Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0003803

Physical Location & Seq

Genomic Coordinates Forward (+)

23167451 .. 23168547

Gene Structure 1097 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1142400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGGTGGATGGGCCTACATATGCACCCTTTGGTGGCATGCCCACATTTCATGGCTCCGTGCAATTGTCCACGGAGCGCTCATAATCCACCCGAAAGCCGGTCGATCCTTCCCCTTCCCCAAGCCCACCAAAGAAGTTCCCATCTTGTTAGGAGAGTGGTACAATGGCAATGTGGTTGACATTGAGGAAGAAGGCATGTCTAAAGGAATTGCTCCTAACATTTCAAATGCTTACACCATCAATGGACTTCCCGGCGATCTTTACGATTGCTCTCAAAATCAATCATATCAACTAAGTGTGGTGAGAGGAAAGACCTACCTGCTACGCTTAATTAACGATGGACTCAATACCCAGCTATTCTTCAAGATAACCAATCACAAGATGACAGTTGTCGCCATCGACGCTATCTACACCACTCCTTACGTTAGCGACATGGTGGTTACCGGACCTGGTCAGACCACCGACGTTCTTGTCAAATTCAATCAACCTATTGGATCTTATTACATGGCCGCCACTCCATACGCTAGTGCTAGTGGCGCCATCGACTTTGATAACTCAACCACCAGATCATTGTCTACAAGGGCTCCAATTCATCAACCACAATTATGCCCTCAATGCCCAACCCTTACGACAAGCCATTGGTCCATAAGTTCCTCAGCAATCTTACCAGCCTCACCAGTAGACCCAATGGGTCCCAGTCCCACTCAAGGTGGACGAGCACATGTTCGTGACAATCGGCGTCAACTTGGAGATGTGTCCAGAAAATGCCACGTGTCAGGGTCTCTTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0007275 GO:0008150 GO:0008152 GO:0009791 GO:0010035 GO:0010038 GO:0010228 GO:0016491 GO:0016722 GO:0022414 GO:0032501 GO:0032502 GO:0042221 GO:0046688 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0055114 GO:0061458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

264

Amino Acids

28.79

Weight (kDa)

8.56

Isoelectric Point (pI)

