Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0003803

Physical Location & Seq

Genomic Coordinates Forward (+)

23226261 .. 23228683

Gene Structure 2423 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1142600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1701 bp

ATGGCACGCTTAGCCTTTGTGCTAGCTTGTGCTCTAGCTCTATTAGCTTCCTCAGTAGCCTCTGGTGCAATTGTTGAGCATTCTTTTAATGTGAACAACCTGACTGTTAGCCGACTATGTCAGAATCAATCAATTACTGTAGTAAATGGAAGTTATCCAGGACCAGCCATATATGCACGAGATGGAGACACACTTATTGTCCACGTTTTAAACCAATCGCCCTATAACATTAGTATTCACTGGCATGGAATCTTTCAGCTTCTGAGTCCATGGGCGGATGGACCTGTATATGTAACTCAATGCCCTATACGCCCCGGACAAAGCTATACTTACAAATTTAATATCACCGGACAAGAAGGCACCCTTTGGTGGCATGCACACATTTCGTGGCTCCGCGCAACCGTCCACGGAGCGCTCATAATCCACCCGAAAGCCGGTCGATCCTTCCCCTTCCTCAAGCCCGCCAAAGAAGTTCCCATCTTATTAGGAGAGTGGTACAATGGCAATGTGGTCGACATTGAGGAAGAAGGCCTATCTAAAGGAATTGCTCCTAACATTTCAAATGCTTACACCATCAATGGACTTCCCGGCGATCTCTACGACTGCTCTCAAAATCAAACATATCAGCTAAGTGTGGTGAGAGGAAAGACCTACTTGCTTCGCCTAATCAACGCTGGACTCAATACCCAGCTTTTCTTCAAGATAGCCAATCACAATATGACAGTTGTCGCCATCGACGCCACCTACACCACTCCTTACATCACCGACGTGGTGGTAACCGGACCTGGTCAGACCACCGACGTTCTTGTCAAATTCAATCAACCTATTGGATCTTATTACATGGCCGCCACTCCATACGCTAGCGCTAGTGACACCATCGACTTTGATAACTCGACCACCAGAGGCATCATCGTCTACAAGAGCGCCAATTCATCAACCCCCATTATGCCCTCAATGCCCAACCCTCACGACACGCCATTGGCCCACAAGTTCCTCACCAATCTCACCAGCCTCGCCAAAGGGCCCCAATGGGTCCCAGTACCACTCAAGGTGGATGAGCACATGTTCGTGACAATTGGCGTCAACTTGGAGATGTGTCCAGAAAATGCCACGTGTCAGGGCCTATTCAATAACCGAATGTCCGCAAGCATGAACAACGAGTCATTCGTGCTCCCAAGCAATACATCCATGCTGGAAGCACAATTTCACAATGTGAGCAGGGTTTACACCAGAGACTTTCCTGACGAGCCTCCATTCAAATTTGACTACACGGACACAAACATCAGCCTCGACCTATCATTGATATACGCACCAAAATCAACCAAGGTCAAGACACTGAAGTTCAATTCGACGGTGGAGATGGTGCTTCAGAACATAGCATTTTTGGCCATCGAGAACCACCCAATGCATCTCCACGGCTTCAATTTCCACGTGTTGGCACAAGGGTTTGGAAATTACGACCCGATTAATGACCCCAAAAAATTTAACTTAGTTAATCCGCAAATACGTAACACAATTGGTGTGCCAGTCGGAGGATGGGCTGTGATCAGGTTTCAAGCAAATAATCCTGGTATCTGGTACATGCACTGTCATTTGGACGTTCATCTGCCATGGGGGCTGGGAATGGCTTTTGAGGTTGAAAATGGACCAACACCAGAATCTACTTTGCCTCCACCACCACTTGATTTGCCTAAATGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0007275 GO:0008150 GO:0008152 GO:0009791 GO:0010035 GO:0010038 GO:0010228 GO:0016491 GO:0016722 GO:0022414 GO:0032501 GO:0032502 GO:0042221 GO:0046688 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0055114 GO:0061458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

