Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0001794

Physical Location & Seq

Genomic Coordinates Forward (+)

51968595 .. 51975904

Gene Structure 7310 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG332300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGGAGGAGTCTCTGCGAATTCGAAGATTGGAGGAAGTTCCTCCGGCCAAAGACTTCACCACTCGGATTGAATCCAGGAATATTCCGGCGGTTATCAAGGGCTGCGTTAAAGATTGGGGAGCTGTTTCCAAGTGGAATCCATCGAATGGCGGCCTGGAATATTTGCAGGAACGAGTCGGATTGTGTGTTGTGGAGGCTATGCTATCTAGTTTCGCACCTGTCTTCTACGGCGATCTTAGAAGTCATGAGAGGGTACCACTGCCATTTTCTGCCTTCATTCGTCTATGTAGACTACGCATGCATCATGCAGAGGATGGTTCTGGTGCTTATTCTGAATCGGAACGGACTGGGCTGCTAGGGCCTGAATCTGAGCATGACTGTAAGCCCTATGAGGATGCTCCTCAACAAATCTATTTAGCACAGGTACCGATAATCAGTACTGAAAATGAAGAGAGGGTTCAGTTGGAAACTTTGAGGGAAGATATTCAAATGAAAAGTTTCCCAAGAACTTTGGATGGTTTAATACTGCACATGCTTACACCAGTGGGAGCAGAAGTGCTTACACGTAAATTTGAAGAAATGGATGACCTGAACACCAAGGAAGATCGGAACAGATTCTACCAAGTTTTCTATGAATCATTCAACGACCAATTTGCTGCAATGGATGCAATTCTGAATGGAAAGGAATTATTTGCCCTCCAGGGTGAAGCTACCAATACCAAAGCGAAAAAGGCTGTGCTGTGGGGATTTTCTGCACAGAAATTGATAAAGAGCAACTCCATCAACGAAGAAAAGGAAGAAGAAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000086 GO:0000278 GO:0003674 GO:0003682 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007049 GO:0008150 GO:0008152 GO:0008214 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016491 GO:0016569 GO:0016570 GO:0016577 GO:0016705 GO:0016706 GO:0019219 GO:0019222 GO:0019538 GO:0022402 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032451 GO:0032452 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044839 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051213 GO:0051252 GO:0051254 GO:0051276 GO:0051864 GO:0055114 GO:0060255 GO:0065007 GO:0070076 GO:0070544 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:1901564 GO:1902680 GO:1903047 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_8

Protein Analysis

269

Amino Acids

30.71

Weight (kDa)

5.01

Isoelectric Point (pI)

