Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0003803

Physical Location & Seq

Genomic Coordinates Forward (+)

16023159 .. 16024276

Gene Structure 1118 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g12980.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGCTTACACCATCAATGGAATTCCTGGTCGATCTCTACGACTGCTCTCAAAATCAAACATATCAACTAAGTGTGGTGAGAGGAAAGACCTACTTGCTACGCCTAATCAATGCTGGACTCAATACCCAACTCTTCTTCAAGATAGCCAATCACAAGATGACAGTTGTCGCCATCGACGCCACCTACACCACTCCTTATGTTACCGACGTGGTGGTAACCGGACCCGGTCAGACCACCGACGTTCTTGTTAAATTCAATCAACCTATTGGATCTTATTACATGGCCGCCACTCCGTACGCTAGCGCTAGTGACACCATCGACTTTGATAACTCGACCACCAGAGGCATCATCGTCTACAAGAGCTCCAATTCATCAACACCCATTATGCCCTTAATGCCCAACCCTCACGACACGCCATTGGCCCACAAGTTCCTCACCAATCTCACCAGCCTTGCCGGAGGACCCCAATGGGTTCCAGTCCCACTCAAGGTGGACGAGCACATGTTCGTGACAATCGGCGTTAACTTGGAGATGTGTCCAGAAAACGCCACATGCCAGGGCCTATTCAATAACCGAATGTCTGCAAGCATGAGCAACGAGTCATTTGTGCTCCCAAGCAATACATCCATGCTGGAAGCACAGTTTCACAATGTGAGTGGGGTTTACACCAGAGACTTTCCTAACGAGCCTCTAATCAAATTTGACTACACGGACACAAACATCAGCCTCGACCTATCGTTGATATACGCACCAAAATCAACCAAGGTCAAGACGTTGAAGTTCAATTCAACGGTGGAGATGGTGCTTCAGAACACAGCATTTTTGGCCATCGAGAACCACCCGATGCATCTCCACGGCTTCAATTTCCACGTGTTGGCACAAGGGTTTGGAAATTACGACCCGATTAATGACCCCAAAAAATTTAACTTCGTTAATCCGCAAATACGTAACACAATTGGTGTGCCAGTCGGAGGATGGGCTGTGATCAGGTTTCAAGCAAATAATCCTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0007275 GO:0008150 GO:0008152 GO:0009791 GO:0010035 GO:0010038 GO:0010228 GO:0016491 GO:0016722 GO:0022414 GO:0032501 GO:0032502 GO:0042221 GO:0046688 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0055114 GO:0061458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

338

Amino Acids

37.4

Weight (kDa)

6.12

Isoelectric Point (pI)