567

Amino Acids

62.57

Weight (kDa)

6.27

Isoelectric Point (pI)

37.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu-oxidase_3	PF07732	31 - 145	1.1e-41	Multicopper oxidase
Cu-oxidase	PF00394	157 - 308	2.8e-42	Multicopper oxidase
Cu-oxidase_2	PF07731	413 - 548	8.1e-40	Multicopper oxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003803)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09220 AT3G09220
fragaria_vesca	FvH4_6g12410 FvH4_6g12430 FvH4_6g12430
malus_domestica	MD04G1142300.v1.1 MD04G1142400.v1.1 MD04G1142600.v1.1 MD04G1142900.v1.1 MD12G1157000.v1.1 MD12G1157100.v1.1 MD12G1157900.v1.1 MD16G1147100.v1.1
prunus_persica	Prupe.6G267700_v2.0.a1
pyrus_communis	pycom04g12930 pycom04g12940 pycom04g12950 pycom04g12960 pycom04g12970 pycom04g12980 pycom12g14940
rosa_chinensis	RchiOBHm_Chr3g0464241
rosa_laevigata	RLG00000024714 RLG00000036611
rosa_multiflora	Rmu_sc0005961.1_g000011 Rmu_sc0007811.1_g000009
rosa_roxburghii	Rroxscaffold_1G00005620 Rroxscaffold_6G00415910
rosa_rugosa	Rorug03G0071000
rosa_samantha	Rh3DG134200 Rh5AG501600 Rh5CG547100
rosa_wichuraiana	Rw3G010860 Rw5G046570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	806
AccB1I	GGYRCC	1 cut(s)	359
AccB7I	CCANNNNNTGG	1 cut(s)	1435
AccI	GTMKAC	2 cut(s)	513, 915
AccII	CGCG	1 cut(s)	396
AciI	CCGC	6 cut(s)	275, 394, 462, 846, 1143, 1499
AclWI	GGATC	2 cut(s)	435, 838
AcoI	YGGCCR	2 cut(s)	843, 1386
AcsI	RAATTY	4 cut(s)	335, 812, 1259, 1481
AcuI	CTGAAG	2 cut(s)	1352, 1358
AcvI	CACGTG	2 cut(s)	1113, 1432
AcyI	GRCGYC	2 cut(s)	738, 1080
AdeI	CACNNNGTG	1 cut(s)	1213
AfaI	GTAC	3 cut(s)	497, 1041, 1580
AfeI	AGCGCT	2 cut(s)	414, 865
AfiI	CCNNNNNNNGG	4 cut(s)	369, 434, 1435, 1532
AflIII	ACRYGT	3 cut(s)	1062, 1112, 1431
AgsI	TTSAA	9 cut(s)	561, 700, 817, 1129, 1258, 1345, 1423, 1556, 1640
AjiI	CACGTC	1 cut(s)	769
AjnI	CCWGG	3 cut(s)	157, 784, 1567
AleI	CACNNNNGTG	1 cut(s)	767
AluBI	AGCT	7 cut(s)	26, 38, 47, 259, 324, 628, 691
