNNGTC 1 cut(s) 1043
Van91I CCANNNNNTGG 3 cut(s) 146, 416, 565
XapI RAATTY 2 cut(s) 18, 1184
XceI RCATGY 4 cut(s) 749, 753, 1022, 1150
XmnI GAANNNNTTC 3 cut(s) 228, 1112, 1229
XspI CTAG 1 cut(s) 300
ZrmI AGTACT 2 cut(s) 184, 500
Zsp2I ATGCAT 4 cut(s) 535, 649, 751, 1024
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.