Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0003803

Physical Location & Seq

Genomic Coordinates Forward (+)

15945126 .. 15946682

Gene Structure 1557 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g12930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGTCTTACTATGTTGACATCGACTCCATAACAATAGCCGATTCTCAAACCTCTCCTTTCCCCTTGAGATCGATCTTTTTATTTGTTCCCCATATGGCACGGTTAGCCTTTGTGCTAGCTTGTGCTCTAGCTCTATTGGCTTCCTCAGTGGCCTCTGGTGCAATTGTTGAGCATTCTTTTAATGTGAACAACCTGACTGTTACCCGACTGTGCCAAAATCAATCGATTACTGTAGTAAATGAGAGTTATCCCGGACCAACCATATATGCACGAGAGGGAGACACACTTATCATCCATGTTTTAAACCAGTCGCCCTATAACATTACTATTCACTGGCATGGAATCTTTCAGCTTCTGAGTGTATGGGCAGATGGGCCTTCATACGTAACTCAATGTCCTATACCCCCCGGACAAAGCTATACTTACAAATTTAATATCACTGGACAAGAAGGCACCCTTTGGTGGCATGCCCACATTTCGTGGCTCCGCGCAACTGTCCACGGAGCGCTTATAATACACCCGAAAGCTGGTCGATCCTTCCCCTTCCCCAAGCCCGCCAAAGAAGTTCCCATCATATTAGGAGATTGGTATAATGGCAATGTGGTCGACATTGAGCAAGATGGCCTATCCAAAGGAATAGCTCCTAACCTTTCAAATGCTTACACCATCAATGGACTTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0007275 GO:0008150 GO:0008152 GO:0009791 GO:0010035 GO:0010038 GO:0010228 GO:0016491 GO:0016722 GO:0022414 GO:0032501 GO:0032502 GO:0042221 GO:0046688 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0055114 GO:0061458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

228

Amino Acids

25.0

Weight (kDa)

6.27

Isoelectric Point (pI)

