MD12G1157900.v1.1

Belongs to the multicopper oxidase family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
Physical Location & Seq
Forward (+)
23863096 .. 23865698
2603 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1157900.v1.1.491

Sequence Viewer

Length: 1695 bp
ATGGCACACTTACCCTTTGTGCTAGCTTGTTCTCTAACTCTATTGGCTTCTTCAGTAGCCTCTGGGGCAATTGTTGAGCATTCTTTTAGTGTGAACAACTTGACTGTTAGCCGATTGTGCCGGAATCAATCGATTATTGTAGTAAATGGGTGCTATCCCGGACCAACAATACATGCACGAGATGGAGACACACTTATCGTCCACGTTTTAAACCAGTCGCCCTACAACATTACTATTCACTGGCATGGAATCTTTCAGCTTCTAAGTGCATGGGCAGATGGAGCTGCATATGTAACTCAATGCCCTATACGCCCTGGACAAAGCTTTACTTACAAATTTAATATCACCAGACAAGAAGGCACCCTTTGGTGGCATGCCCACATTTCGTGGCTCCGCGCAACCGTCCACGGCGCACTCATAATCCACCCGAAAGCCGGTCCATCCTTCCACTTCCTCAAGCCCACCGAAGAAGTTCCCATCTTATTAGGAGAGTGGTACAATGGTAATGTTGTTGACATTGAGGAAGAAGGCTTGGCTACCGGAATTGCTCCTAATAGTTCAAATGCTTACACCATAAATGGACTTCCTGGTGATCTATACGAATGCTCTCAAAATCAGACATATCAACTCAGTGTGGTGAGAGGAGATACCTACCTCCTACGCCTAATCAACGTTGCACTCAATAACCAACTCTTCTTCAAGATAGCCAATCACAAGATGATAGTTGTTGCCATCGACACCACCTACACCACTCCATATGTCACTGACGTGGTGGTTACTGGACCTGGTCAAACCACTGATGTTCTTGTCAAATTCAATCAACCTATCGGATCTTATTACATGGCCGCCACTCCGTATGCTAGCGCGAACATCGACTTTGATAACACAACCACCAGAGGCATCATCGTCTACAAGAACTCCAAGTCATCAACCCCCATTATGCCAGCCTTGCCCAACCCTCACGACACGTCGTTGGCCCACAAGTTCTATACTAATCTCACTTGCCTCATCGGCGGGCCTCAGTGGGTCCCGGTCCCACTTCAAGTGGACAAGCACATGTTCGTGACAATCGGCATGAACTTGGAAATGTGTCCCAAAAATGCCACATGTCAAGGCCCACTCTTTAGTCGATTGTCCGCTAGCATGAACAACGAGTCATTCGTGCTTCCGAGCGATACATCAATGATGGAAGCACATTTTAACAACGTGAATGGGGTTTACACCAGAGATTTTCCTGACGAGCCTCCGGTAAAGTTTGATTACACGAACACGAATGTCAGCTTCAACCCATCGTTAATATACGCACCAAAATCTACCAAGGTCAACACGCTAAAGTTCAATTCGACGGTAGAGATCGTGCTTCAAAACACAGCATTTTTGGCTATCGAGAACCATCTTATCCATCTCCACGGCTTCAATTTTCATGTGTTGGCACAAGGGTTTGGTAACTACGACCCGATTAATGACCCCAAAAAATTCAACTTCGTTAATCCGCAAATCCGTAACACAATTGGTGTGCCGGTCGGAGGATGGGCTGTGATTAGGTTTCAAGCAAATAATCCAGGAATCTGGTACATGCACTGTCATTTGGACGTTCATCTGTCATGGGGCCTAGGCTTGGCTTTTGAGGTTGAAAATGGACCTACTCTAGAATCTACTTTGCCTCCGCCACCACTTGACCTGCCCAAATGTTAG

Protein Analysis

565

Amino Acids

62.42

Weight (kDa)

6.27

Isoelectric Point (pI)

