Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0003803

Physical Location & Seq

Genomic Coordinates Forward (+)

15946911 .. 15947996

Gene Structure 1086 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g12940.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGACAGTTGTTGCCATTGACGCCTCGTACACGACTCCTTATGTCACAGACGTGGTGGTTATTGCACCCGGTCAGACCACCGATGTTCTCGTCAAATTCAATCAACTTAACGGATCTTATTACATGGCCGCCACTCCTTACGCTAGCGCTGATGCTACTGCCGTTGGCTTTGATAACTCGACAACTAGAGGCATCATCGTCTACAAGGGCTACACATCATCAACCCCCATTATGCCCCCTATGCCCAACCCTAGCGACACGCCGTTGGCCAACAAGTTCTTCACCAATCTCACCGGCTTCCCTGGTGGGCCCCACTGGGTCCCAGTCCCACGTGAGGTGGACGAGCACATGTTCGTGACAGTTGGCGTTAACTTAGCGATGTGTCCCGAAAATGCCACGTGTCAAGCCATATTTAATAGCCGATTATCTGCGAGCATGAATAACGAGTCATTCGTGACCCCGACCAATATGTCCATGCTGGAAGCACATTTTAACAATGTGAGTGGGGTCTACACCAGAGATTTTCCCAACGAGCCTCCGGTCAAGTTTGACTACACGGACACGAACCTTAGCCTCGACCTATCCCTGATATTCGCGCCAAAATCAACCAAGGTCAAGACGCTAAAGTTCAATTCGACAGTACAATTAGTGTATCAGAACACAGCGTTTTTGGCCATCGAGAACCACCCGATGCATATCCATGGCTTCAATTTCCACGTATTGGCACAAGGATTTGGAAATTACGATCCGATCAATGACCCCAAAAAATTTAACTTCGTTAATCCGCAAGTACGTAACACAATTGGTGTGCCGGTCGGAGGATGGGCTGTGATCAGGTTTCAAGCAAATAATCCTGGTATCTGGTTCGTGCATTGTCACTTGGACGTTCATCTGCCTTGGGGGCTGGCTATGGCTTTTGAGGTTGAAAATGGAGGGACGCCAGAATCTACTTTGCCTCCACCACCACCTGATCTGCCCAAATGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0007275 GO:0008150 GO:0008152 GO:0009791 GO:0010035 GO:0010038 GO:0010228 GO:0016491 GO:0016722 GO:0022414 GO:0032501 GO:0032502 GO:0042221 GO:0046688 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0055114 GO:0061458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

329

Amino Acids

35.99

Weight (kDa)

5.61

Isoelectric Point (pI)

