Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0003803

Physical Location & Seq

Genomic Coordinates Forward (+)

23753122 .. 23754434

Gene Structure 1313 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1157000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGGACTTCCTGGTGATATATACGATTGCTCTCAAAATCTTTAGCATCAATTTATCAGAGACATATCAACTCAGTGTGGTGAGAGGAGATACCTACCTCCTACGCCTAATCAATGTTGCACTAAATAACCAACTCTTCTTCAAGATAGCCAATCACAACATGACAGTTGTCGCCATCGACGCCACTTACATGGCCGCCACTCCATATGTCACCGACGTGGTGGTTACTGGACCTGGTCAAACCACTGACGTTCTTGTCAACTTCAATCAACCTATCAGATCTTATTACATGGCCGCCACTCCGTATGCTAGTGCAAACATCGACTTTGATAACACGACCACCAGAGGCATCATCGTCTACAAGAATTCCAAGTCATCAACCCCCATTATGCCGGCCTTGCCCAACCCTCACGACACGTCGTTGGCCCACAAGTTCTATACTAATCTCACTTGCCTCATCGGCGGGCCCCAATGGGTCCCGGTCCCACTTCAAGTGGACAAGCACATGTTCATGACAATCGGCGTGAACTTAGAAATGTGTCCAAAAAATGCCACATGTCAAGGCCCACTCTTTAGCCGATTGTCTGCTAGCATGAACAACGAGTCATTCGTGCTTCCAAGCAATACGTCAATGATGGAAGCACATTTTAACAACGTGAGTGGGGTTTACACCAGAGATTTTCCTGACGAGCCTTCGGTAAAGTTTGATTACACAGACACGAATGTCAGCTTCGACCTGTCGCTAATATACGCACCAAAATCTACCAAGGTCAAGACACTAAAGTTCAATTTGACGGTAGAGATCGTGCTTCAAAACACAGCATTTTTGGCGATCGAGAACCATCCTATCCATCTCCACGGCTTCAATTTTCACGTGTTAGCACAAGGATTTGGTAACTACGACCCGATTAATGACCCCAAAAAATTCAACTTCGTTAATTCGCAAATTCGTAACACAATTGGTGTGCCGGTCGAAGGATGGGCTGTGATTAGGTTTCAAGCAAATAATCCAGGAATTTGGTACATGCACTGTCATTTGGACATTCATCTGTCATGGGGGCTAGGCTTGGCTTTTGAGGTTGAAAATGGACCTACTGCAGAATCTACTTTGCCTTCGCCACCACTTGATCTGCCCAAATGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0007275 GO:0008150 GO:0008152 GO:0009791 GO:0010035 GO:0010038 GO:0010228 GO:0016491 GO:0016722 GO:0022414 GO:0032501 GO:0032502 GO:0042221 GO:0046688 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0055114 GO:0061458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

381

Amino Acids

42.39

Weight (kDa)

6.03

Isoelectric Point (pI)