34.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase_3 PF07732 31 - 145 6.4e-42 Multicopper oxidase
Cu-oxidase PF00394 156 - 307 2.7e-41 Multicopper oxidase
Cu-oxidase_2 PF07731 410 - 546 1.3e-39 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1689
AccB1I GGYRCC 1 cut(s) 359
AccI GTMKAC 1 cut(s) 909
AccII CGCG 2 cut(s) 396, 866
AciI CCGC 6 cut(s) 394, 846, 1014, 1137, 1493, 1667
AclI AACGTT 1 cut(s) 672
AclWI GGATC 1 cut(s) 838
AcoI YGGCCR 1 cut(s) 843
AcsI RAATTY 3 cut(s) 335, 812, 1475
AcuI CTGAAG 1 cut(s) 36
AfaI GTAC 2 cut(s) 497, 1574
AfiI CCNNNNNNNGG 4 cut(s) 369, 434, 1526, 1618
AflIII ACRYGT 3 cut(s) 966, 1056, 1106
AjiI CACGTC 2 cut(s) 769, 969
AjnI CCWGG 4 cut(s) 313, 586, 784, 1561
AleI CACNNNNGTG 1 cut(s) 767
AluBI AGCT 5 cut(s) 26, 259, 284, 324, 1281
AluI AGCT 5 cut(s) 26, 259, 284, 324, 1281
Alw26I GTCTC 1 cut(s) 180
AlwI GGATC 1 cut(s) 838
AoxI GGCC 5 cut(s) 843, 975, 1016, 1114, 1609
ApeKI GCWGC 1 cut(s) 284
ApoI RAATTY 3 cut(s) 335, 812, 1475
AseI ATTAAT 1 cut(s) 1461
Asp700I GAANNNNTTC 1 cut(s) 471
AspA2I CCTAGG 1 cut(s) 1612
AspLEI GCGC 3 cut(s) 398, 413, 866
AsuC2I CCSGG 2 cut(s) 159, 1031
AsuHPI GGTGA 3 cut(s) 337, 602, 649
AsuNHI GCTAGC 3 cut(s) 22, 860, 1139
AvaII GGWCC 6 cut(s) 161, 437, 782, 1027, 1033, 1640
AvrII CCTAGG 1 cut(s) 1612
BaeI ACNNNNGTAYC 2 cut(s) 487, 520
BanI GGYRCC 1 cut(s) 359
BauI CACGAG 1 cut(s) 177
BbvI GCAGC 1 cut(s) 271
BceAI ACGGC 2 cut(s) 424, 1426
BciT130I CCWGG 4 cut(s) 315, 588, 786, 1563
BcnI CCSGG 2 cut(s) 159, 1031
BcoDI GTCTC 1 cut(s) 180
BfaI CTAG 5 cut(s) 23, 861, 1140, 1613, 1649
BfuAI ACCTGC 1 cut(s) 1689
BglI GCCNNNNNGGC 2 cut(s) 65, 1011
BisI GCNGC 2 cut(s) 285, 846
BlnI CCTAGG 1 cut(s) 1612
BlsI GCNGC 2 cut(s) 286, 847
Bme1390I CCNGG 6 cut(s) 159, 315, 588, 786, 1031, 1563
Bme18I GGWCC 6 cut(s) 161, 437, 782, 1027, 1033, 1640
BmgBI CACGTC 2 cut(s) 769, 969
BmiI GGNNCC 6 cut(s) 361, 392, 1028, 1029, 1035, 1610
BmrFI CCNGG 6 cut(s) 159, 315, 588, 786, 1031, 1563
BmsI GCATC 1 cut(s) 909
BmtI GCTAGC 3 cut(s) 26, 864, 1143
BpuEI CTTGAG 1 cut(s) 440
BpuMI CCSGG 2 cut(s) 159, 1031
Bsa29I ATCGAT 1 cut(s) 131
BsaJI CCNNGG 5 cut(s) 313, 406, 1317, 1408, 1612