27.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003803)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09220 AT3G09220
fragaria_vesca	FvH4_6g12410 FvH4_6g12430 FvH4_6g12430
malus_domestica	MD04G1142300.v1.1 MD04G1142400.v1.1 MD04G1142600.v1.1 MD04G1142900.v1.1 MD12G1157000.v1.1 MD12G1157100.v1.1 MD12G1157900.v1.1 MD16G1147100.v1.1
prunus_persica	Prupe.6G267700_v2.0.a1
pyrus_communis	pycom04g12930 pycom04g12940 pycom04g12950 pycom04g12960 pycom04g12970 pycom04g12980 pycom12g14940
rosa_chinensis	RchiOBHm_Chr3g0464241
rosa_laevigata	RLG00000024714 RLG00000036611
rosa_multiflora	Rmu_sc0005961.1_g000011 Rmu_sc0007811.1_g000009
rosa_roxburghii	Rroxscaffold_1G00005620 Rroxscaffold_6G00415910
rosa_rugosa	Rorug03G0071000
rosa_samantha	Rh3DG134200 Rh5AG501600 Rh5CG547100
rosa_wichuraiana	Rw3G010860 Rw5G046570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	469
AccB7I	CCANNNNNTGG	1 cut(s)	721
AccI	GTMKAC	2 cut(s)	201, 510
AccII	CGCG	1 cut(s)	596
AciI	CCGC	2 cut(s)	129, 785
AclWI	GGATC	2 cut(s)	121, 740
AcoI	YGGCCR	3 cut(s)	126, 267, 672
AcsI	RAATTY	2 cut(s)	95, 767
AcvI	CACGTG	2 cut(s)	332, 399
AcyI	GRCGYC	2 cut(s)	21, 938
AfaI	GTAC	3 cut(s)	29, 642, 792
AfeI	AGCGCT	1 cut(s)	148
AfiI	CCNNNNNNNGG	3 cut(s)	334, 721, 818
AflIII	ACRYGT	2 cut(s)	348, 398
AgsI	TTSAA	5 cut(s)	100, 631, 709, 842, 926
AjiI	CACGTC	1 cut(s)	52
AjnI	CCWGG	2 cut(s)	301, 853
AjuI	GAANNNNNNNTTGG	2 cut(s)	263, 295
AleI	CACNNNNGTG	1 cut(s)	50
Alw21I	GWGCWC	1 cut(s)	348
AlwI	GGATC	2 cut(s)	121, 740
Aor51HI	AGCGCT	1 cut(s)	148
AoxI	GGCC	4 cut(s)	126, 267, 308, 672
ApaI	GGGCCC	1 cut(s)	312
ApoI	RAATTY	2 cut(s)	95, 767
AspLEI	GCGC	2 cut(s)	149, 598
AspS9I	GGNCC	3 cut(s)	308, 309, 319
AsuC2I	CCSGG	1 cut(s)	69
AsuHPI	GGTGA	2 cut(s)	274, 283
AsuNHI	GCTAGC	1 cut(s)	143
AvaII	GGWCC	1 cut(s)	319
BaeGI	GKGCMC	1 cut(s)	312
BalI	TGGCCA	2 cut(s)	269, 674
BanII	GRGCYC	1 cut(s)	312
BbrPI	CACGTG	2 cut(s)	332, 399
Bbv12I	GWGCWC	1 cut(s)	348
BccI	CCATC	2 cut(s)	683, 816
BceAI	ACGGC	2 cut(s)	146, 247
BciT130I	CCWGG	2 cut(s)	303, 855
BclI	TGATCA	1 cut(s)	831
BcnI	CCSGG	1 cut(s)	69
BfaI	CTAG	3 cut(s)	144, 186, 252
BfoI	RGCGCY	1 cut(s)	150
BglI	GCCNNNNNGGC	1 cut(s)	901