50.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu-oxidase	PF00394	45 - 189	1.8e-37	Multicopper oxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003803)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09220 AT3G09220
fragaria_vesca	FvH4_6g12410 FvH4_6g12430 FvH4_6g12430
malus_domestica	MD04G1142300.v1.1 MD04G1142400.v1.1 MD04G1142600.v1.1 MD04G1142900.v1.1 MD12G1157000.v1.1 MD12G1157100.v1.1 MD12G1157900.v1.1 MD16G1147100.v1.1
prunus_persica	Prupe.6G267700_v2.0.a1
pyrus_communis	pycom04g12930 pycom04g12940 pycom04g12950 pycom04g12960 pycom04g12970 pycom04g12980 pycom12g14940
rosa_chinensis	RchiOBHm_Chr3g0464241
rosa_laevigata	RLG00000024714 RLG00000036611
rosa_multiflora	Rmu_sc0005961.1_g000011 Rmu_sc0007811.1_g000009
rosa_roxburghii	Rroxscaffold_1G00005620 Rroxscaffold_6G00415910
rosa_rugosa	Rorug03G0071000
rosa_samantha	Rh3DG134200 Rh5AG501600 Rh5CG547100
rosa_wichuraiana	Rw3G010860 Rw5G046570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	470
Acc36I	ACCTGC	1 cut(s)	327
AccB1I	GGYRCC	1 cut(s)	536
AccI	GTMKAC	2 cut(s)	575, 681
AciI	CCGC	1 cut(s)	510
AclWI	GGATC	2 cut(s)	99, 502
AcoI	YGGCCR	1 cut(s)	507
AcsI	RAATTY	1 cut(s)	476
AcvI	CACGTG	1 cut(s)	772
AcyI	GRCGYC	2 cut(s)	537, 739
AfaI	GTAC	1 cut(s)	161
AfeI	AGCGCT	1 cut(s)	78
AfiI	CCNNNNNNNGG	3 cut(s)	33, 98, 707
AflIII	ACRYGT	2 cut(s)	721, 771
AgsI	TTSAA	4 cut(s)	225, 364, 481, 788
AjnI	CCWGG	1 cut(s)	448
AluBI	AGCT	1 cut(s)	355
AluI	AGCT	1 cut(s)	355
Alw21I	GWGCWC	1 cut(s)	721
Alw26I	GTCTC	1 cut(s)	786
AlwI	GGATC	2 cut(s)	99, 502
Aor51HI	AGCGCT	1 cut(s)	78
AoxI	GGCC	2 cut(s)	12, 507
ApoI	RAATTY	1 cut(s)	476
AspLEI	GCGC	2 cut(s)	79, 539
AspS9I	GGNCC	4 cut(s)	12, 446, 642, 692
AsuC2I	CCSGG	1 cut(s)	252
AsuHPI	GGTGA	2 cut(s)	313, 666
AvaII	GGWCC	3 cut(s)	446, 642, 692
BanI	GGYRCC	1 cut(s)	536
BanII	GRGCYC	1 cut(s)	586
BbrPI	CACGTG	1 cut(s)	772
Bbv12I	GWGCWC	1 cut(s)	721
BbvCI	CCTCAGC	1 cut(s)	655
BccI	CCATC	6 cut(s)	3, 149, 245, 332, 404, 548
BciT130I	CCWGG	1 cut(s)	450
BcnI	CCSGG	1 cut(s)	252
BcoDI	GTCTC	1 cut(s)	786
BfaI	CTAG	2 cut(s)	525, 531
BfoI	RGCGCY	2 cut(s)	80, 540
BfuAI	ACCTGC	1 cut(s)	327
BisI	GCNGC	1 cut(s)	510
BlsI	GCNGC	1 cut(s)	511
Bme1390I	CCNGG	2 cut(s)	252, 450
Bme18I	GGWCC	3 cut(s)	446, 642, 692
BmgT120I	GGNCC	4 cut(s)	12, 446, 642, 692
BmiI	GGNNCC	5 cut(s)	56, 538, 585, 693, 694
BmrFI	CCNGG	2 cut(s)	252, 450
BmrI	ACTGGG	1 cut(s)	690
BmuI	ACTGGG	1 cut(s)	690
BoxI	GACNNNNGTC	1 cut(s)	389
Bpu10I	CCTNAGC	1 cut(s)	655
BpuEI	CTTGAG	1 cut(s)	690
BpuMI	CCSGG	1 cut(s)	252
BsaAI	YACGTR	1 cut(s)	772