BsaWI WCCGGW 2 cut(s) 539, 1246
BsaXI ACNNNNNCTCC 4 cut(s) 902, 932, 1648, 1678
Bsc4I CCNNNNNNNGG 4 cut(s) 369, 434, 1526, 1618
Bse118I RCCGGY 2 cut(s) 434, 1519
Bse1I ACTGG 3 cut(s) 214, 245, 784
BseBI CCWGG 4 cut(s) 315, 588, 786, 1563
BseCI ATCGAT 1 cut(s) 131
BseDI CCNNGG 5 cut(s) 313, 406, 1317, 1408, 1612
BseGI GGATG 2 cut(s) 440, 1535
BseLI CCNNNNNNNGG 4 cut(s) 369, 434, 1526, 1618
BseMII CTCAG 2 cut(s) 643, 1034
BseNI ACTGG 3 cut(s) 214, 245, 784
BseRI GAGGAG 1 cut(s) 657
BseXI GCAGC 1 cut(s) 271
Bsh1236I CGCG 2 cut(s) 396, 866
Bsh1285I CGRYCG 1 cut(s) 1524
BshFI GGCC 5 cut(s) 845, 977, 1018, 1116, 1611
BshNI GGYRCC 1 cut(s) 359
BshVI ATCGAT 1 cut(s) 131
BsiEI CGRYCG 1 cut(s) 1524
BsiSI CCGG 7 cut(s) 121, 159, 435, 540, 1031, 1247, 1520
BslFI GGGAC 3 cut(s) 1013, 1019, 1077
BslI CCNNNNNNNGG 4 cut(s) 369, 434, 1526, 1618
BsmAI GTCTC 1 cut(s) 180
BsmFI GGGAC 3 cut(s) 1013, 1019, 1077
BsmI GAATGC 2 cut(s) 79, 608
BsnI GGCC 5 cut(s) 845, 977, 1018, 1116, 1611
Bsp143I GATC 3 cut(s) 592, 830, 1353
BspACI CCGC 6 cut(s) 394, 846, 1014, 1137, 1493, 1667
BspANI GGCC 5 cut(s) 845, 977, 1018, 1116, 1611
BspCNI CTCAG 2 cut(s) 642, 1033
BspDI ATCGAT 1 cut(s) 131
BspFNI CGCG 2 cut(s) 396, 866
BspLI GGNNCC 6 cut(s) 361, 392, 1028, 1029, 1035, 1610
BspMI ACCTGC 1 cut(s) 1689
BspOI GCTAGC 3 cut(s) 26, 864, 1143
BspPI GGATC 1 cut(s) 838
BspT107I GGYRCC 1 cut(s) 359
BsrFI RCCGGY 2 cut(s) 434, 1519
BsrI ACTGG 3 cut(s) 214, 245, 784
BssAI RCCGGY 2 cut(s) 434, 1519
BssECI CCNNGG 5 cut(s) 313, 406, 1317, 1408, 1612
BssMI GATC 3 cut(s) 592, 830, 1353
BssSI CACGAG 1 cut(s) 177
BssT1I CCWWGG 2 cut(s) 1317, 1612
Bst2BI CACGAG 1 cut(s) 177
Bst2UI CCWGG 4 cut(s) 315, 588, 786, 1563
Bst4CI ACNGT 4 cut(s) 106, 403, 1348, 1583
Bst6I CTCTTC 1 cut(s) 698
BstC8I GCNNGC 6 cut(s) 24, 375, 862, 945, 1016, 1141
BstDEI CTNAG 3 cut(s) 263, 629, 1020
BstDSI CCRYGG 2 cut(s) 406, 1408
BstF5I GGATG 2 cut(s) 440, 1535
BstFNI CGCG 2 cut(s) 396, 866
BstHHI GCGC 3 cut(s) 398, 413, 866
BstKTI GATC 3 cut(s) 595, 833, 1356
BstMAI GTCTC 1 cut(s) 180
BstMBI GATC 3 cut(s) 592, 830, 1353
BstMCI CGRYCG 1 cut(s) 1524
BstMWI GCNNNNNNNGC 7 cut(s) 65, 117, 281, 309, 949, 1011, 1379