AluI	AGCT	7 cut(s)	26, 38, 47, 259, 324, 628, 691
Alw21I	GWGCWC	3 cut(s)	34, 1062, 1173
Alw26I	GTCTC	2 cut(s)	180, 1227
AlwI	GGATC	2 cut(s)	435, 838
AlwNI	CAGNNNCTG	1 cut(s)	262
Aor51HI	AGCGCT	2 cut(s)	414, 865
AoxI	GGCC	6 cut(s)	529, 843, 981, 1022, 1120, 1386
ApaI	GGGCCC	1 cut(s)	1026
ApoI	RAATTY	4 cut(s)	335, 812, 1259, 1481
AseI	ATTAAT	1 cut(s)	1467
AspLEI	GCGC	4 cut(s)	398, 415, 866, 926
AspS9I	GGNCC	9 cut(s)	161, 281, 782, 982, 1022, 1023, 1033, 1120, 1646
AsuC2I	CCSGG	2 cut(s)	315, 588
AsuHPI	GGTGA	5 cut(s)	337, 649, 754, 988, 997
AsuNHI	GCTAGC	2 cut(s)	22, 860
AvaII	GGWCC	5 cut(s)	161, 281, 782, 1033, 1646
BaeGI	GKGCMC	1 cut(s)	1026
BalI	TGGCCA	1 cut(s)	1388
BanI	GGYRCC	1 cut(s)	359
BanII	GRGCYC	1 cut(s)	1026
BauI	CACGAG	1 cut(s)	177
BbrPI	CACGTG	2 cut(s)	1113, 1432
Bbv12I	GWGCWC	3 cut(s)	34, 1062, 1173
BccI	CCATC	9 cut(s)	176, 272, 485, 581, 740, 884, 1354, 1397, 1530
BceAI	ACGGC	1 cut(s)	1432
BcgI	CGANNNNNNTGC	4 cut(s)	366, 400, 493, 527
BciT130I	CCWGG	3 cut(s)	159, 786, 1569
BclI	TGATCA	1 cut(s)	1545
BcnI	CCSGG	2 cut(s)	315, 588
BcoDI	GTCTC	2 cut(s)	180, 1227
BfaI	CTAG	4 cut(s)	23, 35, 861, 867
BfmI	CTRYAG	1 cut(s)	138
BfoI	RGCGCY	3 cut(s)	416, 867, 927
BglI	GCCNNNNNGGC	1 cut(s)	1615
BisI	GCNGC	1 cut(s)	846
BlpI	GCTNAGC	1 cut(s)	10
BlsI	GCNGC	1 cut(s)	847
Bme1390I	CCNGG	5 cut(s)	159, 315, 588, 786, 1569
Bme18I	GGWCC	5 cut(s)	161, 281, 782, 1033, 1646
BmgBI	CACGTC	1 cut(s)	769
BmgT120I	GGNCC	9 cut(s)	161, 281, 782, 982, 1022, 1023, 1033, 1120, 1646
BmiI	GGNNCC	6 cut(s)	361, 392, 1024, 1025, 1034, 1035
BmrFI	CCNGG	5 cut(s)	159, 315, 588, 786, 1569
BmrI	ACTGGG	1 cut(s)	1031
BmsI	GCATC	2 cut(s)	915, 1417
BmtI	GCTAGC	2 cut(s)	26, 864
BmuI	ACTGGG	1 cut(s)	1031
BoxI	GACNNNNGTC	1 cut(s)	725
Bpu1102I	GCTNAGC	1 cut(s)	10
BpuEI	CTTGAG	2 cut(s)	440, 1031
BpuMI	CCSGG	2 cut(s)	315, 588
BsaAI	YACGTR	3 cut(s)	1113, 1432, 1508
BsaHI	GRCGYC	2 cut(s)	738, 1080
BsaJI	CCNNGG	6 cut(s)	269, 313, 406, 1323, 1414, 1610
BsaWI	WCCGGW	2 cut(s)	347, 779
BsaXI	ACNNNNNCTCC	2 cut(s)	1654, 1684
Bsc4I	CCNNNNNNNGG	4 cut(s)	369, 434, 1435, 1532
Bse118I	RCCGGY	1 cut(s)	434
Bse1I	ACTGG	3 cut(s)	245, 1037, 1526