54.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_8	PF13621	18 - 191	6e-07	Cupin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001794)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26135 AT5G19840 AT5G19840
fragaria_vesca	FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940
malus_domestica	MD03G1258000.v1.1 MD03G1258100.v1.1 MD11G1278700.v1.1
prunus_persica	Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1
pyrus_communis	pycom03g20440 pycom11g24620 pycom11g24630
rosa_chinensis	RchiOBHm_Chr6g0289901 RchiOBHm_Chr6g0289911 RchiOBHm_Chr6g0289951
rosa_laevigata	RLG00000012257
rosa_multiflora	Rmu_sc0001312.1_g000002 Rmu_sc0023926.1_g000002
rosa_roxburghii	Rroxscaffold_7G00177480
rosa_rugosa	Rorug06G0208000
rosa_samantha	Rh6AG319300 Rh6BG326300 Rh6BG326400 Rh6CG332300 Rh6DG318000 Rh6DG318100
rosa_wichuraiana	Rw0G009780 Rw0G009800 Rw6G027540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	253, 424
AccB1I	GGYRCC	2 cut(s)	253, 424
AccB7I	CCANNNNNTGG	1 cut(s)	146
AccI	GTMKAC	1 cut(s)	289
AciI	CCGC	2 cut(s)	89, 150
AcoI	YGGCCR	1 cut(s)	45
AcsI	RAATTY	2 cut(s)	18, 569
AfaI	GTAC	3 cut(s)	255, 426, 439
AfiI	CCNNNNNNNGG	1 cut(s)	146
AflIII	ACRYGT	1 cut(s)	563
AgsI	TTSAA	4 cut(s)	71, 488, 575, 643
AjnI	CCWGG	3 cut(s)	74, 153, 699
AluBI	AGCT	2 cut(s)	122, 710
AluI	AGCT	2 cut(s)	122, 710
Alw26I	GTCTC	1 cut(s)	15
AoxI	GGCC	3 cut(s)	45, 151, 359
ApeKI	GCWGC	3 cut(s)	102, 352, 656
ApoI	RAATTY	2 cut(s)	18, 569
Asp700I	GAANNNNTTC	3 cut(s)	483, 497, 614
Asp718I	GGTACC	2 cut(s)	253, 424
AspS9I	GGNCC	1 cut(s)	359
AsuHPI	GGTGA	2 cut(s)	49, 716
AsuII	TTCGAA	1 cut(s)	22
BanI	GGYRCC	2 cut(s)	253, 424
BbsI	GAAGAC	1 cut(s)	214
BbvI	GCAGC	3 cut(s)	89, 339, 643
BccI	CCATC	4 cut(s)	148, 308, 509, 788
BceAI	ACGGC	1 cut(s)	244
BcgI	CGANNNNNNTGC	2 cut(s)	635, 669
BciT130I	CCWGG	3 cut(s)	76, 155, 701
BcoDI	GTCTC	1 cut(s)	15
BfaI	CTAG	2 cut(s)	207, 356
BisI	GCNGC	4 cut(s)	103, 151, 353, 657
BlsI	GCNGC	4 cut(s)	104, 152, 354, 658
BmcAI	AGTACT	1 cut(s)	439
Bme1390I	CCNGG	3 cut(s)	76, 155, 701
BmgT120I	GGNCC	1 cut(s)	359
BmiI	GGNNCC	2 cut(s)	255, 426
BmrFI	CCNGG	3 cut(s)	76, 155, 701
BmrI	ACTGGG	1 cut(s)	357
BmsI	GCATC	3 cut(s)	310, 385, 655
BmuI	ACTGGG	1 cut(s)	357
BpiI	GAAGAC	1 cut(s)	214
BpmI	CTGGAG	1 cut(s)	683
Bpu14I	TTCGAA	1 cut(s)	22
BsaAI	YACGTR	1 cut(s)	566
BsaJI	CCNNGG	2 cut(s)	597, 700
BsaXI	ACNNNNNCTCC	2 cut(s)	540, 570
Bsc4I	CCNNNNNNNGG	1 cut(s)	146
Bse1I	ACTGG	2 cut(s)	352, 542
Bse3DI	GCAATG	1 cut(s)	666
BseBI	CCWGG	3 cut(s)	76, 155, 701
BseDI	CCNNGG	2 cut(s)	597, 700
BseGI	GGATG	5 cut(s)	319, 400, 520, 589, 670
BseLI	CCNNNNNNNGG	1 cut(s)	146
BseMI	GCAATG	1 cut(s)	666
BseMII	CTCAG	1 cut(s)	360
BseNI	ACTGG	2 cut(s)	352, 542
BseRI	GAGGAG	2 cut(s)	20, 390
BseXI	GCAGC	3 cut(s)	89, 339, 643
BsgI	GTGCAG	2 cut(s)	512, 738