BstNI CCWGG 4 cut(s) 315, 588, 786, 1563
BstNSI RCATGY 5 cut(s) 176, 377, 1060, 1110, 1579
BstSCI CCNGG 6 cut(s) 157, 313, 586, 784, 1029, 1561
BstUI CGCG 2 cut(s) 396, 866
BstV1I GCAGC 1 cut(s) 271
BstX2I RGATCY 1 cut(s) 830
BstXI CCANNNNNNTGG 1 cut(s) 1569
BstYI RGATCY 1 cut(s) 830
Bsu15I ATCGAT 1 cut(s) 131
BsuRI GGCC 5 cut(s) 845, 977, 1018, 1116, 1611
BsuTUI ATCGAT 1 cut(s) 131
BtgI CCRYGG 2 cut(s) 406, 1408
BtrI CACGTC 2 cut(s) 769, 969
BtsCI GGATG 2 cut(s) 440, 1535
BtsIMutI CAGTG 6 cut(s) 238, 637, 762, 795, 1028, 1579
BveI ACCTGC 1 cut(s) 1689
Cac8I GCNNGC 6 cut(s) 24, 375, 862, 945, 1016, 1141
CfoI GCGC 3 cut(s) 398, 413, 866
Cfr10I RCCGGY 2 cut(s) 434, 1519
ClaI ATCGAT 1 cut(s) 131
CsiI ACCWGGT 1 cut(s) 784
Csp6I GTAC 2 cut(s) 496, 1573
CviQI GTAC 2 cut(s) 496, 1573
DdeI CTNAG 3 cut(s) 263, 629, 1020
DpnI GATC 3 cut(s) 594, 832, 1355
DpnII GATC 3 cut(s) 592, 830, 1353
DraI TTTAAA 1 cut(s) 210
EaeI YGGCCR 1 cut(s) 843
Eam1104I CTCTTC 1 cut(s) 698
EarI CTCTTC 1 cut(s) 698
EciI GGCGGA 1 cut(s) 1656
Eco130I CCWWGG 2 cut(s) 1317, 1612
Eco47I GGWCC 6 cut(s) 161, 437, 782, 1027, 1033, 1640
Eco57I CTGAAG 1 cut(s) 36
EcoO109I RGGNCCY 2 cut(s) 1027, 1609
EcoRII CCWGG 4 cut(s) 313, 586, 784, 1561
EcoT14I CCWWGG 2 cut(s) 1317, 1612
ErhI CCWWGG 2 cut(s) 1317, 1612
FalI AAGNNNNNCTT 4 cut(s) 313, 345, 348, 380
FaqI GGGAC 3 cut(s) 1013, 1019, 1077
FauI CCCGC 1 cut(s) 1007
FauNDI CATATG 2 cut(s) 289, 757
FblI GTMKAC 1 cut(s) 909
Fnu4HI GCNGC 2 cut(s) 285, 846
FokI GGATG 2 cut(s) 427, 1542
Fsp4HI GCNGC 2 cut(s) 285, 846
FspBI CTAG 5 cut(s) 23, 861, 1140, 1613, 1649
GlaI GCGC 3 cut(s) 397, 412, 865
GluI GCNGC 2 cut(s) 285, 846
HaeIII GGCC 5 cut(s) 845, 977, 1018, 1116, 1611
HapII CCGG 7 cut(s) 121, 159, 435, 540, 1031, 1247, 1520
HhaI GCGC 3 cut(s) 398, 413, 866
Hin6I GCGC 3 cut(s) 396, 411, 864
HinP1I GCGC 3 cut(s) 396, 411, 864
HincII GTYRAC 2 cut(s) 514, 1324
HindII GTYRAC 2 cut(s) 514, 1324
HindIII AAGCTT 1 cut(s) 322
HinfI GANTC 5 cut(s) 124, 249, 1154, 1566, 1652
HpaII CCGG 7 cut(s) 121, 159, 435, 540, 1031, 1247, 1520
HphI GGTGA 3 cut(s) 337, 602, 649
Hpy166II GTNNAC 8 cut(s) 94, 202, 406, 514, 910, 1048, 1219, 1324
Hpy188I TCNGA 4 cut(s) 618, 830, 1170, 1526