BisI	GCNGC	1 cut(s)	129
BlsI	GCNGC	1 cut(s)	130
Bme1390I	CCNGG	3 cut(s)	69, 303, 855
Bme18I	GGWCC	1 cut(s)	319
BmgBI	CACGTC	1 cut(s)	52
BmgT120I	GGNCC	3 cut(s)	308, 309, 319
BmiI	GGNNCC	4 cut(s)	310, 311, 320, 321
BmrFI	CCNGG	3 cut(s)	69, 303, 855
BmrI	ACTGGG	2 cut(s)	317, 325
BmsI	GCATC	3 cut(s)	142, 201, 681
BmtI	GCTAGC	1 cut(s)	147
BmuI	ACTGGG	2 cut(s)	317, 325
Bpu10I	CCTNAGC	1 cut(s)	569
BpuMI	CCSGG	1 cut(s)	69
BsaAI	YACGTR	4 cut(s)	332, 399, 718, 794
BsaBI	GATNNNNATC	1 cut(s)	695
BsaHI	GRCGYC	2 cut(s)	21, 938
BsaJI	CCNNGG	4 cut(s)	301, 609, 700, 896
BsaWI	WCCGGW	1 cut(s)	538
BsaXI	ACNNNNNCTCC	2 cut(s)	940, 970
Bsc4I	CCNNNNNNNGG	3 cut(s)	334, 721, 818
Bse118I	RCCGGY	2 cut(s)	293, 811
Bse1I	ACTGG	2 cut(s)	320, 323
Bse8I	GATNNNNATC	1 cut(s)	695
BseBI	CCWGG	2 cut(s)	303, 855
BseDI	CCNNGG	4 cut(s)	301, 609, 700, 896
BseGI	GGATG	1 cut(s)	827
BseJI	GATNNNNATC	1 cut(s)	695
BseLI	CCNNNNNNNGG	3 cut(s)	334, 721, 818
BseNI	ACTGG	2 cut(s)	320, 323
BseSI	GKGCMC	1 cut(s)	312
Bsh1236I	CGCG	1 cut(s)	596
Bsh1285I	CGRYCG	1 cut(s)	816
BshFI	GGCC	4 cut(s)	128, 269, 310, 674
BsiEI	CGRYCG	1 cut(s)	816
BsiHKAI	GWGCWC	1 cut(s)	348
BsiSI	CCGG	4 cut(s)	69, 294, 539, 812
BslFI	GGGAC	4 cut(s)	305, 311, 369, 949
BslI	CCNNNNNNNGG	3 cut(s)	334, 721, 818
BsmFI	GGGAC	4 cut(s)	305, 311, 369, 949
BsnI	GGCC	4 cut(s)	128, 269, 310, 674
Bsp120I	GGGCCC	1 cut(s)	308
Bsp1286I	GDGCHC	2 cut(s)	312, 348
Bsp143I	GATC	5 cut(s)	113, 745, 750, 831, 970
Bsp19I	CCATGG	1 cut(s)	700
BspACI	CCGC	2 cut(s)	129, 785
BspANI	GGCC	4 cut(s)	128, 269, 310, 674
BspFNI	CGCG	1 cut(s)	596
BspLI	GGNNCC	4 cut(s)	310, 311, 320, 321
BspOI	GCTAGC	1 cut(s)	147
BspPI	GGATC	2 cut(s)	121, 740
BsrFI	RCCGGY	2 cut(s)	293, 811
BsrI	ACTGG	2 cut(s)	320, 323
BssAI	RCCGGY	2 cut(s)	293, 811
BssECI	CCNNGG	4 cut(s)	301, 609, 700, 896
BssMI	GATC	5 cut(s)	113, 745, 750, 831, 970
BssNI	GRCGYC	2 cut(s)	21, 938
BssT1I	CCWWGG	3 cut(s)	609, 700, 896
Bst2UI	CCWGG	2 cut(s)	303, 855
Bst4CI	ACNGT	3 cut(s)	7, 361, 640
BstACI	GRCGYC	2 cut(s)	21, 938
BstBAI	YACGTR	4 cut(s)	332, 399, 718, 794
BstC8I	GCNNGC	3 cut(s)	145, 433, 906
BstDEI	CTNAG	2 cut(s)	373, 569
BstDSI	CCRYGG	1 cut(s)	700
