Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0003803

Physical Location & Seq

Genomic Coordinates Forward (+)

16022133 .. 16023117

Gene Structure 985 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g12970.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGCACGCTTAGCCTTTGTGCTAGCTTGTGCTCTAGCTCTATTGGCTTCCTCAGTAGCCTCTGGTGCAATTGTTGAGCATTCTTTTAATGTGAACAACCTGACTGTTAGCCGACTATGTCAGAATCAATCAATTACTGTAGTAAATGGAAGTTATCCAGGACCAGCCATATATGCACGAGATGGAGACACACTTATTGTCCACGTTTTAAACCAATCGCCCTATAACATTAGTATTCACTGGCATGGAATCTTTCAACTTCTAAGTCCATGGGCGGATGGACCTGTATATGTAACTCAATGCCCTATACGCCCCGGACAAAGTTATACTTACAAATTTAATATCACCGGACAAGAAGGCACCCTTTGGTGGCATGCCCACATTTCGTGGCTCCGCGCAACCGTCCACGGAGCGCTCATAATCCACCCAAAAGTTGGATCGATCCTTCCCCTTCCCCAAGCCCGCCAAAGAAGTTCCCATCTTATTAGGAGAGTGGTACAATGGCAATGTGGTCGACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0007275 GO:0008150 GO:0008152 GO:0009791 GO:0010035 GO:0010038 GO:0010228 GO:0016491 GO:0016722 GO:0022414 GO:0032501 GO:0032502 GO:0042221 GO:0046688 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0055114 GO:0061458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

174

Amino Acids

19.19

Weight (kDa)

9.69

Isoelectric Point (pI)