49.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu-oxidase_3	PF07732	62 - 176	7e-43	Multicopper oxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003803)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09220 AT3G09220
fragaria_vesca	FvH4_6g12410 FvH4_6g12430 FvH4_6g12430
malus_domestica	MD04G1142300.v1.1 MD04G1142400.v1.1 MD04G1142600.v1.1 MD04G1142900.v1.1 MD12G1157000.v1.1 MD12G1157100.v1.1 MD12G1157900.v1.1 MD16G1147100.v1.1
prunus_persica	Prupe.6G267700_v2.0.a1
pyrus_communis	pycom04g12930 pycom04g12940 pycom04g12950 pycom04g12960 pycom04g12970 pycom04g12980 pycom12g14940
rosa_chinensis	RchiOBHm_Chr3g0464241
rosa_laevigata	RLG00000024714 RLG00000036611
rosa_multiflora	Rmu_sc0005961.1_g000011 Rmu_sc0007811.1_g000009
rosa_roxburghii	Rroxscaffold_1G00005620 Rroxscaffold_6G00415910
rosa_rugosa	Rorug03G0071000
rosa_samantha	Rh3DG134200 Rh5AG501600 Rh5CG547100
rosa_wichuraiana	Rw3G010860 Rw5G046570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	512
AccB1I	GGYRCC	1 cut(s)	452
AccI	GTMKAC	1 cut(s)	606
AccII	CGCG	1 cut(s)	489
AciI	CCGC	2 cut(s)	487, 555
AclWI	GGATC	1 cut(s)	528
AcsI	RAATTY	1 cut(s)	428
AfeI	AGCGCT	1 cut(s)	507
AfiI	CCNNNNNNNGG	2 cut(s)	462, 527
AgsI	TTSAA	1 cut(s)	654
AluBI	AGCT	6 cut(s)	119, 131, 352, 417, 527, 641
AluI	AGCT	6 cut(s)	119, 131, 352, 417, 527, 641
Alw21I	GWGCWC	1 cut(s)	127
Alw26I	GTCTC	1 cut(s)	273
AlwI	GGATC	1 cut(s)	528
AlwNI	CAGNNNCTG	1 cut(s)	355
Aor51HI	AGCGCT	1 cut(s)	507
AoxI	GGCC	3 cut(s)	150, 374, 622
ApoI	RAATTY	1 cut(s)	428
AspLEI	GCGC	2 cut(s)	491, 508
AspS9I	GGNCC	2 cut(s)	254, 374
AsuC2I	CCSGG	2 cut(s)	252, 408
AsuNHI	GCTAGC	1 cut(s)	115
AvaII	GGWCC	1 cut(s)	254
BanI	GGYRCC	1 cut(s)	452
BauI	CACGAG	1 cut(s)	270
Bbv12I	GWGCWC	1 cut(s)	127
BccI	CCATC	4 cut(s)	365, 578, 614, 674
BcgI	CGANNNNNNTGC	2 cut(s)	586, 620
BcnI	CCSGG	2 cut(s)	252, 408
BcoDI	GTCTC	1 cut(s)	273
BfaI	CTAG	2 cut(s)	116, 128
BfmI	CTRYAG	1 cut(s)	231
BfoI	RGCGCY	1 cut(s)	509
Bme1390I	CCNGG	2 cut(s)	252, 408
Bme18I	GGWCC	1 cut(s)	254
BmgT120I	GGNCC	2 cut(s)	254, 374
BmiI	GGNNCC	2 cut(s)	454, 485
BmrFI	CCNGG	2 cut(s)	252, 408
BmtI	GCTAGC	1 cut(s)	119
BpuEI	CTTGAG	1 cut(s)	85
BpuMI	CCSGG	2 cut(s)	252, 408
Bsa29I	ATCGAT	2 cut(s)	71, 224
BsaAI	YACGTR	1 cut(s)	385
BsaJI	CCNNGG	2 cut(s)	406, 499
BsaXI	ACNNNNNCTCC	2 cut(s)	8, 38
Bsc4I	CCNNNNNNNGG	2 cut(s)	462, 527
Bse1I	ACTGG	3 cut(s)	307, 338, 445
Bse3DI	GCAATG	1 cut(s)	604
BseCI	ATCGAT	2 cut(s)	71, 224
BseDI	CCNNGG	2 cut(s)	406, 499
BseGI	GGATG	1 cut(s)	291
BseLI	CCNNNNNNNGG	2 cut(s)	462, 527
BseMI	GCAATG	1 cut(s)	604
BseMII	CTCAG	2 cut(s)	159, 347