31.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu-oxidase	PF00394	19 - 123	1.4e-28	Multicopper oxidase
Cu-oxidase_2	PF07731	227 - 362	9.1e-39	Multicopper oxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003803)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09220 AT3G09220
fragaria_vesca	FvH4_6g12410 FvH4_6g12430 FvH4_6g12430
malus_domestica	MD04G1142300.v1.1 MD04G1142400.v1.1 MD04G1142600.v1.1 MD04G1142900.v1.1 MD12G1157000.v1.1 MD12G1157100.v1.1 MD12G1157900.v1.1 MD16G1147100.v1.1
prunus_persica	Prupe.6G267700_v2.0.a1
pyrus_communis	pycom04g12930 pycom04g12940 pycom04g12950 pycom04g12960 pycom04g12970 pycom04g12980 pycom12g14940
rosa_chinensis	RchiOBHm_Chr3g0464241
rosa_laevigata	RLG00000024714 RLG00000036611
rosa_multiflora	Rmu_sc0005961.1_g000011 Rmu_sc0007811.1_g000009
rosa_roxburghii	Rroxscaffold_1G00005620 Rroxscaffold_6G00415910
rosa_rugosa	Rorug03G0071000
rosa_samantha	Rh3DG134200 Rh5AG501600 Rh5CG547100
rosa_wichuraiana	Rw3G010860 Rw5G046570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	254, 722
AccI	GTMKAC	1 cut(s)	357
AciI	CCGC	3 cut(s)	195, 294, 462
AcoI	YGGCCR	2 cut(s)	192, 291
AcsI	RAATTY	4 cut(s)	364, 923, 945, 1014
AcvI	CACGTG	1 cut(s)	874
AcyI	GRCGYC	1 cut(s)	180
AfaI	GTAC	1 cut(s)	1022
AfiI	CCNNNNNNNGG	1 cut(s)	974
AflIII	ACRYGT	4 cut(s)	414, 504, 554, 873
AgsI	TTSAA	9 cut(s)	142, 265, 491, 787, 812, 865, 928, 998, 1082
AjiI	CACGTC	2 cut(s)	217, 417
AjnI	CCWGG	3 cut(s)	9, 232, 1009
AleI	CACNNNNGTG	1 cut(s)	215
AluBI	AGCT	1 cut(s)	729
AluI	AGCT	1 cut(s)	729
Alw26I	GTCTC	1 cut(s)	53
AoxI	GGCC	6 cut(s)	192, 291, 393, 423, 464, 562
ApaI	GGGCCC	1 cut(s)	468
ApoI	RAATTY	4 cut(s)	364, 923, 945, 1014
AseI	ATTAAT	1 cut(s)	909
AspS9I	GGNCC	8 cut(s)	230, 424, 464, 465, 475, 481, 563, 1088
AsuC2I	CCSGG	1 cut(s)	479
AsuHPI	GGTGA	3 cut(s)	25, 91, 202
AsuNHI	GCTAGC	1 cut(s)	587
AvaII	GGWCC	4 cut(s)	230, 475, 481, 1088
BaeGI	GKGCMC	1 cut(s)	468
BanII	GRGCYC	1 cut(s)	468
BbrPI	CACGTG	1 cut(s)	874
BccI	CCATC	5 cut(s)	182, 628, 849, 858, 972
BceAI	ACGGC	1 cut(s)	874
BciT130I	CCWGG	3 cut(s)	11, 234, 1011
BcnI	CCSGG	1 cut(s)	479
BcoDI	GTCTC	1 cut(s)	53
BfaI	CTAG	3 cut(s)	309, 588, 1061