Bse3DI	GCAATG	1 cut(s)	511
BseBI	CCWGG	3 cut(s)	159, 786, 1569
BseDI	CCNNGG	6 cut(s)	269, 313, 406, 1323, 1414, 1610
BseGI	GGATG	4 cut(s)	283, 1060, 1184, 1541
BseLI	CCNNNNNNNGG	4 cut(s)	369, 434, 1435, 1532
BseMI	GCAATG	1 cut(s)	511
BseMII	CTCAG	2 cut(s)	66, 254
BseNI	ACTGG	3 cut(s)	245, 1037, 1526
BseSI	GKGCMC	1 cut(s)	1026
BseYI	CCCAGC	2 cut(s)	687, 1618
Bsh1236I	CGCG	1 cut(s)	396
Bsh1285I	CGRYCG	1 cut(s)	439
BshFI	GGCC	6 cut(s)	531, 845, 983, 1024, 1122, 1388
BshNI	GGYRCC	1 cut(s)	359
BsiEI	CGRYCG	1 cut(s)	439
BsiHKAI	GWGCWC	3 cut(s)	34, 1062, 1173
BsiSI	CCGG	5 cut(s)	315, 348, 435, 588, 780
BslFI	GGGAC	1 cut(s)	1019
BslI	CCNNNNNNNGG	4 cut(s)	369, 434, 1435, 1532
BsmAI	GTCTC	2 cut(s)	180, 1227
BsmFI	GGGAC	1 cut(s)	1019
BsmI	GAATGC	1 cut(s)	79
BsnI	GGCC	6 cut(s)	531, 845, 983, 1024, 1122, 1388
Bsp120I	GGGCCC	1 cut(s)	1022
Bsp1286I	GDGCHC	4 cut(s)	34, 1026, 1062, 1173
Bsp143I	GATC	4 cut(s)	440, 592, 830, 1545
Bsp1720I	GCTNAGC	1 cut(s)	10
Bsp19I	CCATGG	2 cut(s)	269, 1610
BspACI	CCGC	6 cut(s)	275, 394, 462, 846, 1143, 1499
BspANI	GGCC	6 cut(s)	531, 845, 983, 1024, 1122, 1388
BspCNI	CTCAG	2 cut(s)	65, 255
BspFNI	CGCG	1 cut(s)	396
BspLI	GGNNCC	6 cut(s)	361, 392, 1024, 1025, 1034, 1035
BspOI	GCTAGC	2 cut(s)	26, 864
BspPI	GGATC	2 cut(s)	435, 838
BspT107I	GGYRCC	1 cut(s)	359
BsrDI	GCAATG	1 cut(s)	511
BsrFI	RCCGGY	1 cut(s)	434
BsrI	ACTGG	3 cut(s)	245, 1037, 1526
BssAI	RCCGGY	1 cut(s)	434
BssECI	CCNNGG	6 cut(s)	269, 313, 406, 1323, 1414, 1610
BssMI	GATC	4 cut(s)	440, 592, 830, 1545
BssNI	GRCGYC	2 cut(s)	738, 1080
BssSI	CACGAG	1 cut(s)	177
BssT1I	CCWWGG	3 cut(s)	269, 1323, 1610
Bst2BI	CACGAG	1 cut(s)	177
Bst2UI	CCWGG	3 cut(s)	159, 786, 1569
Bst4CI	ACNGT	6 cut(s)	106, 139, 403, 724, 1354, 1589
BstACI	GRCGYC	2 cut(s)	738, 1080
BstBAI	YACGTR	3 cut(s)	1113, 1432, 1508
BstC8I	GCNNGC	6 cut(s)	7, 24, 375, 462, 862, 1147
BstDEI	CTNAG	5 cut(s)	10, 52, 263, 629, 1489
BstDSI	CCRYGG	4 cut(s)	269, 406, 1414, 1610
BstEII	GGTNACC	1 cut(s)	775
BstF5I	GGATG	4 cut(s)	283, 1060, 1184, 1541
BstFNI	CGCG	1 cut(s)	396
BstH2I	RGCGCY	3 cut(s)	416, 867, 927
BstHHI	GCGC	4 cut(s)	398, 415, 866, 926