27.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003803)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09220 AT3G09220
fragaria_vesca	FvH4_6g12410 FvH4_6g12430 FvH4_6g12430
malus_domestica	MD04G1142300.v1.1 MD04G1142400.v1.1 MD04G1142600.v1.1 MD04G1142900.v1.1 MD12G1157000.v1.1 MD12G1157100.v1.1 MD12G1157900.v1.1 MD16G1147100.v1.1
prunus_persica	Prupe.6G267700_v2.0.a1
pyrus_communis	pycom04g12930 pycom04g12940 pycom04g12950 pycom04g12960 pycom04g12970 pycom04g12980 pycom12g14940
rosa_chinensis	RchiOBHm_Chr3g0464241
rosa_laevigata	RLG00000024714 RLG00000036611
rosa_multiflora	Rmu_sc0005961.1_g000011 Rmu_sc0007811.1_g000009
rosa_roxburghii	Rroxscaffold_1G00005620 Rroxscaffold_6G00415910
rosa_rugosa	Rorug03G0071000
rosa_samantha	Rh3DG134200 Rh5AG501600 Rh5CG547100
rosa_wichuraiana	Rw3G010860 Rw5G046570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	874
AccI	GTMKAC	1 cut(s)	354
AciI	CCGC	2 cut(s)	285, 938
AclWI	GGATC	1 cut(s)	277
AcoI	YGGCCR	2 cut(s)	282, 825
AcsI	RAATTY	4 cut(s)	20, 251, 698, 920
AcuI	CTGAAG	1 cut(s)	791
AcvI	CACGTG	1 cut(s)	871
AcyI	GRCGYC	1 cut(s)	177
AdeI	CACNNNGTG	1 cut(s)	652
AfaI	GTAC	1 cut(s)	296
AfeI	AGCGCT	1 cut(s)	304
AfiI	CCNNNNNNNGG	3 cut(s)	487, 874, 971
AflIII	ACRYGT	2 cut(s)	501, 870
AgsI	TTSAA	8 cut(s)	139, 256, 568, 778, 784, 789, 862, 995
AjiI	CACGTC	1 cut(s)	208
AjnI	CCWGG	3 cut(s)	24, 555, 1006
AluBI	AGCT	1 cut(s)	363
AluI	AGCT	1 cut(s)	363
Alw21I	GWGCWC	3 cut(s)	365, 501, 612
Alw26I	GTCTC	1 cut(s)	666
AlwI	GGATC	1 cut(s)	277
Aor51HI	AGCGCT	1 cut(s)	304
AoxI	GGCC	4 cut(s)	282, 420, 559, 825
ApoI	RAATTY	4 cut(s)	20, 251, 698, 920
AseI	ATTAAT	1 cut(s)	906
AspLEI	GCGC	1 cut(s)	305
AspS9I	GGNCC	4 cut(s)	221, 421, 461, 559
AsuC2I	CCSGG	1 cut(s)	225
AsuHPI	GGTGA	3 cut(s)	88, 427, 436
AsuNHI	GCTAGC	1 cut(s)	299
AvaII	GGWCC	2 cut(s)	221, 461
BalI	TGGCCA	1 cut(s)	827
BanII	GRGCYC	1 cut(s)	365
BbrPI	CACGTG	1 cut(s)	871
Bbv12I	GWGCWC	3 cut(s)	365, 501, 612
BccI	CCATC	6 cut(s)	19, 179, 323, 793, 836, 969
BceAI	ACGGC	1 cut(s)	871
BciT130I	CCWGG	3 cut(s)	26, 557, 1008
BclI	TGATCA	1 cut(s)	984
BcnI	CCSGG	1 cut(s)	225