BfmI	CTRYAG	1 cut(s)	1095
BglI	GCCNNNNNGGC	1 cut(s)	459
BglII	AGATCT	1 cut(s)	278
BisI	GCNGC	2 cut(s)	195, 294
BlsI	GCNGC	2 cut(s)	196, 295
Bme1390I	CCNGG	4 cut(s)	11, 234, 479, 1011
Bme18I	GGWCC	4 cut(s)	230, 475, 481, 1088
BmgBI	CACGTC	2 cut(s)	217, 417
BmgT120I	GGNCC	8 cut(s)	230, 424, 464, 465, 475, 481, 563, 1088
BmiI	GGNNCC	5 cut(s)	466, 467, 476, 477, 483
BmrFI	CCNGG	4 cut(s)	11, 234, 479, 1011
BmsI	GCATC	2 cut(s)	54, 357
BmtI	GCTAGC	1 cut(s)	591
BoxI	GACNNNNGTC	1 cut(s)	167
BpuMI	CCSGG	1 cut(s)	479
BsaAI	YACGTR	1 cut(s)	874
BsaHI	GRCGYC	1 cut(s)	180
BsaJI	CCNNGG	2 cut(s)	765, 856
Bsc4I	CCNNNNNNNGG	1 cut(s)	974
Bse118I	RCCGGY	2 cut(s)	391, 967
Bse1I	ACTGG	1 cut(s)	232
BseBI	CCWGG	3 cut(s)	11, 234, 1011
BseDI	CCNNGG	2 cut(s)	765, 856
BseGI	GGATG	2 cut(s)	841, 983
BseLI	CCNNNNNNNGG	1 cut(s)	974
BseMII	CTCAG	1 cut(s)	85
BseNI	ACTGG	1 cut(s)	232
BseRI	GAGGAG	1 cut(s)	99
BseSI	GKGCMC	1 cut(s)	468
Bsh1285I	CGRYCG	2 cut(s)	834, 972
BshFI	GGCC	6 cut(s)	194, 293, 395, 425, 466, 564
BsiEI	CGRYCG	2 cut(s)	834, 972
BsiSI	CCGG	3 cut(s)	392, 479, 968
BslFI	GGGAC	2 cut(s)	461, 467
BslI	CCNNNNNNNGG	1 cut(s)	974
BsmAI	GTCTC	1 cut(s)	53
BsmFI	GGGAC	2 cut(s)	461, 467
BsnI	GGCC	6 cut(s)	194, 293, 395, 425, 466, 564
Bsp120I	GGGCCC	1 cut(s)	464
Bsp1286I	GDGCHC	1 cut(s)	468
Bsp143I	GATC	4 cut(s)	278, 801, 831, 1126
BspACI	CCGC	3 cut(s)	195, 294, 462
BspANI	GGCC	6 cut(s)	194, 293, 395, 425, 466, 564
BspCNI	CTCAG	1 cut(s)	84
BspHI	TCATGA	1 cut(s)	510
BspLI	GGNNCC	5 cut(s)	466, 467, 476, 477, 483
BspMAI	CTGCAG	1 cut(s)	1099
BspOI	GCTAGC	1 cut(s)	591
BsrFI	RCCGGY	2 cut(s)	391, 967
BsrI	ACTGG	1 cut(s)	232
BssAI	RCCGGY	2 cut(s)	391, 967
BssECI	CCNNGG	2 cut(s)	765, 856
BssMI	GATC	4 cut(s)	278, 801, 831, 1126
BssNI	GRCGYC	1 cut(s)	180
BssT1I	CCWWGG	1 cut(s)	765
Bst2UI	CCWGG	3 cut(s)	11, 234, 1011
Bst4CI	ACNGT	3 cut(s)	166, 796, 1031
Bst6I	CTCTTC	1 cut(s)	140
BstACI	GRCGYC	1 cut(s)	180
BstBAI	YACGTR	1 cut(s)	874
BstC8I	GCNNGC	3 cut(s)	393, 464, 589
BstDEI	CTNAG	2 cut(s)	71, 529
BstDSI	CCRYGG	1 cut(s)	856
BstF5I	GGATG	2 cut(s)	841, 983
BstKTI	GATC	4 cut(s)	281, 804, 834, 1129
BstMAI	GTCTC	1 cut(s)	53
BstMBI	GATC	4 cut(s)	278, 801, 831, 1126