BstKTI	GATC	4 cut(s)	443, 595, 833, 1548
BstMAI	GTCTC	2 cut(s)	180, 1227
BstMBI	GATC	4 cut(s)	440, 592, 830, 1545
BstMCI	CGRYCG	1 cut(s)	439
BstMWI	GCNNNNNNNGC	9 cut(s)	11, 44, 65, 173, 309, 737, 955, 1385, 1615
BstNI	CCWGG	3 cut(s)	159, 786, 1569
BstNSI	RCATGY	3 cut(s)	377, 1066, 1585
BstPAI	GACNNNNGTC	1 cut(s)	725
BstPI	GGTNACC	1 cut(s)	775
BstSCI	CCNGG	5 cut(s)	157, 313, 586, 784, 1567
BstSFI	CTRYAG	1 cut(s)	138
BstSLI	GKGCMC	1 cut(s)	1026
BstSNI	TACGTA	1 cut(s)	1508
BstUI	CGCG	1 cut(s)	396
BstX2I	RGATCY	1 cut(s)	830
BstYI	RGATCY	1 cut(s)	830
BsuRI	GGCC	6 cut(s)	531, 845, 983, 1024, 1122, 1388
BtgI	CCRYGG	4 cut(s)	269, 406, 1414, 1610
BtrI	CACGTC	1 cut(s)	769
BtsCI	GGATG	4 cut(s)	283, 1060, 1184, 1541
BtsIMutI	CAGTG	3 cut(s)	238, 1334, 1585
Cac8I	GCNNGC	6 cut(s)	7, 24, 375, 462, 862, 1147
CaiI	CAGNNNCTG	1 cut(s)	262
CfoI	GCGC	4 cut(s)	398, 415, 866, 926
Cfr10I	RCCGGY	1 cut(s)	434
Cfr13I	GGNCC	9 cut(s)	161, 281, 782, 982, 1022, 1023, 1033, 1120, 1646
CseI	GACGC	2 cut(s)	746, 1069
CsiI	ACCWGGT	1 cut(s)	784
Csp6I	GTAC	3 cut(s)	496, 1040, 1579
CspCI	CAANNNNNGTGG	1 cut(s)	1668
CviAII	CATG	9 cut(s)	245, 270, 374, 841, 1063, 1150, 1189, 1582, 1611
CviQI	GTAC	3 cut(s)	496, 1040, 1579
DdeI	CTNAG	5 cut(s)	10, 52, 263, 629, 1489
DpnI	GATC	4 cut(s)	442, 594, 832, 1547
DpnII	GATC	4 cut(s)	440, 592, 830, 1545
DraI	TTTAAA	1 cut(s)	210
DraIII	CACNNNGTG	1 cut(s)	1213
DrdI	GACNNNNNNGTC	1 cut(s)	806
DseDI	GACNNNNNNGTC	1 cut(s)	806
EaeI	YGGCCR	2 cut(s)	843, 1386
EciI	GGCGGA	1 cut(s)	290
Eco105I	TACGTA	1 cut(s)	1508
Eco130I	CCWWGG	3 cut(s)	269, 1323, 1610
Eco147I	AGGCCT	1 cut(s)	531
Eco24I	GRGCYC	1 cut(s)	1026
Eco47I	GGWCC	5 cut(s)	161, 281, 782, 1033, 1646
Eco47III	AGCGCT	2 cut(s)	414, 865
Eco57I	CTGAAG	2 cut(s)	1352, 1358
Eco72I	CACGTG	2 cut(s)	1113, 1432
Eco91I	GGTNACC	1 cut(s)	775
EcoO109I	RGGNCCY	4 cut(s)	1022, 1023, 1033, 1120
EcoO65I	GGTNACC	1 cut(s)	775
EcoRII	CCWGG	3 cut(s)	157, 784, 1567
EcoT14I	CCWWGG	3 cut(s)	269, 1323, 1610
EcoT22I	ATGCAT	1 cut(s)	1410
EcoT38I	GRGCYC	1 cut(s)	1026
ErhI	CCWWGG	3 cut(s)	269, 1323, 1610
FaeI	CATG	9 cut(s)	248, 273, 377, 844, 1066, 1153, 1192, 1585, 1614