BshFI	GGCC	3 cut(s)	47, 153, 361
BshNI	GGYRCC	2 cut(s)	253, 424
BsiSI	CCGG	2 cut(s)	44, 86
BslI	CCNNNNNNNGG	1 cut(s)	146
BsmAI	GTCTC	1 cut(s)	15
BsnI	GGCC	3 cut(s)	47, 153, 361
Bsp119I	TTCGAA	1 cut(s)	22
Bsp143I	GATC	2 cut(s)	232, 604
BspACI	CCGC	2 cut(s)	89, 150
BspANI	GGCC	3 cut(s)	47, 153, 361
BspCNI	CTCAG	1 cut(s)	361
BspHI	TCATGA	1 cut(s)	244
BspLI	GGNNCC	2 cut(s)	255, 426
BspT104I	TTCGAA	1 cut(s)	22
BspT107I	GGYRCC	2 cut(s)	253, 424
BsrDI	GCAATG	1 cut(s)	666
BsrI	ACTGG	2 cut(s)	352, 542
BssECI	CCNNGG	2 cut(s)	597, 700
BssMI	GATC	2 cut(s)	232, 604
BssT1I	CCWWGG	1 cut(s)	597
Bst2UI	CCWGG	3 cut(s)	76, 155, 701
Bst4CI	ACNGT	1 cut(s)	380
Bst6I	CTCTTC	1 cut(s)	444
BstAPI	GCANNNNNTGC	1 cut(s)	665
BstBAI	YACGTR	1 cut(s)	566
BstBI	TTCGAA	1 cut(s)	22
BstC8I	GCNNGC	1 cut(s)	299
BstDEI	CTNAG	2 cut(s)	236, 369
BstF5I	GGATG	5 cut(s)	319, 400, 520, 589, 670
BstKTI	GATC	2 cut(s)	235, 607
BstMAI	GTCTC	1 cut(s)	15
BstMBI	GATC	2 cut(s)	232, 604
BstMWI	GCNNNNNNNGC	3 cut(s)	358, 665, 731
BstNI	CCWGG	3 cut(s)	76, 155, 701
BstNSI	RCATGY	2 cut(s)	301, 535
BstSCI	CCNGG	3 cut(s)	74, 153, 699
BstV1I	GCAGC	3 cut(s)	89, 339, 643
BstV2I	GAAGAC	1 cut(s)	214
BsuRI	GGCC	3 cut(s)	47, 153, 361
BtsCI	GGATG	5 cut(s)	319, 400, 520, 589, 670
BtsI	GCAGTG	1 cut(s)	257
BtsIMutI	CAGTG	2 cut(s)	257, 549
Cac8I	GCNNGC	1 cut(s)	299
CciI	TCATGA	1 cut(s)	244
Cfr13I	GGNCC	1 cut(s)	359
Csp6I	GTAC	3 cut(s)	254, 425, 438
CspCI	CAANNNNNGTGG	2 cut(s)	49, 84
CviAII	CATG	5 cut(s)	245, 298, 305, 374, 532
CviQI	GTAC	3 cut(s)	254, 425, 438
DdeI	CTNAG	2 cut(s)	236, 369
DpnI	GATC	2 cut(s)	234, 606
DpnII	GATC	2 cut(s)	232, 604
EaeI	YGGCCR	1 cut(s)	45
Eam1104I	CTCTTC	1 cut(s)	444
EarI	CTCTTC	1 cut(s)	444
Eco130I	CCWWGG	1 cut(s)	597
EcoO109I	RGGNCCY	1 cut(s)	359
EcoRI	GAATTC	1 cut(s)	18
EcoRII	CCWGG	3 cut(s)	74, 153, 699
EcoT14I	CCWWGG	1 cut(s)	597
EcoT22I	ATGCAT	1 cut(s)	303
ErhI	CCWWGG	1 cut(s)	597
FaeI	CATG	5 cut(s)	248, 301, 308, 377, 535
FaiI	YATR	9 cut(s)	200, 246, 286, 299, 306, 375, 390, 533, 633
FatI	CATG	5 cut(s)	244, 297, 304, 373, 531
FblI	GTMKAC	1 cut(s)	289
Fnu4HI	GCNGC	4 cut(s)	103, 151, 353, 657
FokI	GGATG	5 cut(s)	326, 407, 527, 596, 677
Fsp4HI	GCNGC	4 cut(s)	103, 151, 353, 657
FspBI	CTAG	2 cut(s)	207, 356
GluI	GCNGC	4 cut(s)	103, 151, 353, 657
GsuI	CTGGAG	1 cut(s)	683
HaeIII	GGCC	3 cut(s)	47, 153, 361
HapII	CCGG	2 cut(s)	44, 86
Hin1II	CATG	5 cut(s)	248, 301, 308, 377, 535
HinfI	GANTC	8 cut(s)	8, 71, 136, 174, 335, 365, 615, 635
HpaII	CCGG	2 cut(s)	44, 86
HphI	GGTGA	2 cut(s)	49, 716
Hpy166II	GTNNAC	1 cut(s)	290
Hpy188I	TCNGA	7 cut(s)	66, 179, 334, 340, 370, 609, 675
Hpy188III	TCNNGA	1 cut(s)	245
Hpy8I	GTNNAC	1 cut(s)	290
HpyAV	CCTTC	1 cut(s)	283
HpyCH4III	ACNGT	1 cut(s)	380
HpyCH4IV	ACGT	1 cut(s)	565
HpyCH4V	TGCA	7 cut(s)	166, 301, 308, 529, 659, 668, 755