BcoDI	GTCTC	1 cut(s)	666
BfaI	CTAG	2 cut(s)	300, 306
BfoI	RGCGCY	1 cut(s)	306
BisI	GCNGC	1 cut(s)	285
BlsI	GCNGC	1 cut(s)	286
Bme1390I	CCNGG	4 cut(s)	26, 225, 557, 1008
Bme18I	GGWCC	2 cut(s)	221, 461
BmgBI	CACGTC	1 cut(s)	208
BmgT120I	GGNCC	4 cut(s)	221, 421, 461, 559
BmiI	GGNNCC	3 cut(s)	223, 463, 474
BmrFI	CCNGG	4 cut(s)	26, 225, 557, 1008
BmsI	GCATC	3 cut(s)	354, 834, 856
BmtI	GCTAGC	1 cut(s)	303
BoxI	GACNNNNGTC	1 cut(s)	164
BpuEI	CTTGAG	1 cut(s)	470
BpuMI	CCSGG	1 cut(s)	225
BsaAI	YACGTR	2 cut(s)	871, 947
BsaHI	GRCGYC	1 cut(s)	177
BsaJI	CCNNGG	3 cut(s)	556, 762, 853
BsaWI	WCCGGW	1 cut(s)	218
BsaXI	ACNNNNNCTCC	2 cut(s)	347, 377
Bsc4I	CCNNNNNNNGG	3 cut(s)	487, 874, 971
Bse1I	ACTGG	2 cut(s)	476, 965
BseBI	CCWGG	3 cut(s)	26, 557, 1008
BseDI	CCNNGG	3 cut(s)	556, 762, 853
BseGI	GGATG	2 cut(s)	623, 980
BseLI	CCNNNNNNNGG	3 cut(s)	487, 874, 971
BseNI	ACTGG	2 cut(s)	476, 965
BshFI	GGCC	4 cut(s)	284, 422, 561, 827
BsiHKAI	GWGCWC	3 cut(s)	365, 501, 612
BsiSI	CCGG	3 cut(s)	219, 225, 456
BsiWI	CGTACG	1 cut(s)	294
BslFI	GGGAC	1 cut(s)	464
BslI	CCNNNNNNNGG	3 cut(s)	487, 874, 971
BsmAI	GTCTC	1 cut(s)	666
BsmFI	GGGAC	1 cut(s)	464
BsnI	GGCC	4 cut(s)	284, 422, 561, 827
Bsp1286I	GDGCHC	3 cut(s)	365, 501, 612
Bsp143I	GATC	3 cut(s)	31, 269, 984
BspACI	CCGC	2 cut(s)	285, 938
BspANI	GGCC	4 cut(s)	284, 422, 561, 827
BspLI	GGNNCC	3 cut(s)	223, 463, 474
BspOI	GCTAGC	1 cut(s)	303
BspPI	GGATC	1 cut(s)	277
BsrI	ACTGG	2 cut(s)	476, 965
BssECI	CCNNGG	3 cut(s)	556, 762, 853
BssMI	GATC	3 cut(s)	31, 269, 984
BssNI	GRCGYC	1 cut(s)	177
BssT1I	CCWWGG	1 cut(s)	762
Bst2UI	CCWGG	3 cut(s)	26, 557, 1008
Bst4CI	ACNGT	3 cut(s)	163, 642, 793
Bst6I	CTCTTC	1 cut(s)	137
BstACI	GRCGYC	1 cut(s)	177
BstBAI	YACGTR	2 cut(s)	871, 947
BstC8I	GCNNGC	2 cut(s)	301, 586
BstDEI	CTNAG	1 cut(s)	68
BstDSI	CCRYGG	1 cut(s)	853
BstEII	GGTNACC	1 cut(s)	214
BstF5I	GGATG	2 cut(s)	623, 980
BstH2I	RGCGCY	1 cut(s)	306
BstHHI	GCGC	1 cut(s)	305
BstKTI	GATC	3 cut(s)	34, 272, 987
BstMAI	GTCTC	1 cut(s)	666
BstMBI	GATC	3 cut(s)	31, 269, 984
BstMWI	GCNNNNNNNGC	3 cut(s)	176, 394, 824
BstNI	CCWGG	3 cut(s)	26, 557, 1008
BstNSI	RCATGY	2 cut(s)	505, 555