FalI	AAGNNNNNCTT	6 cut(s)	313, 345, 348, 380, 638, 670
FaqI	GGGAC	1 cut(s)	1019
FatI	CATG	9 cut(s)	244, 269, 373, 840, 1062, 1149, 1188, 1581, 1610
FauI	CCCGC	1 cut(s)	469
FbaI	TGATCA	1 cut(s)	1545
FblI	GTMKAC	2 cut(s)	513, 915
Fnu4HI	GCNGC	1 cut(s)	846
FokI	GGATG	4 cut(s)	290, 1067, 1171, 1548
FriOI	GRGCYC	1 cut(s)	1026
Fsp4HI	GCNGC	1 cut(s)	846
FspBI	CTAG	4 cut(s)	23, 35, 861, 867
GlaI	GCGC	4 cut(s)	397, 414, 865, 925
GluI	GCNGC	1 cut(s)	846
GsaI	CCCAGC	2 cut(s)	691, 1622
HaeII	RGCGCY	3 cut(s)	416, 867, 927
HaeIII	GGCC	6 cut(s)	531, 845, 983, 1024, 1122, 1388
HapII	CCGG	5 cut(s)	315, 348, 435, 588, 780
HgaI	GACGC	2 cut(s)	746, 1069
HhaI	GCGC	4 cut(s)	398, 415, 866, 926
Hin1I	GRCGYC	2 cut(s)	738, 1080
Hin1II	CATG	9 cut(s)	248, 273, 377, 844, 1066, 1153, 1192, 1585, 1614
Hin6I	GCGC	4 cut(s)	396, 413, 864, 924
HinP1I	GCGC	4 cut(s)	396, 413, 864, 924
HincII	GTYRAC	2 cut(s)	514, 1084
HindII	GTYRAC	2 cut(s)	514, 1084
HinfI	GANTC	6 cut(s)	124, 249, 265, 678, 1160, 1658
HpaII	CCGG	5 cut(s)	315, 348, 435, 588, 780
HphI	GGTGA	5 cut(s)	337, 649, 754, 988, 997
Hpy166II	GTNNAC	7 cut(s)	94, 202, 406, 514, 916, 1084, 1225
Hpy188I	TCNGA	5 cut(s)	123, 264, 792, 1371, 1532
Hpy188III	TCNNGA	7 cut(s)	700, 968, 1069, 1100, 1241, 1330, 1393
Hpy8I	GTNNAC	7 cut(s)	94, 202, 406, 514, 916, 1084, 1225
Hpy99I	CGWCG	4 cut(s)	740, 770, 803, 1354
HpyAV	CCTTC	4 cut(s)	350, 454, 460, 521
HpyCH4III	ACNGT	6 cut(s)	106, 139, 403, 724, 1354, 1589
HpyCH4IV	ACGT	7 cut(s)	204, 768, 801, 1112, 1431, 1507, 1599
HpyCH4V	TGCA	5 cut(s)	68, 176, 377, 1408, 1585
HpyF10VI	GCNNNNNNNGC	9 cut(s)	11, 44, 65, 173, 309, 737, 955, 1385, 1615
HpyF3I	CTNAG	5 cut(s)	10, 52, 263, 629, 1489
HpySE526I	ACGT	7 cut(s)	204, 768, 801, 1112, 1431, 1507, 1599
Hsp92I	GRCGYC	2 cut(s)	738, 1080
Hsp92II	CATG	9 cut(s)	248, 273, 377, 844, 1066, 1153, 1192, 1585, 1614
HspAI	GCGC	4 cut(s)	396, 413, 864, 924
KflI	GGGWCCC	1 cut(s)	1033
Ksp22I	TGATCA	1 cut(s)	1545
Kzo9I	GATC	4 cut(s)	440, 592, 830, 1545
LmnI	GCTCC	4 cut(s)	396, 410, 553, 1176
LweI	GCATC	2 cut(s)	915, 1417
MabI	ACCWGGT	1 cut(s)	784
MaeI	CTAG	4 cut(s)	23, 35, 861, 867