BstF5I	GGATG	1 cut(s)	827
BstFNI	CGCG	1 cut(s)	596
BstH2I	RGCGCY	1 cut(s)	150
BstHHI	GCGC	2 cut(s)	149, 598
BstKTI	GATC	5 cut(s)	116, 748, 753, 834, 973
BstMBI	GATC	5 cut(s)	113, 745, 750, 831, 970
BstMCI	CGRYCG	1 cut(s)	816
BstMWI	GCNNNNNNNGC	4 cut(s)	20, 241, 671, 901
BstNI	CCWGG	2 cut(s)	303, 855
BstNSI	RCATGY	1 cut(s)	352
BstSCI	CCNGG	3 cut(s)	67, 301, 853
BstSLI	GKGCMC	1 cut(s)	312
BstSNI	TACGTA	1 cut(s)	794
BstUI	CGCG	1 cut(s)	596
BstX2I	RGATCY	1 cut(s)	113
BstYI	RGATCY	1 cut(s)	113
BsuRI	GGCC	4 cut(s)	128, 269, 310, 674
BtgI	CCRYGG	1 cut(s)	700
BtgZI	GCGATG	1 cut(s)	392
BtrI	CACGTC	1 cut(s)	52
BtsCI	GGATG	1 cut(s)	827
BtsIMutI	CAGTG	1 cut(s)	313
Cac8I	GCNNGC	3 cut(s)	145, 433, 906
CfoI	GCGC	2 cut(s)	149, 598
Cfr10I	RCCGGY	2 cut(s)	293, 811
Cfr13I	GGNCC	3 cut(s)	308, 309, 319
CseI	GACGC	3 cut(s)	29, 628, 946
Csp6I	GTAC	3 cut(s)	28, 641, 791
CspCI	CAANNNNNGTGG	2 cut(s)	484, 519
CviAII	CATG	5 cut(s)	124, 349, 436, 475, 701
CviQI	GTAC	3 cut(s)	28, 641, 791
DdeI	CTNAG	2 cut(s)	373, 569
DpnI	GATC	5 cut(s)	115, 747, 752, 833, 972
DpnII	GATC	5 cut(s)	113, 745, 750, 831, 970
DrdI	GACNNNNNNGTC	1 cut(s)	469
DseDI	GACNNNNNNGTC	1 cut(s)	469
EaeI	YGGCCR	3 cut(s)	126, 267, 672
Eco105I	TACGTA	1 cut(s)	794
Eco130I	CCWWGG	3 cut(s)	609, 700, 896
Eco24I	GRGCYC	1 cut(s)	312
Eco47I	GGWCC	1 cut(s)	319
Eco47III	AGCGCT	1 cut(s)	148
Eco72I	CACGTG	2 cut(s)	332, 399
EcoO109I	RGGNCCY	2 cut(s)	309, 319
EcoRII	CCWGG	2 cut(s)	301, 853
EcoT14I	CCWWGG	3 cut(s)	609, 700, 896
EcoT22I	ATGCAT	1 cut(s)	696
EcoT38I	GRGCYC	1 cut(s)	312
ErhI	CCWWGG	3 cut(s)	609, 700, 896
FaeI	CATG	5 cut(s)	127, 352, 439, 478, 704
FaqI	GGGAC	4 cut(s)	305, 311, 369, 949
FatI	CATG	5 cut(s)	123, 348, 435, 474, 700
FbaI	TGATCA	1 cut(s)	831
FblI	GTMKAC	2 cut(s)	201, 510
Fnu4HI	GCNGC	1 cut(s)	129
FokI	GGATG	1 cut(s)	834
FriOI	GRGCYC	1 cut(s)	312
Fsp4HI	GCNGC	1 cut(s)	129
FspBI	CTAG	3 cut(s)	144, 186, 252
GlaI	GCGC	2 cut(s)	148, 597
GluI	GCNGC	1 cut(s)	129
HaeII	RGCGCY	1 cut(s)	150
HaeIII	GGCC	4 cut(s)	128, 269, 310, 674
HapII	CCGG	4 cut(s)	69, 294, 539, 812
HgaI	GACGC	3 cut(s)	29, 628, 946
HhaI	GCGC	2 cut(s)	149, 598
Hin1I	GRCGYC	2 cut(s)	21, 938
Hin1II	CATG	5 cut(s)	127, 352, 439, 478, 704