BsaHI	GRCGYC	2 cut(s)	537, 739
BsaI	GGTCTC	1 cut(s)	786
BsaJI	CCNNGG	1 cut(s)	70
BsaWI	WCCGGW	1 cut(s)	443
BsaXI	ACNNNNNCTCC	2 cut(s)	568, 598
Bsc4I	CCNNNNNNNGG	3 cut(s)	33, 98, 707
Bse118I	RCCGGY	1 cut(s)	98
Bse1I	ACTGG	2 cut(s)	677, 696
Bse3DI	GCAATG	1 cut(s)	175
BseBI	CCWGG	1 cut(s)	450
BseDI	CCNNGG	1 cut(s)	70
BseGI	GGATG	1 cut(s)	14
BseLI	CCNNNNNNNGG	3 cut(s)	33, 98, 707
BseMI	GCAATG	1 cut(s)	175
BseMII	CTCAG	1 cut(s)	669
BseNI	ACTGG	2 cut(s)	677, 696
BseYI	CCCAGC	1 cut(s)	351
Bsh1285I	CGRYCG	1 cut(s)	103
BshFI	GGCC	2 cut(s)	14, 509
BshNI	GGYRCC	1 cut(s)	536
BsiEI	CGRYCG	1 cut(s)	103
BsiHKAI	GWGCWC	1 cut(s)	721
BsiSI	CCGG	3 cut(s)	99, 252, 444
BslFI	GGGAC	2 cut(s)	678, 684
BslI	CCNNNNNNNGG	3 cut(s)	33, 98, 707
BsmAI	GTCTC	1 cut(s)	786
BsmFI	GGGAC	2 cut(s)	678, 684
BsnI	GGCC	2 cut(s)	14, 509
Bso31I	GGTCTC	1 cut(s)	786
Bsp1286I	GDGCHC	2 cut(s)	586, 721
Bsp143I	GATC	4 cut(s)	104, 256, 494, 566
BspACI	CCGC	1 cut(s)	510
BspANI	GGCC	2 cut(s)	14, 509
BspCNI	CTCAG	1 cut(s)	668
BspLI	GGNNCC	5 cut(s)	56, 538, 585, 693, 694
BspMI	ACCTGC	1 cut(s)	327
BspPI	GGATC	2 cut(s)	99, 502
BspT107I	GGYRCC	1 cut(s)	536
BspTNI	GGTCTC	1 cut(s)	786
BsrDI	GCAATG	1 cut(s)	175
BsrFI	RCCGGY	1 cut(s)	98
BsrI	ACTGG	2 cut(s)	677, 696
BssAI	RCCGGY	1 cut(s)	98
BssECI	CCNNGG	1 cut(s)	70
BssMI	GATC	4 cut(s)	104, 256, 494, 566
BssNI	GRCGYC	2 cut(s)	537, 739
Bst2UI	CCWGG	1 cut(s)	450
Bst4CI	ACNGT	1 cut(s)	388
Bst6I	CTCTTC	1 cut(s)	789
BstACI	GRCGYC	2 cut(s)	537, 739
BstBAI	YACGTR	1 cut(s)	772
BstC8I	GCNNGC	1 cut(s)	39
BstDEI	CTNAG	2 cut(s)	293, 655
BstDSI	CCRYGG	1 cut(s)	70
BstEII	GGTNACC	1 cut(s)	439
BstF5I	GGATG	1 cut(s)	14
BstH2I	RGCGCY	2 cut(s)	80, 540
BstHHI	GCGC	2 cut(s)	79, 539
BstKTI	GATC	4 cut(s)	107, 259, 497, 569
BstMAI	GTCTC	1 cut(s)	786
BstMBI	GATC	4 cut(s)	104, 256, 494, 566
BstMCI	CGRYCG	1 cut(s)	103
BstMWI	GCNNNNNNNGC	3 cut(s)	401, 536, 615
BstNI	CCWGG	1 cut(s)	450
BstNSI	RCATGY	3 cut(s)	41, 199, 725
BstPAI	GACNNNNGTC	1 cut(s)	389
BstPI	GGTNACC	1 cut(s)	439
BstSCI	CCNGG	2 cut(s)	250, 448
BstX2I	RGATCY	1 cut(s)	494
BstYI	RGATCY	1 cut(s)	494
BsuRI	GGCC	2 cut(s)	14, 509
BtgI	CCRYGG	1 cut(s)	70
BtsCI	GGATG	1 cut(s)	14
BveI	ACCTGC	1 cut(s)	327
Cac8I	GCNNGC	1 cut(s)	39
CfoI	GCGC	2 cut(s)	79, 539
Cfr10I	RCCGGY	1 cut(s)	98
Cfr13I	GGNCC	4 cut(s)	12, 446, 642, 692
CseI	GACGC	2 cut(s)	410, 728
CsiI	ACCWGGT	1 cut(s)	448
Csp6I	GTAC	1 cut(s)	160
CviAII	CATG	6 cut(s)	38, 51, 196, 433, 505, 722
CviJI	RGCY	9 cut(s)	14, 55, 98, 124, 355, 509, 584, 636, 671
CviKI_1	RGCY	9 cut(s)	14, 55, 98, 124, 355, 509, 584, 636, 671