MaeII	ACGT	7 cut(s)	204, 768, 801, 1112, 1431, 1507, 1599
MaeIII	GTNAC	5 cut(s)	292, 775, 869, 1069, 1508
MalI	GATC	4 cut(s)	442, 594, 832, 1547
MboI	GATC	4 cut(s)	440, 592, 830, 1545
MboII	GAAGA	2 cut(s)	536, 688
MfeI	CAATTG	3 cut(s)	69, 1074, 1515
MflI	RGATCY	1 cut(s)	830
MhlI	GDGCHC	4 cut(s)	34, 1026, 1062, 1173
MlsI	TGGCCA	1 cut(s)	1388
MluNI	TGGCCA	1 cut(s)	1388
MlyI	GAGTC	3 cut(s)	274, 672, 1169
MmeI	TCCRAC	1 cut(s)	1510
Mox20I	TGGCCA	1 cut(s)	1388
Mph1103I	ATGCAT	1 cut(s)	1410
MscI	TGGCCA	1 cut(s)	1388
MseI	TTAA	6 cut(s)	87, 209, 339, 1467, 1485, 1494
MslI	CAYNNNNRTG	3 cut(s)	243, 767, 1067
Msp20I	TGGCCA	1 cut(s)	1388
MspI	CCGG	5 cut(s)	315, 348, 435, 588, 780
MspR9I	CCNGG	5 cut(s)	159, 315, 588, 786, 1569
MunI	CAATTG	3 cut(s)	69, 1074, 1515
Mva1269I	GAATGC	1 cut(s)	79
MvaI	CCWGG	3 cut(s)	159, 786, 1569
MvnI	CGCG	1 cut(s)	396
MwoI	GCNNNNNNNGC	9 cut(s)	11, 44, 65, 173, 309, 737, 955, 1385, 1615
NciI	CCSGG	2 cut(s)	315, 588
NcoI	CCATGG	2 cut(s)	269, 1610
NdeII	GATC	4 cut(s)	440, 592, 830, 1545
NheI	GCTAGC	2 cut(s)	22, 860
NlaIII	CATG	9 cut(s)	248, 273, 377, 844, 1066, 1153, 1192, 1585, 1614
NlaIV	GGNNCC	6 cut(s)	361, 392, 1024, 1025, 1034, 1035
NmuCI	GTSAC	2 cut(s)	869, 1069
NsiI	ATGCAT	1 cut(s)	1410
NspI	RCATGY	3 cut(s)	377, 1066, 1585
OliI	CACNNNNGTG	1 cut(s)	767
PaeI	GCATGC	1 cut(s)	377
PceI	AGGCCT	1 cut(s)	531
PciI	ACATGT	1 cut(s)	1062
PcsI	WCGNNNNNNNCGW	1 cut(s)	1164
PctI	GAATGC	1 cut(s)	79
PfeI	GAWTC	3 cut(s)	124, 249, 1658
PflFI	GACNNNGTC	2 cut(s)	117, 786
PflMI	CCANNNNNTGG	1 cut(s)	1435
PfoI	TCCNGGA	1 cut(s)	157
PkrI	GCNGC	1 cut(s)	847
PleI	GAGTC	3 cut(s)	273, 672, 1168
PmaCI	CACGTG	2 cut(s)	1113, 1432
PmlI	CACGTG	2 cut(s)	1113, 1432
PpsI	GAGTC	3 cut(s)	273, 672, 1168
Ppu21I	YACGTR	3 cut(s)	1113, 1432, 1508
PpuMI	RGGWCCY	1 cut(s)	1033
PscI	ACATGT	1 cut(s)	1062
PshAI	GACNNNNGTC	1 cut(s)	725
PshBI	ATTAAT	1 cut(s)	1467
Psp5II	RGGWCCY	1 cut(s)	1033
Psp6I	CCWGG	3 cut(s)	157, 784, 1567
PspCI	CACGTG	2 cut(s)	1113, 1432
PspEI	GGTNACC	1 cut(s)	775
PspFI	CCCAGC	2 cut(s)	687, 1618
PspGI	CCWGG	3 cut(s)	157, 784, 1567
PspN4I	GGNNCC	6 cut(s)	361, 392, 1024, 1025, 1034, 1035
PspOMI	GGGCCC	1 cut(s)	1022