HpyF10VI	GCNNNNNNNGC	3 cut(s)	358, 665, 731
HpyF3I	CTNAG	2 cut(s)	236, 369
HpySE526I	ACGT	1 cut(s)	565
Hsp92II	CATG	5 cut(s)	248, 301, 308, 377, 535
KpnI	GGTACC	2 cut(s)	257, 428
Kzo9I	GATC	2 cut(s)	232, 604
LmnI	GCTCC	3 cut(s)	119, 403, 548
Lsp1109I	GCAGC	3 cut(s)	89, 339, 643
LweI	GCATC	3 cut(s)	310, 385, 655
MaeI	CTAG	2 cut(s)	207, 356
MaeII	ACGT	1 cut(s)	565
MalI	GATC	2 cut(s)	234, 606
MboI	GATC	2 cut(s)	232, 604
MboII	GAAGA	8 cut(s)	36, 214, 461, 491, 587, 614, 800, 809
MluCI	AATT	6 cut(s)	18, 569, 650, 669, 686, 761
MlyI	GAGTC	2 cut(s)	17, 183
MmeI	TCCRAC	2 cut(s)	157, 444
Mph1103I	ATGCAT	1 cut(s)	303
MroXI	GAANNNNTTC	3 cut(s)	483, 497, 614
MseI	TTAA	2 cut(s)	108, 521
MspI	CCGG	2 cut(s)	44, 86
MspR9I	CCNGG	3 cut(s)	76, 155, 701
MvaI	CCWGG	3 cut(s)	76, 155, 701
MwoI	GCNNNNNNNGC	3 cut(s)	358, 665, 731
NdeII	GATC	2 cut(s)	232, 604
NlaIII	CATG	5 cut(s)	248, 301, 308, 377, 535
NlaIV	GGNNCC	2 cut(s)	255, 426
NsiI	ATGCAT	1 cut(s)	303
NspI	RCATGY	2 cut(s)	301, 535
NspV	TTCGAA	1 cut(s)	22
PaeI	GCATGC	1 cut(s)	301
PagI	TCATGA	1 cut(s)	244
PdmI	GAANNNNTTC	3 cut(s)	483, 497, 614
PfeI	GAWTC	6 cut(s)	71, 136, 335, 365, 615, 635
PflMI	CCANNNNNTGG	1 cut(s)	146
PfoI	TCCNGGA	1 cut(s)	74
PkrI	GCNGC	4 cut(s)	104, 152, 354, 658
PleI	GAGTC	2 cut(s)	16, 182
PpsI	GAGTC	2 cut(s)	16, 182
Ppu21I	YACGTR	1 cut(s)	566
Psp6I	CCWGG	3 cut(s)	74, 153, 699
PspGI	CCWGG	3 cut(s)	74, 153, 699
PspN4I	GGNNCC	2 cut(s)	255, 426
PspPI	GGNCC	1 cut(s)	359
PsrI	GAACNNNNNNTAC	2 cut(s)	602, 634
RsaI	GTAC	3 cut(s)	255, 426, 439
RsaNI	GTAC	3 cut(s)	254, 425, 438
SaqAI	TTAA	2 cut(s)	108, 521
SatI	GCNGC	4 cut(s)	103, 151, 353, 657
Sau3AI	GATC	2 cut(s)	232, 604
Sau96I	GGNCC	1 cut(s)	359
ScaI	AGTACT	1 cut(s)	439
SchI	GAGTC	2 cut(s)	17, 183
ScrFI	CCNGG	3 cut(s)	76, 155, 701
SetI	ASST	6 cut(s)	124, 220, 426, 568, 591, 712
SfaNI	GCATC	3 cut(s)	310, 385, 655
SfuI	TTCGAA	1 cut(s)	22
SphI	GCATGC	1 cut(s)	301
Sse9I	AATT	6 cut(s)	18, 569, 650, 669, 686, 761
SsiI	CCGC	2 cut(s)	89, 150
SspI	AATATT	2 cut(s)	82, 161
SspMI	CTAG	2 cut(s)	207, 356
StyD4I	CCNGG	3 cut(s)	74, 153, 699
StyI	CCWWGG	1 cut(s)	597
TaaI	ACNGT	1 cut(s)	380
TaiI	ACGT	1 cut(s)	568
TaqI	TCGA	2 cut(s)	22, 143
TasI	AATT	6 cut(s)	18, 569, 650, 669, 686, 761
TatI	WGTACW	1 cut(s)	437
TauI	GCSGC	1 cut(s)	153
TfiI	GAWTC	6 cut(s)	71, 136, 335, 365, 615, 635
Tru1I	TTAA	2 cut(s)	108, 521
Tru9I	TTAA	2 cut(s)	108, 521
TscAI	CASTG	2 cut(s)	264, 549
TseI	GCWGC	3 cut(s)	102, 352, 656
TspDTI	ATGAA	4 cut(s)	265, 462, 506, 648
TspGWI	ACGGA	1 cut(s)	358
TspRI	CASTG	2 cut(s)	264, 549
Van91I	CCANNNNNTGG	1 cut(s)	146
XapI	RAATTY	2 cut(s)	18, 569
XceI	RCATGY	2 cut(s)	301, 535
XmiI	GTMKAC	1 cut(s)	289
XmnI	GAANNNNTTC	3 cut(s)	483, 497, 614
XspI	CTAG	2 cut(s)	207, 356
ZrmI	AGTACT	1 cut(s)	439
Zsp2I	ATGCAT	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.