BstMCI	CGRYCG	2 cut(s)	834, 972
BstMWI	GCNNNNNNNGC	4 cut(s)	179, 397, 459, 827
BstNI	CCWGG	3 cut(s)	11, 234, 1011
BstNSI	RCATGY	3 cut(s)	508, 558, 1027
BstPAI	GACNNNNGTC	1 cut(s)	167
BstSCI	CCNGG	4 cut(s)	9, 232, 477, 1009
BstSFI	CTRYAG	1 cut(s)	1095
BstSLI	GKGCMC	1 cut(s)	468
BstX2I	RGATCY	1 cut(s)	278
BstXI	CCANNNNNNTGG	2 cut(s)	190, 1017
BstYI	RGATCY	1 cut(s)	278
BsuRI	GGCC	6 cut(s)	194, 293, 395, 425, 466, 564
BtgI	CCRYGG	1 cut(s)	856
BtrI	CACGTC	2 cut(s)	217, 417
BtsCI	GGATG	2 cut(s)	841, 983
BtsIMutI	CAGTG	3 cut(s)	79, 243, 1027
Cac8I	GCNNGC	3 cut(s)	393, 464, 589
CciI	TCATGA	1 cut(s)	510
Cfr10I	RCCGGY	2 cut(s)	391, 967
Cfr13I	GGNCC	8 cut(s)	230, 424, 464, 465, 475, 481, 563, 1088
CseI	GACGC	1 cut(s)	188
CsiI	ACCWGGT	1 cut(s)	232
Csp6I	GTAC	1 cut(s)	1021
CspCI	CAANNNNNGTGG	2 cut(s)	640, 675
CviAII	CATG	9 cut(s)	160, 190, 289, 505, 511, 555, 592, 1024, 1053
CviQI	GTAC	1 cut(s)	1021
DdeI	CTNAG	2 cut(s)	71, 529
DpnI	GATC	4 cut(s)	280, 803, 833, 1128
DpnII	GATC	4 cut(s)	278, 801, 831, 1126
DrdI	GACNNNNNNGTC	2 cut(s)	254, 722
DseDI	GACNNNNNNGTC	2 cut(s)	254, 722
EaeI	YGGCCR	2 cut(s)	192, 291
Eam1104I	CTCTTC	1 cut(s)	140
EarI	CTCTTC	1 cut(s)	140
Eco130I	CCWWGG	1 cut(s)	765
Eco24I	GRGCYC	1 cut(s)	468
Eco47I	GGWCC	4 cut(s)	230, 475, 481, 1088
Eco72I	CACGTG	1 cut(s)	874
EcoO109I	RGGNCCY	2 cut(s)	465, 475
EcoRI	GAATTC	1 cut(s)	364
EcoRII	CCWGG	3 cut(s)	9, 232, 1009
EcoT14I	CCWWGG	1 cut(s)	765
EcoT38I	GRGCYC	1 cut(s)	468
ErhI	CCWWGG	1 cut(s)	765
FaeI	CATG	9 cut(s)	163, 193, 292, 508, 514, 558, 595, 1027, 1056
FaqI	GGGAC	2 cut(s)	461, 467
FatI	CATG	9 cut(s)	159, 189, 288, 504, 510, 554, 591, 1023, 1052
FauI	CCCGC	1 cut(s)	455
FauNDI	CATATG	1 cut(s)	205
FblI	GTMKAC	1 cut(s)	357
Fnu4HI	GCNGC	2 cut(s)	195, 294
FokI	GGATG	2 cut(s)	828, 990
FriOI	GRGCYC	1 cut(s)	468
Fsp4HI	GCNGC	2 cut(s)	195, 294
FspBI	CTAG	3 cut(s)	309, 588, 1061
GluI	GCNGC	2 cut(s)	195, 294
HaeIII	GGCC	6 cut(s)	194, 293, 395, 425, 466, 564
HapII	CCGG	3 cut(s)	392, 479, 968
HgaI	GACGC	1 cut(s)	188
Hin1I	GRCGYC	1 cut(s)	180
Hin1II	CATG	9 cut(s)	163, 193, 292, 508, 514, 558, 595, 1027, 1056
HincII	GTYRAC	1 cut(s)	259
HindII	GTYRAC	1 cut(s)	259
HinfI	GANTC	2 cut(s)	602, 1100