BstPAI	GACNNNNGTC	1 cut(s)	164
BstPI	GGTNACC	1 cut(s)	214
BstSCI	CCNGG	4 cut(s)	24, 223, 555, 1006
BstSNI	TACGTA	1 cut(s)	947
BstX2I	RGATCY	1 cut(s)	269
BstYI	RGATCY	1 cut(s)	269
BsuRI	GGCC	4 cut(s)	284, 422, 561, 827
BtgI	CCRYGG	1 cut(s)	853
BtrI	CACGTC	1 cut(s)	208
BtsCI	GGATG	2 cut(s)	623, 980
Cac8I	GCNNGC	2 cut(s)	301, 586
CfoI	GCGC	1 cut(s)	305
Cfr13I	GGNCC	4 cut(s)	221, 421, 461, 559
CseI	GACGC	1 cut(s)	185
Csp6I	GTAC	1 cut(s)	295
CspCI	CAANNNNNGTGG	2 cut(s)	637, 672
CviAII	CATG	5 cut(s)	280, 502, 552, 589, 628
CviQI	GTAC	1 cut(s)	295
DdeI	CTNAG	1 cut(s)	68
DpnI	GATC	3 cut(s)	33, 271, 986
DpnII	GATC	3 cut(s)	31, 269, 984
DraIII	CACNNNGTG	1 cut(s)	652
EaeI	YGGCCR	2 cut(s)	282, 825
Eam1104I	CTCTTC	1 cut(s)	137
EarI	CTCTTC	1 cut(s)	137
Ecl136II	GAGCTC	1 cut(s)	363
Eco105I	TACGTA	1 cut(s)	947
Eco130I	CCWWGG	1 cut(s)	762
Eco24I	GRGCYC	1 cut(s)	365
Eco47I	GGWCC	2 cut(s)	221, 461
Eco47III	AGCGCT	1 cut(s)	304
Eco53kI	GAGCTC	1 cut(s)	363
Eco57I	CTGAAG	1 cut(s)	791
Eco72I	CACGTG	1 cut(s)	871
Eco91I	GGTNACC	1 cut(s)	214
EcoICRI	GAGCTC	1 cut(s)	363
EcoO109I	RGGNCCY	2 cut(s)	461, 559
EcoO65I	GGTNACC	1 cut(s)	214
EcoRI	GAATTC	1 cut(s)	20
EcoRII	CCWGG	3 cut(s)	24, 555, 1006
EcoT14I	CCWWGG	1 cut(s)	762
EcoT22I	ATGCAT	1 cut(s)	849
EcoT38I	GRGCYC	1 cut(s)	365
ErhI	CCWWGG	1 cut(s)	762
FaeI	CATG	5 cut(s)	283, 505, 555, 592, 631
FaiI	YATR	9 cut(s)	61, 198, 281, 386, 503, 553, 590, 629, 745
FalI	AAGNNNNNCTT	2 cut(s)	77, 109
FaqI	GGGAC	1 cut(s)	464
FatI	CATG	5 cut(s)	279, 501, 551, 588, 627
FbaI	TGATCA	1 cut(s)	984
FblI	GTMKAC	1 cut(s)	354
Fnu4HI	GCNGC	1 cut(s)	285
FokI	GGATG	2 cut(s)	610, 987
FriOI	GRGCYC	1 cut(s)	365
Fsp4HI	GCNGC	1 cut(s)	285
FspBI	CTAG	2 cut(s)	300, 306
GlaI	GCGC	1 cut(s)	304
GluI	GCNGC	1 cut(s)	285
HaeII	RGCGCY	1 cut(s)	306
HaeIII	GGCC	4 cut(s)	284, 422, 561, 827
HapII	CCGG	3 cut(s)	219, 225, 456
HgaI	GACGC	1 cut(s)	185
HhaI	GCGC	1 cut(s)	305
Hin1I	GRCGYC	1 cut(s)	177
Hin1II	CATG	5 cut(s)	283, 505, 555, 592, 631
Hin6I	GCGC	1 cut(s)	303
HinP1I	GCGC	1 cut(s)	303
HincII	GTYRAC	1 cut(s)	523
HindII	GTYRAC	1 cut(s)	523
HinfI	GANTC	2 cut(s)	117, 599
HpaI	GTTAAC	1 cut(s)	523