Hin6I	GCGC	2 cut(s)	147, 596
HinP1I	GCGC	2 cut(s)	147, 596
HincII	GTYRAC	1 cut(s)	370
HindII	GTYRAC	1 cut(s)	370
HinfI	GANTC	3 cut(s)	34, 446, 944
HpaI	GTTAAC	1 cut(s)	370
HpaII	CCGG	4 cut(s)	69, 294, 539, 812
HphI	GGTGA	2 cut(s)	274, 283
Hpy166II	GTNNAC	5 cut(s)	30, 202, 340, 370, 511
Hpy188I	TCNGA	4 cut(s)	75, 657, 750, 818
Hpy188III	TCNNGA	5 cut(s)	355, 386, 454, 616, 679
Hpy8I	GTNNAC	5 cut(s)	30, 202, 340, 370, 511
HpyCH4III	ACNGT	3 cut(s)	7, 361, 640
HpyCH4IV	ACGT	6 cut(s)	51, 331, 398, 717, 793, 885
HpyCH4V	TGCA	3 cut(s)	65, 694, 871
HpyF10VI	GCNNNNNNNGC	4 cut(s)	20, 241, 671, 901
HpyF3I	CTNAG	2 cut(s)	373, 569
HpySE526I	ACGT	6 cut(s)	51, 331, 398, 717, 793, 885
Hsp92I	GRCGYC	2 cut(s)	21, 938
Hsp92II	CATG	5 cut(s)	127, 352, 439, 478, 704
HspAI	GCGC	2 cut(s)	147, 596
KflI	GGGWCCC	1 cut(s)	319
Ksp22I	TGATCA	1 cut(s)	831
KspAI	GTTAAC	1 cut(s)	370
Kzo9I	GATC	5 cut(s)	113, 745, 750, 831, 970
LweI	GCATC	3 cut(s)	142, 201, 681
MaeI	CTAG	3 cut(s)	144, 186, 252
MaeII	ACGT	6 cut(s)	51, 331, 398, 717, 793, 885
MaeIII	GTNAC	5 cut(s)	43, 355, 454, 794, 875
MalI	GATC	5 cut(s)	115, 747, 752, 833, 972
MboI	GATC	5 cut(s)	113, 745, 750, 831, 970
MboII	GAAGA	1 cut(s)	271
MfeI	CAATTG	1 cut(s)	801
MflI	RGATCY	1 cut(s)	113
MhlI	GDGCHC	2 cut(s)	312, 348
MlsI	TGGCCA	2 cut(s)	269, 674
MluCI	AATT	7 cut(s)	95, 631, 644, 709, 739, 767, 801
MluNI	TGGCCA	2 cut(s)	269, 674
MlyI	GAGTC	2 cut(s)	28, 455
MmeI	TCCRAC	1 cut(s)	796
MnlI	CCTC	9 cut(s)	34, 182, 328, 546, 584, 812, 913, 926, 966
Mox20I	TGGCCA	2 cut(s)	269, 674
Mph1103I	ATGCAT	1 cut(s)	696
MscI	TGGCCA	2 cut(s)	269, 674
MseI	TTAA	6 cut(s)	108, 369, 414, 492, 771, 780
MslI	CAYNNNNRTG	3 cut(s)	50, 353, 699
Msp20I	TGGCCA	2 cut(s)	269, 674
MspI	CCGG	4 cut(s)	69, 294, 539, 812
MspR9I	CCNGG	3 cut(s)	69, 303, 855
MunI	CAATTG	1 cut(s)	801
MvaI	CCWGG	2 cut(s)	303, 855
MvnI	CGCG	1 cut(s)	596
MwoI	GCNNNNNNNGC	4 cut(s)	20, 241, 671, 901
NciI	CCSGG	1 cut(s)	69
NcoI	CCATGG	1 cut(s)	700
NdeII	GATC	5 cut(s)	113, 745, 750, 831, 970
NheI	GCTAGC	1 cut(s)	143
NlaIII	CATG	5 cut(s)	127, 352, 439, 478, 704
NlaIV	GGNNCC	4 cut(s)	310, 311, 320, 321
NmuCI	GTSAC	4 cut(s)	43, 355, 454, 875
