Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0003803

Physical Location & Seq

Genomic Coordinates Forward (+)

16001331 .. 16002067

Gene Structure 737 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g12960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGTTCGTGACAATCGGCGTCAACTTGGAGATGTGTCCAGAAAATGCCACATGTCAGGGTCTATTCAATAACCGACTATCTGCAAGCATGAACAACGAGTCATTTGTGCTCCCAAGTAATACATCCATGTTGGAAGCACAGTTTCACAATGTGAGCGGGGTTTACACCAGAGACTTTCCTGACAAGCCTCCAGTCAAATTTGACTACACGGACACAAACATCAGCCTCGACCTATCACTGATATACGCGCCAAAATCGACCAAGGTCAAGACGCTGAAATTCAATTCAACAGTGGAGATGGTGCTTCAGAACACAGCGTTTTTGGCCATCGAGAACCACCCGATGCATCTCCACGGCTTCAATTTCCACGTGTTGGCACAAGGGTTTGGAAATTACGACCCAATTAATGACCCCAAAAAGTTTAACTTCGTTAATCCACAAATACGTAACACAATTGGTGTGCCAGTCGGAGGATGGGCTGTGATTAGGTTTCAAGCAAATAATCCTGGTATATGGTACATGCACTGTCATTTGGATGTGCATCTGCCATGGGGGCTGGGAATGGCCTTTGAGGTTGAAAATGGACCGACGCTAGAGTCTACTTTGCCTCCACCACCACTTGATTTGCCCAAATGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0007275 GO:0008150 GO:0008152 GO:0009791 GO:0010035 GO:0010038 GO:0010228 GO:0016491 GO:0016722 GO:0022414 GO:0032501 GO:0032502 GO:0042221 GO:0046688 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0055114 GO:0061458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

213

Amino Acids

23.74

Weight (kDa)

5.85

Isoelectric Point (pI)