50.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003803)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09220 AT3G09220
fragaria_vesca	FvH4_6g12410 FvH4_6g12430 FvH4_6g12430
malus_domestica	MD04G1142300.v1.1 MD04G1142400.v1.1 MD04G1142600.v1.1 MD04G1142900.v1.1 MD12G1157000.v1.1 MD12G1157100.v1.1 MD12G1157900.v1.1 MD16G1147100.v1.1
prunus_persica	Prupe.6G267700_v2.0.a1
pyrus_communis	pycom04g12930 pycom04g12940 pycom04g12950 pycom04g12960 pycom04g12970 pycom04g12980 pycom12g14940
rosa_chinensis	RchiOBHm_Chr3g0464241
rosa_laevigata	RLG00000024714 RLG00000036611
rosa_multiflora	Rmu_sc0005961.1_g000011 Rmu_sc0007811.1_g000009
rosa_roxburghii	Rroxscaffold_1G00005620 Rroxscaffold_6G00415910
rosa_rugosa	Rorug03G0071000
rosa_samantha	Rh3DG134200 Rh5AG501600 Rh5CG547100
rosa_wichuraiana	Rw3G010860 Rw5G046570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	359
AccB7I	CCANNNNNTGG	1 cut(s)	434
AccI	GTMKAC	1 cut(s)	514
AccII	CGCG	1 cut(s)	396
AciI	CCGC	3 cut(s)	275, 394, 463
AclWI	GGATC	2 cut(s)	436, 445
AcsI	RAATTY	1 cut(s)	335
AfaI	GTAC	1 cut(s)	498
AfeI	AGCGCT	1 cut(s)	414
AfiI	CCNNNNNNNGG	2 cut(s)	369, 434
AgsI	TTSAA	1 cut(s)	257
AjnI	CCWGG	1 cut(s)	157
AluBI	AGCT	2 cut(s)	26, 38
AluI	AGCT	2 cut(s)	26, 38
Alw21I	GWGCWC	1 cut(s)	34
Alw26I	GTCTC	1 cut(s)	180
AlwI	GGATC	2 cut(s)	436, 445
Aor51HI	AGCGCT	1 cut(s)	414
ApoI	RAATTY	1 cut(s)	335
AspLEI	GCGC	2 cut(s)	398, 415
AspS9I	GGNCC	2 cut(s)	161, 281
AsuC2I	CCSGG	1 cut(s)	315
AsuHPI	GGTGA	1 cut(s)	337
AsuNHI	GCTAGC	1 cut(s)	22
AvaII	GGWCC	2 cut(s)	161, 281
BanI	GGYRCC	1 cut(s)	359
BauI	CACGAG	1 cut(s)	177
Bbv12I	GWGCWC	1 cut(s)	34
BccI	CCATC	3 cut(s)	176, 272, 486
BcgI	CGANNNNNNTGC	1 cut(s)	494
BciT130I	CCWGG	1 cut(s)	159
BcnI	CCSGG	1 cut(s)	315
BcoDI	GTCTC	1 cut(s)	180
BfaI	CTAG	2 cut(s)	23, 35
BfmI	CTRYAG	1 cut(s)	138
BfoI	RGCGCY	1 cut(s)	416
BlpI	GCTNAGC	1 cut(s)	10
Bme1390I	CCNGG	2 cut(s)	159, 315
Bme18I	GGWCC	2 cut(s)	161, 281
BmgT120I	GGNCC	2 cut(s)	161, 281
BmiI	GGNNCC	2 cut(s)	361, 392
BmrFI	CCNGG	2 cut(s)	159, 315
BmtI	GCTAGC	1 cut(s)	26
Bpu1102I	GCTNAGC	1 cut(s)	10
BpuMI	CCSGG	1 cut(s)	315
Bsa29I	ATCGAT	1 cut(s)	440
BsaJI	CCNNGG	3 cut(s)	269, 313, 406
BsaWI	WCCGGW	1 cut(s)	347
Bsc4I	CCNNNNNNNGG	2 cut(s)	369, 434
Bse1I	ACTGG	1 cut(s)	245
Bse3DI	GCAATG	1 cut(s)	512
BseBI	CCWGG	1 cut(s)	159
BseCI	ATCGAT	1 cut(s)	440
BseDI	CCNNGG	3 cut(s)	269, 313, 406
BseGI	GGATG	1 cut(s)	283
BseLI	CCNNNNNNNGG	2 cut(s)	369, 434
BseMI	GCAATG	1 cut(s)	512
BseMII	CTCAG	1 cut(s)	66
BseNI	ACTGG	1 cut(s)	245
Bsh1236I	CGCG	1 cut(s)	396
BshNI	GGYRCC	1 cut(s)	359
BshVI	ATCGAT	1 cut(s)	440
BsiHKAI	GWGCWC	1 cut(s)	34
BsiSI	CCGG	2 cut(s)	315, 348
