Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0004626

Physical Location & Seq

Genomic Coordinates Reverse (-)

31293705 .. 31294611

Gene Structure 907 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1233900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGTGTGTTAACTATGTTGATCCATTGCTAAGGTCACCGATAGTCAGTGACGTGGCAAATGAAACTGTGGTGAAACTCTCTAGATGTACTGCTCCACCTCTTTGTAATTGGGCTCTTGACATTGCTACGGCTTTGCGCTTAGTTGGGACTGAAGAAGTTCGTCTTGTGTTGGATATGGTTTCATCGGTTGGTGAAGGGGAAGCCAATGAAAGACCATCTTTGAGTCTTTTTGAGCGAATAATTAATGGCCTTTCTGTATCTTGTAAATCAGGACCTCTTCCTATAGATTCTTTTACCGTTGTGTTCCCTATACTGGAGCGAATTCTGTTATGCTCTAAGAAGACGGGACTTCACAGTGATGTGCTTCAGATTCTGTATCTGCACATGGACCCCCTATTACCCCTTCCAAGGGTTCGAATGATTTCAGTTCTTTATCATGCTCTTGGTGTTGTTCCAGCTTATCAAGCCTCTGTTGGACCTGCGTTGAACGAGTTGTGTTTGGGCCTGCGACCAGATGAAGTGGCAGCATTATGTTATTTCTATTTTTACTTTAATTTTTTTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009682 GO:0016020 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLASP_N HEAT HEAT_2

Protein Analysis

189

Amino Acids

20.77

Weight (kDa)

5.33

Isoelectric Point (pI)