34.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu-oxidase_2	PF07731	58 - 194	2.9e-42	Multicopper oxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003803)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09220 AT3G09220
fragaria_vesca	FvH4_6g12410 FvH4_6g12430 FvH4_6g12430
malus_domestica	MD04G1142300.v1.1 MD04G1142400.v1.1 MD04G1142600.v1.1 MD04G1142900.v1.1 MD12G1157000.v1.1 MD12G1157100.v1.1 MD12G1157900.v1.1 MD16G1147100.v1.1
prunus_persica	Prupe.6G267700_v2.0.a1
pyrus_communis	pycom04g12930 pycom04g12940 pycom04g12950 pycom04g12960 pycom04g12970 pycom04g12980 pycom12g14940
rosa_chinensis	RchiOBHm_Chr3g0464241
rosa_laevigata	RLG00000024714 RLG00000036611
rosa_multiflora	Rmu_sc0005961.1_g000011 Rmu_sc0007811.1_g000009
rosa_roxburghii	Rroxscaffold_1G00005620 Rroxscaffold_6G00415910
rosa_rugosa	Rorug03G0071000
rosa_samantha	Rh3DG134200 Rh5AG501600 Rh5CG547100
rosa_wichuraiana	Rw3G010860 Rw5G046570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	595
AccB7I	CCANNNNNTGG	1 cut(s)	373
AccBSI	CCGCTC	1 cut(s)	156
AccI	GTMKAC	1 cut(s)	599
AccII	CGCG	1 cut(s)	248
AciI	CCGC	1 cut(s)	156
AcoI	YGGCCR	1 cut(s)	324
AcsI	RAATTY	2 cut(s)	197, 278
AcuI	CTGAAG	1 cut(s)	290
AcvI	CACGTG	1 cut(s)	370
AcyI	GRCGYC	1 cut(s)	18
AdeI	CACNNNGTG	1 cut(s)	151
AfaI	GTAC	1 cut(s)	518
AfiI	CCNNNNNNNGG	2 cut(s)	373, 470
AflIII	ACRYGT	2 cut(s)	50, 369
AgsI	TTSAA	6 cut(s)	67, 283, 288, 361, 494, 578
AjnI	CCWGG	1 cut(s)	505
Alw21I	GWGCWC	1 cut(s)	111
Alw26I	GTCTC	1 cut(s)	165
AoxI	GGCC	2 cut(s)	324, 564
ApoI	RAATTY	2 cut(s)	197, 278
AseI	ATTAAT	1 cut(s)	405
AspLEI	GCGC	1 cut(s)	250
AspS9I	GGNCC	1 cut(s)	584
AvaII	GGWCC	1 cut(s)	584
BalI	TGGCCA	1 cut(s)	326
BbrPI	CACGTG	1 cut(s)	370
Bbv12I	GWGCWC	1 cut(s)	111
BccI	CCATC	3 cut(s)	292, 335, 468
BceAI	ACGGC	1 cut(s)	370
BciT130I	CCWGG	1 cut(s)	507
BcoDI	GTCTC	1 cut(s)	165
BfaI	CTAG	1 cut(s)	593
BglI	GCCNNNNNGGC	1 cut(s)	553
Bme1390I	CCNGG	1 cut(s)	507
Bme18I	GGWCC	1 cut(s)	584
BmgT120I	GGNCC	1 cut(s)	584
BmrFI	CCNGG	1 cut(s)	507
BmsI	GCATC	3 cut(s)	333, 355, 550
BoxI	GACNNNNGTC	1 cut(s)	263
BpmI	CTGGAG	1 cut(s)	174
BsaAI	YACGTR	2 cut(s)	370, 446
BsaBI	GATNNNNATC	1 cut(s)	540
BsaHI	GRCGYC	1 cut(s)	18
BsaJI	CCNNGG	3 cut(s)	261, 352, 548
BsaXI	ACNNNNNCTCC	2 cut(s)	592, 622
Bsc4I	CCNNNNNNNGG	2 cut(s)	373, 470
Bse1I	ACTGG	2 cut(s)	191, 464
Bse8I	GATNNNNATC	1 cut(s)	540
BseBI	CCWGG	1 cut(s)	507
BseDI	CCNNGG	3 cut(s)	261, 352, 548
BseGI	GGATG	3 cut(s)	122, 479, 541
BseJI	GATNNNNATC	1 cut(s)	540
BseLI	CCNNNNNNNGG	2 cut(s)	373, 470
BseNI	ACTGG	2 cut(s)	191, 464
BseYI	CCCAGC	1 cut(s)	556
Bsh1236I	CGCG	1 cut(s)	248
BshFI	GGCC	2 cut(s)	326, 566
BsiHKAI	GWGCWC	1 cut(s)	111
BslI	CCNNNNNNNGG	2 cut(s)	373, 470