HpaII	CCGG	3 cut(s)	392, 479, 968
HphI	GGTGA	3 cut(s)	25, 91, 202
Hpy166II	GTNNAC	5 cut(s)	259, 358, 496, 526, 667
Hpy188I	TCNGA	2 cut(s)	58, 278
Hpy188III	TCNNGA	6 cut(s)	142, 410, 511, 683, 772, 835
Hpy8I	GTNNAC	5 cut(s)	259, 358, 496, 526, 667
Hpy99I	CGWCG	3 cut(s)	182, 218, 421
HpyAV	CCTTC	3 cut(s)	702, 968, 1122
HpyCH4III	ACNGT	3 cut(s)	166, 796, 1031
HpyCH4IV	ACGT	6 cut(s)	216, 249, 416, 626, 654, 873
HpyCH4V	TGCA	4 cut(s)	119, 314, 1027, 1097
HpyF10VI	GCNNNNNNNGC	4 cut(s)	179, 397, 459, 827
HpyF3I	CTNAG	2 cut(s)	71, 529
HpySE526I	ACGT	6 cut(s)	216, 249, 416, 626, 654, 873
Hsp92I	GRCGYC	1 cut(s)	180
Hsp92II	CATG	9 cut(s)	163, 193, 292, 508, 514, 558, 595, 1027, 1056
KflI	GGGWCCC	1 cut(s)	475
KroI	GCCGGC	1 cut(s)	391
KroNI	GCCGGC	1 cut(s)	393
Kzo9I	GATC	4 cut(s)	278, 801, 831, 1126
LweI	GCATC	2 cut(s)	54, 357
MabI	ACCWGGT	1 cut(s)	232
MaeI	CTAG	3 cut(s)	309, 588, 1061
MaeII	ACGT	6 cut(s)	216, 249, 416, 626, 654, 873
MaeIII	GTNAC	4 cut(s)	208, 223, 893, 950
MalI	GATC	4 cut(s)	280, 803, 833, 1128
MboI	GATC	4 cut(s)	278, 801, 831, 1126
MboII	GAAGA	2 cut(s)	127, 130
MfeI	CAATTG	1 cut(s)	957
MflI	RGATCY	1 cut(s)	278
MhlI	GDGCHC	1 cut(s)	468
MluCI	AATT	9 cut(s)	49, 364, 787, 865, 923, 937, 945, 957, 1014
MlyI	GAGTC	1 cut(s)	611
MnlI	CCTC	6 cut(s)	77, 107, 338, 417, 464, 1069
MroNI	GCCGGC	1 cut(s)	391
MseI	TTAA	3 cut(s)	648, 909, 936
MslI	CAYNNNNRTG	3 cut(s)	188, 215, 509
MspI	CCGG	3 cut(s)	392, 479, 968
MspR9I	CCNGG	4 cut(s)	11, 234, 479, 1011
MunI	CAATTG	1 cut(s)	957
MvaI	CCWGG	3 cut(s)	11, 234, 1011
MwoI	GCNNNNNNNGC	4 cut(s)	179, 397, 459, 827
NaeI	GCCGGC	1 cut(s)	393
NciI	CCSGG	1 cut(s)	479
NdeI	CATATG	1 cut(s)	205
NdeII	GATC	4 cut(s)	278, 801, 831, 1126
NgoMIV	GCCGGC	1 cut(s)	391
NheI	GCTAGC	1 cut(s)	587
NlaIII	CATG	9 cut(s)	163, 193, 292, 508, 514, 558, 595, 1027, 1056
NlaIV	GGNNCC	5 cut(s)	466, 467, 476, 477, 483
NmuCI	GTSAC	1 cut(s)	208
NspI	RCATGY	3 cut(s)	508, 558, 1027
OliI	CACNNNNGTG	1 cut(s)	215
PagI	TCATGA	1 cut(s)	510
PciI	ACATGT	2 cut(s)	504, 554
PcsI	WCGNNNNNNNCGW	1 cut(s)	606
PdiI	GCCGGC	1 cut(s)	393
PfeI	GAWTC	1 cut(s)	1100
PflFI	GACNNNGTC	1 cut(s)	234
PfoI	TCCNGGA	1 cut(s)	1009
PkrI	GCNGC	2 cut(s)	196, 295