NsiI	ATGCAT	1 cut(s)	696
NspI	RCATGY	1 cut(s)	352
OliI	CACNNNNGTG	1 cut(s)	50
PciI	ACATGT	1 cut(s)	348
PcsI	WCGNNNNNNNCGW	1 cut(s)	450
PfeI	GAWTC	1 cut(s)	944
PflMI	CCANNNNNTGG	1 cut(s)	721
PkrI	GCNGC	1 cut(s)	130
PleI	GAGTC	2 cut(s)	28, 454
PmaCI	CACGTG	2 cut(s)	332, 399
PmlI	CACGTG	2 cut(s)	332, 399
PpsI	GAGTC	2 cut(s)	28, 454
Ppu21I	YACGTR	4 cut(s)	332, 399, 718, 794
PpuMI	RGGWCCY	1 cut(s)	319
PscI	ACATGT	1 cut(s)	348
Psp5II	RGGWCCY	1 cut(s)	319
Psp6I	CCWGG	2 cut(s)	301, 853
PspCI	CACGTG	2 cut(s)	332, 399
PspGI	CCWGG	2 cut(s)	301, 853
PspN4I	GGNNCC	4 cut(s)	310, 311, 320, 321
PspOMI	GGGCCC	1 cut(s)	308
PspPI	GGNCC	3 cut(s)	308, 309, 319
PspPPI	RGGWCCY	1 cut(s)	319
PsuI	RGATCY	1 cut(s)	113
RsaI	GTAC	3 cut(s)	29, 642, 792
RsaNI	GTAC	3 cut(s)	28, 641, 791
RseI	CAYNNNNRTG	3 cut(s)	50, 353, 699
SaqAI	TTAA	6 cut(s)	108, 369, 414, 492, 771, 780
SatI	GCNGC	1 cut(s)	129
Sau3AI	GATC	5 cut(s)	113, 745, 750, 831, 970
Sau96I	GGNCC	3 cut(s)	308, 309, 319
SchI	GAGTC	2 cut(s)	28, 455
ScrFI	CCNGG	3 cut(s)	69, 303, 855
SduI	GDGCHC	2 cut(s)	312, 348
SfaNI	GCATC	3 cut(s)	142, 201, 681
SinI	GGWCC	1 cut(s)	319
SmiMI	CAYNNNNRTG	3 cut(s)	50, 353, 699
SnaBI	TACGTA	1 cut(s)	794
Sse9I	AATT	7 cut(s)	95, 631, 644, 709, 739, 767, 801
SsiI	CCGC	2 cut(s)	129, 785
SspMI	CTAG	3 cut(s)	144, 186, 252
StyD4I	CCNGG	3 cut(s)	67, 301, 853
StyI	CCWWGG	3 cut(s)	609, 700, 896
TaaI	ACNGT	3 cut(s)	7, 361, 640
TaiI	ACGT	6 cut(s)	54, 334, 401, 720, 796, 888
TaqI	TCGA	4 cut(s)	179, 576, 635, 678
TasI	AATT	7 cut(s)	95, 631, 644, 709, 739, 767, 801
TatI	WGTACW	1 cut(s)	640
TauI	GCSGC	1 cut(s)	131
TfiI	GAWTC	1 cut(s)	944
Tru1I	TTAA	6 cut(s)	108, 369, 414, 492, 771, 780
Tru9I	TTAA	6 cut(s)	108, 369, 414, 492, 771, 780
TscAI	CASTG	1 cut(s)	320
TseFI	GTSAC	4 cut(s)	43, 355, 454, 875
Tsp45I	GTSAC	4 cut(s)	43, 355, 454, 875
TspDTI	ATGAA	2 cut(s)	452, 878
TspGWI	ACGGA	2 cut(s)	126, 572
TspRI	CASTG	1 cut(s)	320
Van91I	CCANNNNNTGG	1 cut(s)	721
VpaK11BI	GGWCC	1 cut(s)	319
XapI	RAATTY	2 cut(s)	95, 767
XceI	RCATGY	1 cut(s)	352
XmiI	GTMKAC	2 cut(s)	201, 510
XspI	CTAG	3 cut(s)	144, 186, 252
Zsp2I	ATGCAT	1 cut(s)	696

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.