BslI	CCNNNNNNNGG	2 cut(s)	369, 434
BsmAI	GTCTC	1 cut(s)	180
BsmI	GAATGC	1 cut(s)	79
Bsp1286I	GDGCHC	1 cut(s)	34
Bsp143I	GATC	2 cut(s)	437, 441
Bsp1720I	GCTNAGC	1 cut(s)	10
Bsp19I	CCATGG	1 cut(s)	269
BspACI	CCGC	3 cut(s)	275, 394, 463
BspCNI	CTCAG	1 cut(s)	65
BspDI	ATCGAT	1 cut(s)	440
BspFNI	CGCG	1 cut(s)	396
BspLI	GGNNCC	2 cut(s)	361, 392
BspOI	GCTAGC	1 cut(s)	26
BspPI	GGATC	2 cut(s)	436, 445
BspT107I	GGYRCC	1 cut(s)	359
BsrDI	GCAATG	1 cut(s)	512
BsrI	ACTGG	1 cut(s)	245
BssECI	CCNNGG	3 cut(s)	269, 313, 406
BssMI	GATC	2 cut(s)	437, 441
BssSI	CACGAG	1 cut(s)	177
BssT1I	CCWWGG	1 cut(s)	269
Bst2BI	CACGAG	1 cut(s)	177
Bst2UI	CCWGG	1 cut(s)	159
Bst4CI	ACNGT	3 cut(s)	106, 139, 403
BstC8I	GCNNGC	4 cut(s)	7, 24, 375, 463
BstDEI	CTNAG	3 cut(s)	10, 52, 263
BstDSI	CCRYGG	2 cut(s)	269, 406
BstF5I	GGATG	1 cut(s)	283
BstFNI	CGCG	1 cut(s)	396
BstH2I	RGCGCY	1 cut(s)	416
BstHHI	GCGC	2 cut(s)	398, 415
BstKTI	GATC	2 cut(s)	440, 444
BstMAI	GTCTC	1 cut(s)	180
BstMBI	GATC	2 cut(s)	437, 441
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 44, 65, 173, 309
BstNI	CCWGG	1 cut(s)	159
BstNSI	RCATGY	1 cut(s)	377
BstSCI	CCNGG	2 cut(s)	157, 313
BstSFI	CTRYAG	1 cut(s)	138
BstUI	CGCG	1 cut(s)	396
Bsu15I	ATCGAT	1 cut(s)	440
BsuTUI	ATCGAT	1 cut(s)	440
BtgI	CCRYGG	2 cut(s)	269, 406
BtsCI	GGATG	1 cut(s)	283
BtsIMutI	CAGTG	1 cut(s)	238
Cac8I	GCNNGC	4 cut(s)	7, 24, 375, 463
CfoI	GCGC	2 cut(s)	398, 415
Cfr13I	GGNCC	2 cut(s)	161, 281
ClaI	ATCGAT	1 cut(s)	440
Csp6I	GTAC	1 cut(s)	497
CviAII	CATG	3 cut(s)	245, 270, 374
CviJI	RGCY	9 cut(s)	14, 26, 38, 47, 59, 111, 167, 391, 461
CviKI_1	RGCY	9 cut(s)	14, 26, 38, 47, 59, 111, 167, 391, 461
CviQI	GTAC	1 cut(s)	497
DdeI	CTNAG	3 cut(s)	10, 52, 263
DpnI	GATC	2 cut(s)	439, 443
DpnII	GATC	2 cut(s)	437, 441
DraI	TTTAAA	1 cut(s)	210
EciI	GGCGGA	1 cut(s)	290
Eco130I	CCWWGG	1 cut(s)	269
Eco47I	GGWCC	2 cut(s)	161, 281
Eco47III	AGCGCT	1 cut(s)	414
EcoRII	CCWGG	1 cut(s)	157
EcoT14I	CCWWGG	1 cut(s)	269
ErhI	CCWWGG	1 cut(s)	269
FaeI	CATG	3 cut(s)	248, 273, 377
FalI	AAGNNNNNCTT	4 cut(s)	313, 345, 348, 380
FatI	CATG	3 cut(s)	244, 269, 373
FauI	CCCGC	1 cut(s)	470
FblI	GTMKAC	1 cut(s)	514
FokI	GGATG	1 cut(s)	290
FspBI	CTAG	2 cut(s)	23, 35
GlaI	GCGC	2 cut(s)	397, 414
HaeII	RGCGCY	1 cut(s)	416
HapII	CCGG	2 cut(s)	315, 348
HhaI	GCGC	2 cut(s)	398, 415
Hin1II	CATG	3 cut(s)	248, 273, 377
Hin6I	GCGC	2 cut(s)	396, 413
HinP1I	GCGC	2 cut(s)	396, 413
HincII	GTYRAC	1 cut(s)	515
HindII	GTYRAC	1 cut(s)	515
HinfI	GANTC	2 cut(s)	124, 249
HpaII	CCGG	2 cut(s)	315, 348
HphI	GGTGA	1 cut(s)	337
Hpy166II	GTNNAC	4 cut(s)	94, 202, 406, 515
Hpy188I	TCNGA	1 cut(s)	123
Hpy8I	GTNNAC	4 cut(s)	94, 202, 406, 515