HpaII	CCGG	3 cut(s)	219, 225, 456
HphI	GGTGA	3 cut(s)	88, 427, 436
Hpy166II	GTNNAC	4 cut(s)	355, 493, 523, 664
Hpy188I	TCNGA	3 cut(s)	231, 810, 971
Hpy188III	TCNNGA	6 cut(s)	139, 407, 508, 539, 769, 832
Hpy8I	GTNNAC	4 cut(s)	355, 493, 523, 664
Hpy99I	CGWCG	3 cut(s)	179, 209, 242
HpyCH4III	ACNGT	3 cut(s)	163, 642, 793
HpyCH4IV	ACGT	5 cut(s)	207, 240, 773, 870, 946
HpyCH4V	TGCA	2 cut(s)	584, 847
HpyF10VI	GCNNNNNNNGC	3 cut(s)	176, 394, 824
HpyF3I	CTNAG	1 cut(s)	68
HpySE526I	ACGT	5 cut(s)	207, 240, 773, 870, 946
Hsp92I	GRCGYC	1 cut(s)	177
Hsp92II	CATG	5 cut(s)	283, 505, 555, 592, 631
HspAI	GCGC	1 cut(s)	303
Ksp22I	TGATCA	1 cut(s)	984
KspAI	GTTAAC	1 cut(s)	523
Kzo9I	GATC	3 cut(s)	31, 269, 984
LmnI	GCTCC	2 cut(s)	368, 615
LweI	GCATC	3 cut(s)	354, 834, 856
MaeI	CTAG	2 cut(s)	300, 306
MaeII	ACGT	5 cut(s)	207, 240, 773, 870, 946
MaeIII	GTNAC	5 cut(s)	199, 214, 308, 508, 947
MalI	GATC	3 cut(s)	33, 271, 986
MboI	GATC	3 cut(s)	31, 269, 984
MboII	GAAGA	2 cut(s)	124, 127
MfeI	CAATTG	1 cut(s)	954
MflI	RGATCY	1 cut(s)	269
MhlI	GDGCHC	3 cut(s)	365, 501, 612
MlsI	TGGCCA	1 cut(s)	827
MluCI	AATT	9 cut(s)	20, 251, 367, 698, 784, 862, 892, 920, 954
MluNI	TGGCCA	1 cut(s)	827
MlyI	GAGTC	2 cut(s)	111, 608
MmeI	TCCRAC	1 cut(s)	949
MnlI	CCTC	8 cut(s)	74, 335, 414, 443, 452, 699, 737, 965
Mox20I	TGGCCA	1 cut(s)	827
Mph1103I	ATGCAT	1 cut(s)	849
MscI	TGGCCA	1 cut(s)	827
MseI	TTAA	6 cut(s)	249, 392, 522, 906, 924, 933
MslI	CAYNNNNRTG	1 cut(s)	506
Msp20I	TGGCCA	1 cut(s)	827
MspI	CCGG	3 cut(s)	219, 225, 456
MspR9I	CCNGG	4 cut(s)	26, 225, 557, 1008
MunI	CAATTG	1 cut(s)	954
MvaI	CCWGG	3 cut(s)	26, 557, 1008
MwoI	GCNNNNNNNGC	3 cut(s)	176, 394, 824
NciI	CCSGG	1 cut(s)	225
NdeII	GATC	3 cut(s)	31, 269, 984
NheI	GCTAGC	1 cut(s)	299
NlaIII	CATG	5 cut(s)	283, 505, 555, 592, 631
NlaIV	GGNNCC	3 cut(s)	223, 463, 474
NmuCI	GTSAC	2 cut(s)	308, 508
NsiI	ATGCAT	1 cut(s)	849
NspI	RCATGY	2 cut(s)	505, 555
PciI	ACATGT	1 cut(s)	501
PcsI	WCGNNNNNNNCGW	1 cut(s)	36
Pfl23II	CGTACG	1 cut(s)	294
PflFI	GACNNNGTC	1 cut(s)	225
PflMI	CCANNNNNTGG	1 cut(s)	874
PkrI	GCNGC	1 cut(s)	286
PleI	GAGTC	2 cut(s)	111, 607