BsmAI	GTCTC	1 cut(s)	165
BsnI	GGCC	2 cut(s)	326, 566
Bsp1286I	GDGCHC	1 cut(s)	111
Bsp19I	CCATGG	1 cut(s)	548
BspACI	CCGC	1 cut(s)	156
BspANI	GGCC	2 cut(s)	326, 566
BspFNI	CGCG	1 cut(s)	248
BsrBI	CCGCTC	1 cut(s)	156
BsrI	ACTGG	2 cut(s)	191, 464
BssECI	CCNNGG	3 cut(s)	261, 352, 548
BssNI	GRCGYC	1 cut(s)	18
BssT1I	CCWWGG	2 cut(s)	261, 548
Bst2UI	CCWGG	1 cut(s)	507
Bst4CI	ACNGT	3 cut(s)	141, 292, 527
BstACI	GRCGYC	1 cut(s)	18
BstBAI	YACGTR	2 cut(s)	370, 446
BstC8I	GCNNGC	1 cut(s)	85
BstDSI	CCRYGG	2 cut(s)	352, 548
BstF5I	GGATG	3 cut(s)	122, 479, 541
BstFNI	CGCG	1 cut(s)	248
BstHHI	GCGC	1 cut(s)	250
BstMAI	GTCTC	1 cut(s)	165
BstMWI	GCNNNNNNNGC	2 cut(s)	323, 553
BstNI	CCWGG	1 cut(s)	507
BstNSI	RCATGY	2 cut(s)	54, 523
BstPAI	GACNNNNGTC	1 cut(s)	263
BstSCI	CCNGG	1 cut(s)	505
BstSNI	TACGTA	1 cut(s)	446
BstUI	CGCG	1 cut(s)	248
BsuRI	GGCC	2 cut(s)	326, 566
BtgI	CCRYGG	2 cut(s)	352, 548
BtsCI	GGATG	3 cut(s)	122, 479, 541
BtsIMutI	CAGTG	3 cut(s)	236, 297, 523
Cac8I	GCNNGC	1 cut(s)	85
CfoI	GCGC	1 cut(s)	250
Cfr13I	GGNCC	1 cut(s)	584
CseI	GACGC	3 cut(s)	7, 280, 598
Csp6I	GTAC	1 cut(s)	517
CspCI	CAANNNNNGTGG	1 cut(s)	606
CviAII	CATG	5 cut(s)	51, 88, 127, 520, 549
CviJI	RGCY	7 cut(s)	187, 225, 326, 357, 479, 556, 566
CviKI_1	RGCY	7 cut(s)	187, 225, 326, 357, 479, 556, 566
CviQI	GTAC	1 cut(s)	517
DraIII	CACNNNGTG	1 cut(s)	151
DrdI	GACNNNNNNGTC	1 cut(s)	595
DseDI	GACNNNNNNGTC	1 cut(s)	595
EaeI	YGGCCR	1 cut(s)	324
Eco105I	TACGTA	1 cut(s)	446
Eco130I	CCWWGG	2 cut(s)	261, 548
Eco47I	GGWCC	1 cut(s)	584
Eco57I	CTGAAG	1 cut(s)	290
Eco72I	CACGTG	1 cut(s)	370
EcoRII	CCWGG	1 cut(s)	505
EcoT14I	CCWWGG	2 cut(s)	261, 548
EcoT22I	ATGCAT	1 cut(s)	348
ErhI	CCWWGG	2 cut(s)	261, 548
FaeI	CATG	5 cut(s)	54, 91, 130, 523, 552
FaiI	YATR	8 cut(s)	52, 89, 128, 244, 512, 514, 521, 550
FalI	AAGNNNNNCTT	2 cut(s)	410, 442
FatI	CATG	5 cut(s)	50, 87, 126, 519, 548
FauI	CCCGC	1 cut(s)	149
FblI	GTMKAC	1 cut(s)	599
FokI	GGATG	3 cut(s)	109, 486, 548
FspBI	CTAG	1 cut(s)	593
GlaI	GCGC	1 cut(s)	249
GsaI	CCCAGC	1 cut(s)	560
GsuI	CTGGAG	1 cut(s)	174
HaeIII	GGCC	2 cut(s)	326, 566
HgaI	GACGC	3 cut(s)	7, 280, 598
HhaI	GCGC	1 cut(s)	250
Hin1I	GRCGYC	1 cut(s)	18
Hin1II	CATG	5 cut(s)	54, 91, 130, 523, 552
Hin6I	GCGC	1 cut(s)	248
HinP1I	GCGC	1 cut(s)	248
HincII	GTYRAC	1 cut(s)	22
HindII	GTYRAC	1 cut(s)	22
HinfI	GANTC	2 cut(s)	98, 596
Hpy166II	GTNNAC	3 cut(s)	22, 163, 600
Hpy188I	TCNGA	2 cut(s)	309, 470
Hpy188III	TCNNGA	5 cut(s)	7, 38, 179, 268, 331
Hpy8I	GTNNAC	3 cut(s)	22, 163, 600
Hpy99I	CGWCG	1 cut(s)	592
HpyCH4III	ACNGT	3 cut(s)	141, 292, 527
HpyCH4IV	ACGT	2 cut(s)	369, 445
HpyCH4V	TGCA	4 cut(s)	83, 346, 523, 541
HpyF10VI	GCNNNNNNNGC	2 cut(s)	323, 553
HpySE526I	ACGT	2 cut(s)	369, 445