40.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004626)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64790 AT1G64790 AT1G64790
fragaria_vesca	FvH4_6g01410 FvH4_6g01410
malus_domestica	MD04G1233800.v1.1 MD04G1233900.v1.1 MD04G1234100.v1.1 MD12G1252000.v1.1
prunus_persica	Prupe.6G353600_v2.0.a1 Prupe.6G353600_v2.0.a1 Prupe.6G353600_v2.0.a1 Prupe.6G353600_v2.0.a1 Prupe.6G353600_v2.0.a1
pyrus_communis	pycom04g20770 pycom04g20790 pycom07g20320 pycom12g23140
rosa_chinensis	RchiOBHm_Chr3g0449041 RchiOBHm_Chr6g0282721
rosa_laevigata	RLG00000025859
rosa_multiflora	Rmu_co8514751.1_g000001
rosa_roxburghii	Rroxscaffold_6G00427150 Rroxscaffold_7G00190110
rosa_rugosa	Rorug02G0617500
rosa_samantha	Rh3AG016000 Rh3BG016200 Rh3CG015200 Rh3DG016500
rosa_wichuraiana	Rw3G001200 Rw5G031850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	487
AclWI	GGATC	1 cut(s)	14
AcsI	RAATTY	1 cut(s)	321
AcuI	CTGAAG	2 cut(s)	171, 350
AfaI	GTAC	1 cut(s)	88
AfiI	CCNNNNNNNGG	3 cut(s)	313, 408, 409
AgsI	TTSAA	1 cut(s)	487
AjiI	CACGTC	1 cut(s)	52
AluBI	AGCT	1 cut(s)	458
AluI	AGCT	1 cut(s)	458
AlwI	GGATC	1 cut(s)	14
AlwNI	CAGNNNCTG	1 cut(s)	373
AoxI	GGCC	2 cut(s)	247, 502
ApeKI	GCWGC	1 cut(s)	524
ApoI	RAATTY	1 cut(s)	321
AseI	ATTAAT	1 cut(s)	243
Asp700I	GAANNNNTTC	2 cut(s)	156, 421
AspLEI	GCGC	1 cut(s)	138
AspS9I	GGNCC	4 cut(s)	272, 388, 476, 502
AsuHPI	GGTGA	3 cut(s)	27, 82, 203
AsuII	TTCGAA	1 cut(s)	415
AvaII	GGWCC	3 cut(s)	272, 388, 476
BanII	GRGCYC	1 cut(s)	115
BbsI	GAAGAC	1 cut(s)	347
BbvI	GCAGC	1 cut(s)	536
BccI	CCATC	1 cut(s)	223
BceAI	ACGGC	1 cut(s)	144
BfaI	CTAG	1 cut(s)	81
BfmI	CTRYAG	1 cut(s)	282
BfuAI	ACCTGC	1 cut(s)	487
BisI	GCNGC	1 cut(s)	525
BlsI	GCNGC	1 cut(s)	526
Bme18I	GGWCC	3 cut(s)	272, 388, 476
BmgBI	CACGTC	1 cut(s)	52
BmgT120I	GGNCC	4 cut(s)	272, 388, 476, 502
BmiI	GGNNCC	1 cut(s)	390
BpiI	GAAGAC	1 cut(s)	347
BpmI	CTGGAG	1 cut(s)	335
Bpu10I	CCTNAGC	1 cut(s)	29
Bpu14I	TTCGAA	1 cut(s)	415
BsaJI	CCNNGG	1 cut(s)	407
Bsc4I	CCNNNNNNNGG	3 cut(s)	313, 408, 409
Bse1I	ACTGG	1 cut(s)	318
Bse3DI	GCAATG	2 cut(s)	23, 120
BseDI	CCNNGG	1 cut(s)	407
BseLI	CCNNNNNNNGG	3 cut(s)	313, 408, 409
BseMI	GCAATG	2 cut(s)	23, 120
BseNI	ACTGG	1 cut(s)	318
BseXI	GCAGC	1 cut(s)	536
BsgI	GTGCAG	1 cut(s)	365
BshFI	GGCC	2 cut(s)	249, 504
BslFI	GGGAC	2 cut(s)	160, 360
BslI	CCNNNNNNNGG	3 cut(s)	313, 408, 409
BsmFI	GGGAC	2 cut(s)	160, 360
BsnI	GGCC	2 cut(s)	249, 504
Bsp119I	TTCGAA	1 cut(s)	415
Bsp1286I	GDGCHC	1 cut(s)	115
Bsp143I	GATC	1 cut(s)	19
BspANI	GGCC	2 cut(s)	249, 504
BspLI	GGNNCC	1 cut(s)	390
BspMI	ACCTGC	1 cut(s)	487
BspPI	GGATC	1 cut(s)	14
BspT104I	TTCGAA	1 cut(s)	415
BsrDI	GCAATG	2 cut(s)	23, 120
BsrI	ACTGG	1 cut(s)	318
BssECI	CCNNGG	1 cut(s)	407
BssMI	GATC	1 cut(s)	19
BssT1I	CCWWGG	1 cut(s)	407
Bst4CI	ACNGT	3 cut(s)	67, 298, 356
Bst6I	CTCTTC	1 cut(s)	282
BstBI	TTCGAA	1 cut(s)	415
BstC8I	GCNNGC	1 cut(s)	506
BstDEI	CTNAG	3 cut(s)	29, 139, 336
BstEII	GGTNACC	1 cut(s)	33
BstHHI	GCGC	1 cut(s)	138
BstKTI	GATC	1 cut(s)	22
BstMBI	GATC	1 cut(s)	19
BstMWI	GCNNNNNNNGC	1 cut(s)	464
BstPI	GGTNACC	1 cut(s)	33
BstSFI	CTRYAG	1 cut(s)	282
BstV1I	GCAGC	1 cut(s)	536
BstV2I	GAAGAC	1 cut(s)	347
BsuRI	GGCC	2 cut(s)	249, 504
BtrI	CACGTC	1 cut(s)	52
BtsIMutI	CAGTG	2 cut(s)	52, 361