HpyAV	CCTTC	3 cut(s)	350, 455, 461
HpyCH4III	ACNGT	3 cut(s)	106, 139, 403
HpyCH4IV	ACGT	1 cut(s)	204
HpyCH4V	TGCA	2 cut(s)	68, 176
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 44, 65, 173, 309
HpyF3I	CTNAG	3 cut(s)	10, 52, 263
HpySE526I	ACGT	1 cut(s)	204
Hsp92II	CATG	3 cut(s)	248, 273, 377
HspAI	GCGC	2 cut(s)	396, 413
Kzo9I	GATC	2 cut(s)	437, 441
LmnI	GCTCC	2 cut(s)	396, 410
LpnPI	CCDG	9 cut(s)	48, 113, 144, 171, 177, 226, 297, 328, 361
MaeI	CTAG	2 cut(s)	23, 35
MaeII	ACGT	1 cut(s)	204
MaeIII	GTNAC	1 cut(s)	292
MalI	GATC	2 cut(s)	439, 443
MboI	GATC	2 cut(s)	437, 441
MfeI	CAATTG	1 cut(s)	69
MhlI	GDGCHC	1 cut(s)	34
MluCI	AATT	3 cut(s)	69, 132, 335
MmeI	TCCRAC	1 cut(s)	415
MnlI	CCTC	2 cut(s)	61, 70
MseI	TTAA	3 cut(s)	87, 209, 339
MslI	CAYNNNNRTG	1 cut(s)	243
MspI	CCGG	2 cut(s)	315, 348
MspR9I	CCNGG	2 cut(s)	159, 315
MunI	CAATTG	1 cut(s)	69
Mva1269I	GAATGC	1 cut(s)	79
MvaI	CCWGG	1 cut(s)	159
MvnI	CGCG	1 cut(s)	396
MwoI	GCNNNNNNNGC	5 cut(s)	11, 44, 65, 173, 309
NciI	CCSGG	1 cut(s)	315
NcoI	CCATGG	1 cut(s)	269
NdeII	GATC	2 cut(s)	437, 441
NheI	GCTAGC	1 cut(s)	22
NlaIII	CATG	3 cut(s)	248, 273, 377
NlaIV	GGNNCC	2 cut(s)	361, 392
NspI	RCATGY	1 cut(s)	377
PaeI	GCATGC	1 cut(s)	377
PctI	GAATGC	1 cut(s)	79
PfeI	GAWTC	2 cut(s)	124, 249
PflFI	GACNNNGTC	1 cut(s)	117
PflMI	CCANNNNNTGG	1 cut(s)	434
PfoI	TCCNGGA	1 cut(s)	157
Psp6I	CCWGG	1 cut(s)	157
PspGI	CCWGG	1 cut(s)	157
PspN4I	GGNNCC	2 cut(s)	361, 392
PspPI	GGNCC	2 cut(s)	161, 281
PsyI	GACNNNGTC	1 cut(s)	117
RsaI	GTAC	1 cut(s)	498
RsaNI	GTAC	1 cut(s)	497
RseI	CAYNNNNRTG	1 cut(s)	243
SalI	GTCGAC	1 cut(s)	513
SaqAI	TTAA	3 cut(s)	87, 209, 339
Sau3AI	GATC	2 cut(s)	437, 441
Sau96I	GGNCC	2 cut(s)	161, 281
ScrFI	CCNGG	2 cut(s)	159, 315
SduI	GDGCHC	1 cut(s)	34
SetI	ASST	5 cut(s)	28, 40, 102, 207, 286
SfcI	CTRYAG	1 cut(s)	138
SinI	GGWCC	2 cut(s)	161, 281
SmiMI	CAYNNNNRTG	1 cut(s)	243
SphI	GCATGC	1 cut(s)	377
Sse9I	AATT	3 cut(s)	69, 132, 335
SsiI	CCGC	3 cut(s)	275, 394, 463
SspMI	CTAG	2 cut(s)	23, 35
StyD4I	CCNGG	2 cut(s)	157, 313
StyI	CCWWGG	1 cut(s)	269
TaaI	ACNGT	3 cut(s)	106, 139, 403
TaiI	ACGT	1 cut(s)	207
TaqI	TCGA	2 cut(s)	440, 514
TasI	AATT	3 cut(s)	69, 132, 335
TfiI	GAWTC	2 cut(s)	124, 249
Tru1I	TTAA	3 cut(s)	87, 209, 339
Tru9I	TTAA	3 cut(s)	87, 209, 339
TscAI	CASTG	1 cut(s)	245
TspGWI	ACGGA	1 cut(s)	423
TspRI	CASTG	1 cut(s)	245
Tth111I	GACNNNGTC	1 cut(s)	117
Van91I	CCANNNNNTGG	1 cut(s)	434
VpaK11BI	GGWCC	2 cut(s)	161, 281
XapI	RAATTY	1 cut(s)	335
XceI	RCATGY	1 cut(s)	377
XcmI	CCANNNNNNNNNTGG	1 cut(s)	431
XmiI	GTMKAC	1 cut(s)	514
XspI	CTAG	2 cut(s)	23, 35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.