BseNI	ACTGG	3 cut(s)	307, 338, 445
Bsh1236I	CGCG	1 cut(s)	489
BshFI	GGCC	3 cut(s)	152, 376, 624
BshNI	GGYRCC	1 cut(s)	452
BshVI	ATCGAT	2 cut(s)	71, 224
BsiHKAI	GWGCWC	1 cut(s)	127
BsiSI	CCGG	2 cut(s)	252, 408
BslI	CCNNNNNNNGG	2 cut(s)	462, 527
BsmAI	GTCTC	1 cut(s)	273
BsmI	GAATGC	1 cut(s)	172
BsnI	GGCC	3 cut(s)	152, 376, 624
Bsp1286I	GDGCHC	1 cut(s)	127
Bsp143I	GATC	3 cut(s)	68, 72, 533
BspACI	CCGC	2 cut(s)	487, 555
BspANI	GGCC	3 cut(s)	152, 376, 624
BspCNI	CTCAG	2 cut(s)	158, 348
BspDI	ATCGAT	2 cut(s)	71, 224
BspFNI	CGCG	1 cut(s)	489
BspLI	GGNNCC	2 cut(s)	454, 485
BspOI	GCTAGC	1 cut(s)	119
BspPI	GGATC	1 cut(s)	528
BspT107I	GGYRCC	1 cut(s)	452
BsrDI	GCAATG	1 cut(s)	604
BsrI	ACTGG	3 cut(s)	307, 338, 445
BssECI	CCNNGG	2 cut(s)	406, 499
BssMI	GATC	3 cut(s)	68, 72, 533
BssSI	CACGAG	1 cut(s)	270
Bst2BI	CACGAG	1 cut(s)	270
Bst4CI	ACNGT	5 cut(s)	102, 199, 210, 232, 496
BstBAI	YACGTR	1 cut(s)	385
BstC8I	GCNNGC	3 cut(s)	117, 468, 555
BstDEI	CTNAG	2 cut(s)	145, 356
BstDSI	CCRYGG	1 cut(s)	499
BstF5I	GGATG	1 cut(s)	291
BstFNI	CGCG	1 cut(s)	489
BstH2I	RGCGCY	1 cut(s)	509
BstHHI	GCGC	2 cut(s)	491, 508
BstKTI	GATC	3 cut(s)	71, 75, 536
BstMAI	GTCTC	1 cut(s)	273
BstMBI	GATC	3 cut(s)	68, 72, 533
BstMWI	GCNNNNNNNGC	3 cut(s)	104, 137, 158
BstNSI	RCATGY	1 cut(s)	470
BstSCI	CCNGG	2 cut(s)	250, 406
BstSFI	CTRYAG	1 cut(s)	231
BstSNI	TACGTA	1 cut(s)	385
BstUI	CGCG	1 cut(s)	489
Bsu15I	ATCGAT	2 cut(s)	71, 224
BsuRI	GGCC	3 cut(s)	152, 376, 624
BsuTUI	ATCGAT	2 cut(s)	71, 224
BtgI	CCRYGG	1 cut(s)	499
BtsCI	GGATG	1 cut(s)	291
BtsIMutI	CAGTG	3 cut(s)	153, 331, 438
Cac8I	GCNNGC	3 cut(s)	117, 468, 555
CaiI	CAGNNNCTG	1 cut(s)	355
CfoI	GCGC	2 cut(s)	491, 508
Cfr13I	GGNCC	2 cut(s)	254, 374
ClaI	ATCGAT	2 cut(s)	71, 224
CviAII	CATG	3 cut(s)	296, 338, 467
DdeI	CTNAG	2 cut(s)	145, 356
DpnI	GATC	3 cut(s)	70, 74, 535
DpnII	GATC	3 cut(s)	68, 72, 533
DraI	TTTAAA	1 cut(s)	303
Eco105I	TACGTA	1 cut(s)	385
Eco47I	GGWCC	1 cut(s)	254
Eco47III	AGCGCT	1 cut(s)	507
FaeI	CATG	3 cut(s)	299, 341, 470
FalI	AAGNNNNNCTT	4 cut(s)	406, 438, 441, 473
FatI	CATG	3 cut(s)	295, 337, 466
FauI	CCCGC	1 cut(s)	562
FauNDI	CATATG	1 cut(s)	93
FblI	GTMKAC	1 cut(s)	606
FokI	GGATG	1 cut(s)	278
FspBI	CTAG	2 cut(s)	116, 128
GlaI	GCGC	2 cut(s)	490, 507
HaeII	RGCGCY	1 cut(s)	509
HaeIII	GGCC	3 cut(s)	152, 376, 624
HapII	CCGG	2 cut(s)	252, 408
HhaI	GCGC	2 cut(s)	491, 508
Hin1II	CATG	3 cut(s)	299, 341, 470
Hin6I	GCGC	2 cut(s)	489, 506
HinP1I	GCGC	2 cut(s)	489, 506
HincII	GTYRAC	2 cut(s)	16, 607
HindII	GTYRAC	2 cut(s)	16, 607
HinfI	GANTC	3 cut(s)	23, 41, 342
HpaII	CCGG	2 cut(s)	252, 408
Hpy166II	GTNNAC	4 cut(s)	16, 187, 499, 607