CviQI	GTAC	1 cut(s)	160
DdeI	CTNAG	2 cut(s)	293, 655
DinI	GGCGCC	1 cut(s)	538
DpnI	GATC	4 cut(s)	106, 258, 496, 568
DpnII	GATC	4 cut(s)	104, 256, 494, 566
DrdI	GACNNNNNNGTC	1 cut(s)	470
DseDI	GACNNNNNNGTC	1 cut(s)	470
EaeI	YGGCCR	1 cut(s)	507
Eam1104I	CTCTTC	1 cut(s)	789
EarI	CTCTTC	1 cut(s)	789
Eco24I	GRGCYC	1 cut(s)	586
Eco31I	GGTCTC	1 cut(s)	786
Eco47I	GGWCC	3 cut(s)	446, 642, 692
Eco47III	AGCGCT	1 cut(s)	78
Eco72I	CACGTG	1 cut(s)	772
Eco91I	GGTNACC	1 cut(s)	439
EcoO109I	RGGNCCY	1 cut(s)	692
EcoO65I	GGTNACC	1 cut(s)	439
EcoRII	CCWGG	1 cut(s)	448
EcoT38I	GRGCYC	1 cut(s)	586
EgeI	GGCGCC	1 cut(s)	538
EheI	GGCGCC	1 cut(s)	538
FaeI	CATG	6 cut(s)	41, 54, 199, 436, 508, 725
FaqI	GGGAC	2 cut(s)	678, 684
FatI	CATG	6 cut(s)	37, 50, 195, 432, 504, 721
FauNDI	CATATG	1 cut(s)	20
FblI	GTMKAC	2 cut(s)	575, 681
Fnu4HI	GCNGC	1 cut(s)	510
FokI	GGATG	1 cut(s)	21
FriOI	GRGCYC	1 cut(s)	586
Fsp4HI	GCNGC	1 cut(s)	510
FspBI	CTAG	2 cut(s)	525, 531
GlaI	GCGC	2 cut(s)	78, 538
GluI	GCNGC	1 cut(s)	510
GsaI	CCCAGC	1 cut(s)	355
HaeII	RGCGCY	2 cut(s)	80, 540
HaeIII	GGCC	2 cut(s)	14, 509
HapII	CCGG	3 cut(s)	99, 252, 444
HgaI	GACGC	2 cut(s)	410, 728
HhaI	GCGC	2 cut(s)	79, 539
Hin1I	GRCGYC	2 cut(s)	537, 739
Hin1II	CATG	6 cut(s)	41, 54, 199, 436, 508, 725
Hin6I	GCGC	2 cut(s)	77, 537
HinP1I	GCGC	2 cut(s)	77, 537
HincII	GTYRAC	2 cut(s)	178, 743
HindII	GTYRAC	2 cut(s)	178, 743
HinfI	GANTC	1 cut(s)	342
HpaII	CCGG	3 cut(s)	99, 252, 444
HphI	GGTGA	2 cut(s)	313, 666
Hpy166II	GTNNAC	6 cut(s)	70, 178, 576, 682, 713, 743
Hpy188I	TCNGA	1 cut(s)	456
Hpy188III	TCNNGA	3 cut(s)	364, 728, 759
Hpy8I	GTNNAC	6 cut(s)	70, 178, 576, 682, 713, 743
Hpy99I	CGWCG	2 cut(s)	404, 467
HpyAV	CCTTC	3 cut(s)	118, 124, 185
HpyCH4III	ACNGT	1 cut(s)	388
HpyCH4IV	ACGT	3 cut(s)	423, 465, 771
HpyCH4V	TGCA	2 cut(s)	24, 62
HpyF10VI	GCNNNNNNNGC	3 cut(s)	401, 536, 615
HpyF3I	CTNAG	2 cut(s)	293, 655
HpySE526I	ACGT	3 cut(s)	423, 465, 771
Hsp92I	GRCGYC	2 cut(s)	537, 739
Hsp92II	CATG	6 cut(s)	41, 54, 199, 436, 508, 725
HspAI	GCGC	2 cut(s)	77, 537
KasI	GGCGCC	1 cut(s)	536
KflI	GGGWCCC	1 cut(s)	692
Kzo9I	GATC	4 cut(s)	104, 256, 494, 566
LmnI	GCTCC	4 cut(s)	60, 74, 217, 589
MabI	ACCWGGT	1 cut(s)	448
MaeI	CTAG	2 cut(s)	525, 531
MaeII	ACGT	3 cut(s)	423, 465, 771
MaeIII	GTNAC	2 cut(s)	439, 728
MalI	GATC	4 cut(s)	106, 258, 496, 568
MboI	GATC	4 cut(s)	104, 256, 494, 566
MboII	GAAGA	3 cut(s)	200, 352, 776
MfeI	CAATTG	1 cut(s)	63
MflI	RGATCY	1 cut(s)	494
MhlI	GDGCHC	2 cut(s)	586, 721
MluCI	AATT	6 cut(s)	63, 207, 330, 476, 588, 602
Mly113I	GGCGCC	1 cut(s)	537