Hsp92I	GRCGYC	1 cut(s)	18
Hsp92II	CATG	5 cut(s)	54, 91, 130, 523, 552
HspAI	GCGC	1 cut(s)	248
LmnI	GCTCC	1 cut(s)	114
LpnPI	CCDG	9 cut(s)	41, 51, 181, 192, 204, 477, 492, 519, 542
LweI	GCATC	3 cut(s)	333, 355, 550
MaeI	CTAG	1 cut(s)	593
MaeII	ACGT	2 cut(s)	369, 445
MaeIII	GTNAC	2 cut(s)	7, 446
MbiI	CCGCTC	1 cut(s)	156
MfeI	CAATTG	1 cut(s)	453
MhlI	GDGCHC	1 cut(s)	111
MlsI	TGGCCA	1 cut(s)	326
MluCI	AATT	7 cut(s)	197, 278, 283, 361, 391, 402, 453
MluNI	TGGCCA	1 cut(s)	326
MlyI	GAGTC	2 cut(s)	107, 605
MmeI	TCCRAC	2 cut(s)	111, 448
MnlI	CCTC	5 cut(s)	198, 236, 464, 565, 618
Mox20I	TGGCCA	1 cut(s)	326
Mph1103I	ATGCAT	1 cut(s)	348
MscI	TGGCCA	1 cut(s)	326
MseI	TTAA	3 cut(s)	405, 423, 432
MslI	CAYNNNNRTG	1 cut(s)	534
Msp20I	TGGCCA	1 cut(s)	326
MspR9I	CCNGG	1 cut(s)	507
MunI	CAATTG	1 cut(s)	453
MvaI	CCWGG	1 cut(s)	507
MvnI	CGCG	1 cut(s)	248
MwoI	GCNNNNNNNGC	2 cut(s)	323, 553
NcoI	CCATGG	1 cut(s)	548
NlaIII	CATG	5 cut(s)	54, 91, 130, 523, 552
NmuCI	GTSAC	1 cut(s)	7
NsiI	ATGCAT	1 cut(s)	348
NspI	RCATGY	2 cut(s)	54, 523
PciI	ACATGT	1 cut(s)	50
PflMI	CCANNNNNTGG	1 cut(s)	373
PleI	GAGTC	2 cut(s)	106, 604
PmaCI	CACGTG	1 cut(s)	370
PmlI	CACGTG	1 cut(s)	370
PpsI	GAGTC	2 cut(s)	106, 604
Ppu21I	YACGTR	2 cut(s)	370, 446
PscI	ACATGT	1 cut(s)	50
PshAI	GACNNNNGTC	1 cut(s)	263
PshBI	ATTAAT	1 cut(s)	405
Psp6I	CCWGG	1 cut(s)	505
PspCI	CACGTG	1 cut(s)	370
PspFI	CCCAGC	1 cut(s)	556
PspGI	CCWGG	1 cut(s)	505
PspPI	GGNCC	1 cut(s)	584
RsaI	GTAC	1 cut(s)	518
RsaNI	GTAC	1 cut(s)	517
RseI	CAYNNNNRTG	1 cut(s)	534
SaqAI	TTAA	3 cut(s)	405, 423, 432
Sau96I	GGNCC	1 cut(s)	584
SchI	GAGTC	2 cut(s)	107, 605
ScrFI	CCNGG	1 cut(s)	507
SduI	GDGCHC	1 cut(s)	111
SetI	ASST	6 cut(s)	234, 267, 372, 448, 491, 576
SfaNI	GCATC	3 cut(s)	333, 355, 550
SinI	GGWCC	1 cut(s)	584
SmiMI	CAYNNNNRTG	1 cut(s)	534
SnaBI	TACGTA	1 cut(s)	446
Sse9I	AATT	7 cut(s)	197, 278, 283, 361, 391, 402, 453
SsiI	CCGC	1 cut(s)	156
SspMI	CTAG	1 cut(s)	593
StyD4I	CCNGG	1 cut(s)	505
StyI	CCWWGG	2 cut(s)	261, 548
TaaI	ACNGT	3 cut(s)	141, 292, 527
TaiI	ACGT	2 cut(s)	372, 448
TaqI	TCGA	3 cut(s)	228, 257, 330
TaqII	GACCGA	1 cut(s)	601
TasI	AATT	7 cut(s)	197, 278, 283, 361, 391, 402, 453
Tru1I	TTAA	3 cut(s)	405, 423, 432
Tru9I	TTAA	3 cut(s)	405, 423, 432
TscAI	CASTG	3 cut(s)	243, 297, 530
TseFI	GTSAC	1 cut(s)	7
Tsp45I	GTSAC	1 cut(s)	7
TspDTI	ATGAA	1 cut(s)	104
TspGWI	ACGGA	1 cut(s)	224
TspRI	CASTG	3 cut(s)	243, 297, 530
Van91I	CCANNNNNTGG	1 cut(s)	373
VpaK11BI	GGWCC	1 cut(s)	584
VspI	ATTAAT	1 cut(s)	405
XapI	RAATTY	2 cut(s)	197, 278
XceI	RCATGY	2 cut(s)	54, 523
XcmI	CCANNNNNNNNNTGG	1 cut(s)	471
XmiI	GTMKAC	1 cut(s)	599
XspI	CTAG	1 cut(s)	593
Zsp2I	ATGCAT	1 cut(s)	348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.