Hpy188I	TCNGA	1 cut(s)	357
Hpy8I	GTNNAC	4 cut(s)	16, 187, 499, 607
HpyAV	CCTTC	4 cut(s)	387, 443, 547, 553
HpyCH4III	ACNGT	5 cut(s)	102, 199, 210, 232, 496
HpyCH4IV	ACGT	1 cut(s)	384
HpyCH4V	TGCA	2 cut(s)	161, 269
HpyF10VI	GCNNNNNNNGC	3 cut(s)	104, 137, 158
HpyF3I	CTNAG	2 cut(s)	145, 356
HpySE526I	ACGT	1 cut(s)	384
Hsp92II	CATG	3 cut(s)	299, 341, 470
HspAI	GCGC	2 cut(s)	489, 506
Kzo9I	GATC	3 cut(s)	68, 72, 533
LmnI	GCTCC	3 cut(s)	489, 503, 646
LpnPI	CCDG	8 cut(s)	141, 206, 265, 319, 320, 421, 426, 513
MaeI	CTAG	2 cut(s)	116, 128
MaeII	ACGT	1 cut(s)	384
MaeIII	GTNAC	2 cut(s)	199, 385
MalI	GATC	3 cut(s)	70, 74, 535
MboI	GATC	3 cut(s)	68, 72, 533
MfeI	CAATTG	1 cut(s)	162
MhlI	GDGCHC	1 cut(s)	127
MluCI	AATT	2 cut(s)	162, 428
MlyI	GAGTC	1 cut(s)	17
MnlI	CCTC	4 cut(s)	61, 154, 163, 268
MseI	TTAA	3 cut(s)	180, 302, 432
MslI	CAYNNNNRTG	1 cut(s)	336
MspI	CCGG	2 cut(s)	252, 408
MspR9I	CCNGG	2 cut(s)	252, 408
MunI	CAATTG	1 cut(s)	162
Mva1269I	GAATGC	1 cut(s)	172
MvnI	CGCG	1 cut(s)	489
MwoI	GCNNNNNNNGC	3 cut(s)	104, 137, 158
NciI	CCSGG	2 cut(s)	252, 408
NdeI	CATATG	1 cut(s)	93
NdeII	GATC	3 cut(s)	68, 72, 533
NheI	GCTAGC	1 cut(s)	115
NlaIII	CATG	3 cut(s)	299, 341, 470
NlaIV	GGNNCC	2 cut(s)	454, 485
NspI	RCATGY	1 cut(s)	470
PaeI	GCATGC	1 cut(s)	470
PctI	GAATGC	1 cut(s)	172
PfeI	GAWTC	2 cut(s)	41, 342
PfoI	TCCNGGA	1 cut(s)	250
PleI	GAGTC	1 cut(s)	17
PpsI	GAGTC	1 cut(s)	17
Ppu21I	YACGTR	1 cut(s)	385
PsiI	TTATAA	1 cut(s)	512
PspN4I	GGNNCC	2 cut(s)	454, 485
PspPI	GGNCC	2 cut(s)	254, 374
PstNI	CAGNNNCTG	1 cut(s)	355
RseI	CAYNNNNRTG	1 cut(s)	336
SalI	GTCGAC	1 cut(s)	605
SaqAI	TTAA	3 cut(s)	180, 302, 432
Sau3AI	GATC	3 cut(s)	68, 72, 533
Sau96I	GGNCC	2 cut(s)	254, 374
SchI	GAGTC	1 cut(s)	17
ScrFI	CCNGG	2 cut(s)	252, 408
SduI	GDGCHC	1 cut(s)	127
SfcI	CTRYAG	1 cut(s)	231
SinI	GGWCC	1 cut(s)	254
SmiMI	CAYNNNNRTG	1 cut(s)	336
SmlI	CTYRAG	1 cut(s)	64
SmoI	CTYRAG	1 cut(s)	64
SnaBI	TACGTA	1 cut(s)	385
SphI	GCATGC	1 cut(s)	470
Sse9I	AATT	2 cut(s)	162, 428
SsiI	CCGC	2 cut(s)	487, 555
SspMI	CTAG	2 cut(s)	116, 128
StyD4I	CCNGG	2 cut(s)	250, 406
TaaI	ACNGT	5 cut(s)	102, 199, 210, 232, 496
TaiI	ACGT	1 cut(s)	387
TaqI	TCGA	5 cut(s)	21, 71, 224, 532, 606
TasI	AATT	2 cut(s)	162, 428
TfiI	GAWTC	2 cut(s)	41, 342
Tru1I	TTAA	3 cut(s)	180, 302, 432
Tru9I	TTAA	3 cut(s)	180, 302, 432
TscAI	CASTG	3 cut(s)	153, 338, 445
TspDTI	ATGAA	1 cut(s)	369
TspGWI	ACGGA	1 cut(s)	516
TspRI	CASTG	3 cut(s)	153, 338, 445
VpaK11BI	GGWCC	1 cut(s)	254
XapI	RAATTY	1 cut(s)	428
XceI	RCATGY	1 cut(s)	470
XmiI	GTMKAC	1 cut(s)	606
XspI	CTAG	2 cut(s)	116, 128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.