PmaCI	CACGTG	1 cut(s)	871
PmlI	CACGTG	1 cut(s)	871
PpsI	GAGTC	2 cut(s)	111, 607
Ppu21I	YACGTR	2 cut(s)	871, 947
PpuMI	RGGWCCY	1 cut(s)	461
PscI	ACATGT	1 cut(s)	501
PshAI	GACNNNNGTC	1 cut(s)	164
PshBI	ATTAAT	1 cut(s)	906
Psp124BI	GAGCTC	1 cut(s)	365
Psp5II	RGGWCCY	1 cut(s)	461
Psp6I	CCWGG	3 cut(s)	24, 555, 1006
PspCI	CACGTG	1 cut(s)	871
PspEI	GGTNACC	1 cut(s)	214
PspGI	CCWGG	3 cut(s)	24, 555, 1006
PspLI	CGTACG	1 cut(s)	294
PspN4I	GGNNCC	3 cut(s)	223, 463, 474
PspPI	GGNCC	4 cut(s)	221, 421, 461, 559
PspPPI	RGGWCCY	1 cut(s)	461
PsuI	RGATCY	1 cut(s)	269
PsyI	GACNNNGTC	1 cut(s)	225
RsaI	GTAC	1 cut(s)	296
RsaNI	GTAC	1 cut(s)	295
RseI	CAYNNNNRTG	1 cut(s)	506
SacI	GAGCTC	1 cut(s)	365
SaqAI	TTAA	6 cut(s)	249, 392, 522, 906, 924, 933
SatI	GCNGC	1 cut(s)	285
Sau3AI	GATC	3 cut(s)	31, 269, 984
Sau96I	GGNCC	4 cut(s)	221, 421, 461, 559
SchI	GAGTC	2 cut(s)	111, 608
ScrFI	CCNGG	4 cut(s)	26, 225, 557, 1008
SduI	GDGCHC	3 cut(s)	365, 501, 612
SfaNI	GCATC	3 cut(s)	354, 834, 856
SinI	GGWCC	2 cut(s)	221, 461
SmiMI	CAYNNNNRTG	1 cut(s)	506
SmlI	CTYRAG	1 cut(s)	485
SmoI	CTYRAG	1 cut(s)	485
SnaBI	TACGTA	1 cut(s)	947
Sse9I	AATT	9 cut(s)	20, 251, 367, 698, 784, 862, 892, 920, 954
SsiI	CCGC	2 cut(s)	285, 938
SspMI	CTAG	2 cut(s)	300, 306
SstI	GAGCTC	1 cut(s)	365
StyD4I	CCNGG	4 cut(s)	24, 223, 555, 1006
StyI	CCWWGG	1 cut(s)	762
TaaI	ACNGT	3 cut(s)	163, 642, 793
TaiI	ACGT	5 cut(s)	210, 243, 776, 873, 949
TaqI	TCGA	6 cut(s)	30, 174, 318, 332, 729, 831
TasI	AATT	9 cut(s)	20, 251, 367, 698, 784, 862, 892, 920, 954
TauI	GCSGC	1 cut(s)	287
Tru1I	TTAA	6 cut(s)	249, 392, 522, 906, 924, 933
Tru9I	TTAA	6 cut(s)	249, 392, 522, 906, 924, 933
TseFI	GTSAC	2 cut(s)	308, 508
Tsp45I	GTSAC	2 cut(s)	308, 508
TspDTI	ATGAA	1 cut(s)	360
TspGWI	ACGGA	2 cut(s)	282, 725
Tth111I	GACNNNGTC	1 cut(s)	225
Van91I	CCANNNNNTGG	1 cut(s)	874
VpaK11BI	GGWCC	2 cut(s)	221, 461
VspI	ATTAAT	1 cut(s)	906
XapI	RAATTY	4 cut(s)	20, 251, 698, 920
XceI	RCATGY	2 cut(s)	505, 555
XcmI	CCANNNNNNNNNTGG	1 cut(s)	972
XmiI	GTMKAC	1 cut(s)	354
XspI	CTAG	2 cut(s)	300, 306
Zsp2I	ATGCAT	1 cut(s)	849

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.