Ple19I	CGATCG	1 cut(s)	834
PleI	GAGTC	1 cut(s)	610
PmaCI	CACGTG	1 cut(s)	874
PmlI	CACGTG	1 cut(s)	874
PpsI	GAGTC	1 cut(s)	610
Ppu21I	YACGTR	1 cut(s)	874
PpuMI	RGGWCCY	1 cut(s)	475
PscI	ACATGT	2 cut(s)	504, 554
PshAI	GACNNNNGTC	1 cut(s)	167
PshBI	ATTAAT	1 cut(s)	909
Psp5II	RGGWCCY	1 cut(s)	475
Psp6I	CCWGG	3 cut(s)	9, 232, 1009
PspCI	CACGTG	1 cut(s)	874
PspGI	CCWGG	3 cut(s)	9, 232, 1009
PspN4I	GGNNCC	5 cut(s)	466, 467, 476, 477, 483
PspOMI	GGGCCC	1 cut(s)	464
PspPI	GGNCC	8 cut(s)	230, 424, 464, 465, 475, 481, 563, 1088
PspPPI	RGGWCCY	1 cut(s)	475
PstI	CTGCAG	1 cut(s)	1099
PsuI	RGATCY	1 cut(s)	278
PsyI	GACNNNGTC	1 cut(s)	234
PvuI	CGATCG	1 cut(s)	834
RsaI	GTAC	1 cut(s)	1022
RsaNI	GTAC	1 cut(s)	1021
RseI	CAYNNNNRTG	3 cut(s)	188, 215, 509
SaqAI	TTAA	3 cut(s)	648, 909, 936
SatI	GCNGC	2 cut(s)	195, 294
Sau3AI	GATC	4 cut(s)	278, 801, 831, 1126
Sau96I	GGNCC	8 cut(s)	230, 424, 464, 465, 475, 481, 563, 1088
SchI	GAGTC	1 cut(s)	611
ScrFI	CCNGG	4 cut(s)	11, 234, 479, 1011
SduI	GDGCHC	1 cut(s)	468
SexAI	ACCWGGT	1 cut(s)	232
SfaNI	GCATC	2 cut(s)	54, 357
SfcI	CTRYAG	1 cut(s)	1095
SinI	GGWCC	4 cut(s)	230, 475, 481, 1088
SmiMI	CAYNNNNRTG	3 cut(s)	188, 215, 509
Sse9I	AATT	9 cut(s)	49, 364, 787, 865, 923, 937, 945, 957, 1014
SsiI	CCGC	3 cut(s)	195, 294, 462
SspMI	CTAG	3 cut(s)	309, 588, 1061
StyD4I	CCNGG	4 cut(s)	9, 232, 477, 1009
StyI	CCWWGG	1 cut(s)	765
TaaI	ACNGT	3 cut(s)	166, 796, 1031
TaiI	ACGT	6 cut(s)	219, 252, 419, 629, 657, 876
TaqI	TCGA	5 cut(s)	177, 321, 732, 834, 972
TasI	AATT	9 cut(s)	49, 364, 787, 865, 923, 937, 945, 957, 1014
TauI	GCSGC	2 cut(s)	197, 296
TfiI	GAWTC	1 cut(s)	1100
Tru1I	TTAA	3 cut(s)	648, 909, 936
Tru9I	TTAA	3 cut(s)	648, 909, 936
TscAI	CASTG	3 cut(s)	79, 250, 1034
TseFI	GTSAC	1 cut(s)	208
Tsp45I	GTSAC	1 cut(s)	208
TspDTI	ATGAA	3 cut(s)	499, 608, 1034
TspGWI	ACGGA	1 cut(s)	291
TspRI	CASTG	3 cut(s)	79, 250, 1034
Tth111I	GACNNNGTC	1 cut(s)	234
VpaK11BI	GGWCC	4 cut(s)	230, 475, 481, 1088
VspI	ATTAAT	1 cut(s)	909
XapI	RAATTY	4 cut(s)	364, 923, 945, 1014
XceI	RCATGY	3 cut(s)	508, 558, 1027
XmiI	GTMKAC	1 cut(s)	357
XspI	CTAG	3 cut(s)	309, 588, 1061

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.