Hpy188III TCNNGA 6 cut(s) 700, 962, 1063, 1235, 1387, 1649
Hpy8I GTNNAC 8 cut(s) 94, 202, 406, 514, 910, 1048, 1219, 1324
Hpy99I CGWCG 2 cut(s) 973, 1348
HpyAV CCTTC 3 cut(s) 350, 454, 521
HpyCH4III ACNGT 4 cut(s) 106, 403, 1348, 1583
HpyCH4IV ACGT 6 cut(s) 204, 672, 768, 968, 1206, 1593
HpyCH4V TGCA 5 cut(s) 176, 269, 287, 677, 1579
HpyF10VI GCNNNNNNNGC 7 cut(s) 65, 117, 281, 309, 949, 1011, 1379
HpyF3I CTNAG 3 cut(s) 263, 629, 1020
HpySE526I ACGT 6 cut(s) 204, 672, 768, 968, 1206, 1593
HspAI GCGC 3 cut(s) 396, 411, 864
KflI GGGWCCC 1 cut(s) 1027
Kzo9I GATC 3 cut(s) 592, 830, 1353
LmnI GCTCC 3 cut(s) 281, 396, 553
Lsp1109I GCAGC 1 cut(s) 271
LweI GCATC 1 cut(s) 909
MabI ACCWGGT 1 cut(s) 784
MaeI CTAG 5 cut(s) 23, 861, 1140, 1613, 1649
MaeII ACGT 6 cut(s) 204, 672, 768, 968, 1206, 1593
MaeIII GTNAC 6 cut(s) 292, 760, 775, 1063, 1445, 1502
MalI GATC 3 cut(s) 594, 832, 1355
MboI GATC 3 cut(s) 592, 830, 1353
MboII GAAGA 5 cut(s) 42, 479, 536, 685, 688
MfeI CAATTG 2 cut(s) 69, 1509
MflI RGATCY 1 cut(s) 830
MluCI AATT 8 cut(s) 69, 335, 543, 812, 1339, 1417, 1475, 1509
MlyI GAGTC 1 cut(s) 1163
MmeI TCCRAC 1 cut(s) 1504
MroXI GAANNNNTTC 1 cut(s) 471
MseI TTAA 6 cut(s) 209, 339, 1200, 1295, 1461, 1488
MslI CAYNNNNRTG 3 cut(s) 243, 767, 1061
MspI CCGG 7 cut(s) 121, 159, 435, 540, 1031, 1247, 1520
MspR9I CCNGG 6 cut(s) 159, 315, 588, 786, 1031, 1563
MunI CAATTG 2 cut(s) 69, 1509
Mva1269I GAATGC 2 cut(s) 79, 608
MvaI CCWGG 4 cut(s) 315, 588, 786, 1563
MvnI CGCG 2 cut(s) 396, 866
MwoI GCNNNNNNNGC 7 cut(s) 65, 117, 281, 309, 949, 1011, 1379
NciI CCSGG 2 cut(s) 159, 1031
NdeI CATATG 2 cut(s) 289, 757
NdeII GATC 3 cut(s) 592, 830, 1353
NheI GCTAGC 3 cut(s) 22, 860, 1139
NlaIV GGNNCC 6 cut(s) 361, 392, 1028, 1029, 1035, 1610
NmuCI GTSAC 2 cut(s) 760, 1063
NspI RCATGY 5 cut(s) 176, 377, 1060, 1110, 1579
OliI CACNNNNGTG 1 cut(s) 767
PaeI GCATGC 1 cut(s) 377
PciI ACATGT 2 cut(s) 1056, 1106
PcsI WCGNNNNNNNCGW 1 cut(s) 1158
PctI GAATGC 2 cut(s) 79, 608
PdmI GAANNNNTTC 1 cut(s) 471
PfeI GAWTC 4 cut(s) 124, 249, 1566, 1652
PflFI GACNNNGTC 1 cut(s) 786
PfoI TCCNGGA 2 cut(s) 157, 1561
PkrI GCNGC 2 cut(s) 286, 847
PleI GAGTC 1 cut(s) 1162
PpsI GAGTC 1 cut(s) 1162