PspPI	GGNCC	9 cut(s)	161, 281, 782, 982, 1022, 1023, 1033, 1120, 1646
PspPPI	RGGWCCY	1 cut(s)	1033
PstNI	CAGNNNCTG	1 cut(s)	262
PsuI	RGATCY	1 cut(s)	830
PsyI	GACNNNGTC	2 cut(s)	117, 786
RsaI	GTAC	3 cut(s)	497, 1041, 1580
RsaNI	GTAC	3 cut(s)	496, 1040, 1579
RseI	CAYNNNNRTG	3 cut(s)	243, 767, 1067
SalI	GTCGAC	1 cut(s)	512
SaqAI	TTAA	6 cut(s)	87, 209, 339, 1467, 1485, 1494
SatI	GCNGC	1 cut(s)	846
Sau3AI	GATC	4 cut(s)	440, 592, 830, 1545
Sau96I	GGNCC	9 cut(s)	161, 281, 782, 982, 1022, 1023, 1033, 1120, 1646
SchI	GAGTC	3 cut(s)	274, 672, 1169
ScrFI	CCNGG	5 cut(s)	159, 315, 588, 786, 1569
SduI	GDGCHC	4 cut(s)	34, 1026, 1062, 1173
SexAI	ACCWGGT	1 cut(s)	784
SfaNI	GCATC	2 cut(s)	915, 1417
SfcI	CTRYAG	1 cut(s)	138
SinI	GGWCC	5 cut(s)	161, 281, 782, 1033, 1646
SmiMI	CAYNNNNRTG	3 cut(s)	243, 767, 1067
SmlI	CTYRAG	2 cut(s)	455, 1046
SmoI	CTYRAG	2 cut(s)	455, 1046
SnaBI	TACGTA	1 cut(s)	1508
SphI	GCATGC	1 cut(s)	377
SseBI	AGGCCT	1 cut(s)	531
SsiI	CCGC	6 cut(s)	275, 394, 462, 846, 1143, 1499
SspMI	CTAG	4 cut(s)	23, 35, 861, 867
StuI	AGGCCT	1 cut(s)	531
StyD4I	CCNGG	5 cut(s)	157, 313, 586, 784, 1567
StyI	CCWWGG	3 cut(s)	269, 1323, 1610
TaaI	ACNGT	6 cut(s)	106, 139, 403, 724, 1354, 1589
TaiI	ACGT	7 cut(s)	207, 771, 804, 1115, 1434, 1510, 1602
TaqI	TCGA	8 cut(s)	439, 513, 735, 879, 893, 1290, 1349, 1392
TauI	GCSGC	1 cut(s)	848
TfiI	GAWTC	3 cut(s)	124, 249, 1658
Tru1I	TTAA	6 cut(s)	87, 209, 339, 1467, 1485, 1494
Tru9I	TTAA	6 cut(s)	87, 209, 339, 1467, 1485, 1494
TscAI	CASTG	3 cut(s)	245, 1341, 1592
TseFI	GTSAC	2 cut(s)	869, 1069
Tsp45I	GTSAC	2 cut(s)	869, 1069
TspDTI	ATGAA	3 cut(s)	921, 1166, 1592
TspGWI	ACGGA	2 cut(s)	423, 1286
TspRI	CASTG	3 cut(s)	245, 1341, 1592
Tth111I	GACNNNGTC	2 cut(s)	117, 786
Van91I	CCANNNNNTGG	1 cut(s)	1435
VpaK11BI	GGWCC	5 cut(s)	161, 281, 782, 1033, 1646
VspI	ATTAAT	1 cut(s)	1467
XapI	RAATTY	4 cut(s)	335, 812, 1259, 1481
XceI	RCATGY	3 cut(s)	377, 1066, 1585
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1533
XmiI	GTMKAC	2 cut(s)	513, 915
XspI	CTAG	4 cut(s)	23, 35, 861, 867
Zsp2I	ATGCAT	1 cut(s)	1410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.