MlyI	GAGTC	1 cut(s)	336
MnlI	CCTC	5 cut(s)	178, 299, 621, 664, 682
MseI	TTAA	2 cut(s)	329, 333
MslI	CAYNNNNRTG	2 cut(s)	604, 726
MspI	CCGG	3 cut(s)	99, 252, 444
MspR9I	CCNGG	2 cut(s)	252, 450
MunI	CAATTG	1 cut(s)	63
MvaI	CCWGG	1 cut(s)	450
MwoI	GCNNNNNNNGC	3 cut(s)	401, 536, 615
NarI	GGCGCC	1 cut(s)	537
NciI	CCSGG	1 cut(s)	252
NdeI	CATATG	1 cut(s)	20
NdeII	GATC	4 cut(s)	104, 256, 494, 566
NlaIII	CATG	6 cut(s)	41, 54, 199, 436, 508, 725
NlaIV	GGNNCC	5 cut(s)	56, 538, 585, 693, 694
NmuCI	GTSAC	1 cut(s)	728
NspI	RCATGY	3 cut(s)	41, 199, 725
PacI	TTAATTAA	1 cut(s)	333
PaeI	GCATGC	1 cut(s)	41
PciI	ACATGT	1 cut(s)	721
PflFI	GACNNNGTC	1 cut(s)	450
PkrI	GCNGC	1 cut(s)	511
PleI	GAGTC	1 cut(s)	336
PluTI	GGCGCC	1 cut(s)	540
PmaCI	CACGTG	1 cut(s)	772
PmlI	CACGTG	1 cut(s)	772
PpsI	GAGTC	1 cut(s)	336
Ppu21I	YACGTR	1 cut(s)	772
PpuMI	RGGWCCY	1 cut(s)	692
PscI	ACATGT	1 cut(s)	721
PshAI	GACNNNNGTC	1 cut(s)	389
Psp5II	RGGWCCY	1 cut(s)	692
Psp6I	CCWGG	1 cut(s)	448
PspCI	CACGTG	1 cut(s)	772
PspEI	GGTNACC	1 cut(s)	439
PspFI	CCCAGC	1 cut(s)	351
PspGI	CCWGG	1 cut(s)	448
PspN4I	GGNNCC	5 cut(s)	56, 538, 585, 693, 694
PspPI	GGNCC	4 cut(s)	12, 446, 642, 692
PspPPI	RGGWCCY	1 cut(s)	692
PsuI	RGATCY	1 cut(s)	494
PsyI	GACNNNGTC	1 cut(s)	450
RsaI	GTAC	1 cut(s)	161
RsaNI	GTAC	1 cut(s)	160
RseI	CAYNNNNRTG	2 cut(s)	604, 726
SaqAI	TTAA	2 cut(s)	329, 333
SatI	GCNGC	1 cut(s)	510
Sau3AI	GATC	4 cut(s)	104, 256, 494, 566
Sau96I	GGNCC	4 cut(s)	12, 446, 642, 692
SchI	GAGTC	1 cut(s)	336
ScrFI	CCNGG	2 cut(s)	252, 450
SduI	GDGCHC	2 cut(s)	586, 721
SetI	ASST	9 cut(s)	317, 321, 357, 426, 451, 468, 490, 712, 774
SexAI	ACCWGGT	1 cut(s)	448
SfoI	GGCGCC	1 cut(s)	538
SinI	GGWCC	3 cut(s)	446, 642, 692
SmiMI	CAYNNNNRTG	2 cut(s)	604, 726
SmlI	CTYRAG	1 cut(s)	705
SmoI	CTYRAG	1 cut(s)	705
SphI	GCATGC	1 cut(s)	41
Sse9I	AATT	6 cut(s)	63, 207, 330, 476, 588, 602
SsiI	CCGC	1 cut(s)	510
SspDI	GGCGCC	1 cut(s)	536
SspMI	CTAG	2 cut(s)	525, 531
StyD4I	CCNGG	2 cut(s)	250, 448
TaaI	ACNGT	1 cut(s)	388
TaiI	ACGT	3 cut(s)	426, 468, 774
TaqI	TCGA	3 cut(s)	103, 399, 543
TasI	AATT	6 cut(s)	63, 207, 330, 476, 588, 602
TauI	GCSGC	1 cut(s)	512
Tru1I	TTAA	2 cut(s)	329, 333
Tru9I	TTAA	2 cut(s)	329, 333
TseFI	GTSAC	1 cut(s)	728
Tsp45I	GTSAC	1 cut(s)	728
TspDTI	ATGAA	2 cut(s)	39, 581
TspGWI	ACGGA	2 cut(s)	47, 87
Tth111I	GACNNNGTC	1 cut(s)	450
VpaK11BI	GGWCC	3 cut(s)	446, 642, 692
XapI	RAATTY	1 cut(s)	476
XceI	RCATGY	3 cut(s)	41, 199, 725
XmiI	GTMKAC	2 cut(s)	575, 681
XspI	CTAG	2 cut(s)	525, 531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.