PpuMI RGGWCCY 1 cut(s) 1027
PscI ACATGT 2 cut(s) 1056, 1106
PshBI ATTAAT 1 cut(s) 1461
Psp1406I AACGTT 1 cut(s) 672
Psp5II RGGWCCY 1 cut(s) 1027
Psp6I CCWGG 4 cut(s) 313, 586, 784, 1561
PspGI CCWGG 4 cut(s) 313, 586, 784, 1561
PspN4I GGNNCC 6 cut(s) 361, 392, 1028, 1029, 1035, 1610
PspPPI RGGWCCY 1 cut(s) 1027
PsuI RGATCY 1 cut(s) 830
PsyI GACNNNGTC 1 cut(s) 786
RsaI GTAC 2 cut(s) 497, 1574
RsaNI GTAC 2 cut(s) 496, 1573
RseI CAYNNNNRTG 3 cut(s) 243, 767, 1061
SaqAI TTAA 6 cut(s) 209, 339, 1200, 1295, 1461, 1488
SatI GCNGC 2 cut(s) 285, 846
Sau3AI GATC 3 cut(s) 592, 830, 1353
SchI GAGTC 1 cut(s) 1163
ScrFI CCNGG 6 cut(s) 159, 315, 588, 786, 1031, 1563
SexAI ACCWGGT 1 cut(s) 784
SfaNI GCATC 1 cut(s) 909
SinI GGWCC 6 cut(s) 161, 437, 782, 1027, 1033, 1640
SmiMI CAYNNNNRTG 3 cut(s) 243, 767, 1061
SmlI CTYRAG 1 cut(s) 455
SmoI CTYRAG 1 cut(s) 455
SphI GCATGC 1 cut(s) 377
Sse9I AATT 8 cut(s) 69, 335, 543, 812, 1339, 1417, 1475, 1509
SsiI CCGC 6 cut(s) 394, 846, 1014, 1137, 1493, 1667
SspMI CTAG 5 cut(s) 23, 861, 1140, 1613, 1649
StyD4I CCNGG 6 cut(s) 157, 313, 586, 784, 1029, 1561
StyI CCWWGG 2 cut(s) 1317, 1612
TaaI ACNGT 4 cut(s) 106, 403, 1348, 1583
TaiI ACGT 6 cut(s) 207, 675, 771, 971, 1209, 1596
TaqI TCGA 6 cut(s) 131, 735, 873, 1129, 1343, 1386
TasI AATT 8 cut(s) 69, 335, 543, 812, 1339, 1417, 1475, 1509
TauI GCSGC 1 cut(s) 848
TfiI GAWTC 4 cut(s) 124, 249, 1566, 1652
Tru1I TTAA 6 cut(s) 209, 339, 1200, 1295, 1461, 1488
Tru9I TTAA 6 cut(s) 209, 339, 1200, 1295, 1461, 1488
TscAI CASTG 6 cut(s) 245, 637, 769, 802, 1028, 1586
TseFI GTSAC 2 cut(s) 760, 1063
TseI GCWGC 1 cut(s) 284
Tsp45I GTSAC 2 cut(s) 760, 1063
TspDTI ATGAA 4 cut(s) 1091, 1160, 1412, 1586
TspGWI ACGGA 2 cut(s) 843, 1490
TspRI CASTG 6 cut(s) 245, 637, 769, 802, 1028, 1586
Tth111I GACNNNGTC 1 cut(s) 786
VpaK11BI GGWCC 6 cut(s) 161, 437, 782, 1027, 1033, 1640
VspI ATTAAT 1 cut(s) 1461
XapI RAATTY 3 cut(s) 335, 812, 1475
XbaI TCTAGA 1 cut(s) 1648
XceI RCATGY 5 cut(s) 176, 377, 1060, 1110, 1579
XmaJI CCTAGG 1 cut(s) 1612
XmiI GTMKAC 1 cut(s) 909
XmnI GAANNNNTTC 1 cut(s) 471
XspI CTAG 5 cut(s) 23, 861, 1140, 1613, 1649
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.