BveI	ACCTGC	1 cut(s)	487
Cac8I	GCNNGC	1 cut(s)	506
CaiI	CAGNNNCTG	1 cut(s)	373
CfoI	GCGC	1 cut(s)	138
Cfr13I	GGNCC	4 cut(s)	272, 388, 476, 502
Csp6I	GTAC	1 cut(s)	87
CviAII	CATG	2 cut(s)	385, 437
CviJI	RGCY	7 cut(s)	113, 131, 203, 249, 458, 467, 504
CviKI_1	RGCY	7 cut(s)	113, 131, 203, 249, 458, 467, 504
CviQI	GTAC	1 cut(s)	87
DdeI	CTNAG	3 cut(s)	29, 139, 336
DpnI	GATC	1 cut(s)	21
DpnII	GATC	1 cut(s)	19
Eam1104I	CTCTTC	1 cut(s)	282
EarI	CTCTTC	1 cut(s)	282
Eco130I	CCWWGG	1 cut(s)	407
Eco24I	GRGCYC	1 cut(s)	115
Eco47I	GGWCC	3 cut(s)	272, 388, 476
Eco57I	CTGAAG	2 cut(s)	171, 350
Eco91I	GGTNACC	1 cut(s)	33
EcoO109I	RGGNCCY	1 cut(s)	272
EcoO65I	GGTNACC	1 cut(s)	33
EcoRI	GAATTC	1 cut(s)	321
EcoT14I	CCWWGG	1 cut(s)	407
EcoT38I	GRGCYC	1 cut(s)	115
ErhI	CCWWGG	1 cut(s)	407
FaeI	CATG	2 cut(s)	388, 440
FaiI	YATR	8 cut(s)	15, 176, 284, 311, 331, 386, 438, 532
FalI	AAGNNNNNCTT	4 cut(s)	147, 179, 202, 234
FaqI	GGGAC	2 cut(s)	160, 360
FatI	CATG	2 cut(s)	384, 436
Fnu4HI	GCNGC	1 cut(s)	525
FriOI	GRGCYC	1 cut(s)	115
Fsp4HI	GCNGC	1 cut(s)	525
FspBI	CTAG	1 cut(s)	81
GlaI	GCGC	1 cut(s)	137
GluI	GCNGC	1 cut(s)	525
GsuI	CTGGAG	1 cut(s)	335
HaeIII	GGCC	2 cut(s)	249, 504
HhaI	GCGC	1 cut(s)	138
Hin1II	CATG	2 cut(s)	388, 440
Hin6I	GCGC	1 cut(s)	136
HinP1I	GCGC	1 cut(s)	136
HincII	GTYRAC	1 cut(s)	10
HindII	GTYRAC	1 cut(s)	10
HinfI	GANTC	3 cut(s)	223, 287, 370
HpaI	GTTAAC	1 cut(s)	10
HphI	GGTGA	3 cut(s)	27, 82, 203
Hpy166II	GTNNAC	1 cut(s)	10
Hpy188I	TCNGA	1 cut(s)	369
Hpy188III	TCNNGA	3 cut(s)	81, 116, 270
Hpy8I	GTNNAC	1 cut(s)	10
HpyAV	CCTTC	2 cut(s)	188, 413
HpyCH4III	ACNGT	3 cut(s)	67, 298, 356
HpyCH4IV	ACGT	1 cut(s)	51
HpyCH4V	TGCA	1 cut(s)	382
HpyF10VI	GCNNNNNNNGC	1 cut(s)	464
HpyF3I	CTNAG	3 cut(s)	29, 139, 336
HpySE526I	ACGT	1 cut(s)	51
Hsp92II	CATG	2 cut(s)	388, 440
HspAI	GCGC	1 cut(s)	136
KspAI	GTTAAC	1 cut(s)	10
Kzo9I	GATC	1 cut(s)	19
LmnI	GCTCC	2 cut(s)	97, 316
LpnPI	CCDG	6 cut(s)	255, 299, 468, 492, 518, 525
Lsp1109I	GCAGC	1 cut(s)	536
MaeI	CTAG	1 cut(s)	81
MaeII	ACGT	1 cut(s)	51
MaeIII	GTNAC	2 cut(s)	33, 47
MalI	GATC	1 cut(s)	21
MboI	GATC	1 cut(s)	19
MboII	GAAGA	3 cut(s)	164, 269, 352
MhlI	GDGCHC	1 cut(s)	115
MluCI	AATT	4 cut(s)	106, 240, 321, 553
MlyI	GAGTC	1 cut(s)	232
MmeI	TCCRAC	2 cut(s)	150, 454
MnlI	CCTC	3 cut(s)	108, 285, 478
MroXI	GAANNNNTTC	2 cut(s)	156, 421
MseI	TTAA	3 cut(s)	9, 243, 552
MslI	CAYNNNNRTG	1 cut(s)	357
MwoI	GCNNNNNNNGC	1 cut(s)	464
NdeII	GATC	1 cut(s)	19
NlaIII	CATG	2 cut(s)	388, 440
NlaIV	GGNNCC	1 cut(s)	390
NmuCI	GTSAC	2 cut(s)	33, 47
NspV	TTCGAA	1 cut(s)	415
PdmI	GAANNNNTTC	2 cut(s)	156, 421
PfeI	GAWTC	2 cut(s)	287, 370
PkrI	GCNGC	1 cut(s)	526
PleI	GAGTC	1 cut(s)	231
PpsI	GAGTC	1 cut(s)	231
PpuMI	RGGWCCY	1 cut(s)	272
PshBI	ATTAAT	1 cut(s)	243
Psp5II	RGGWCCY	1 cut(s)	272
PspEI	GGTNACC	1 cut(s)	33
PspN4I	GGNNCC	1 cut(s)	390
PspPI	GGNCC	4 cut(s)	272, 388, 476, 502
PspPPI	RGGWCCY	1 cut(s)	272
PstNI	CAGNNNCTG	1 cut(s)	373
RsaI	GTAC	1 cut(s)	88
RsaNI	GTAC	1 cut(s)	87
RseI	CAYNNNNRTG	1 cut(s)	357
SaqAI	TTAA	3 cut(s)	9, 243, 552
SatI	GCNGC	1 cut(s)	525
Sau3AI	GATC	1 cut(s)	19
Sau96I	GGNCC	4 cut(s)	272, 388, 476, 502
SchI	GAGTC	1 cut(s)	232
SduI	GDGCHC	1 cut(s)	115
SetI	ASST	6 cut(s)	35, 54, 100, 277, 460, 481
SfcI	CTRYAG	1 cut(s)	282
SfuI	TTCGAA	1 cut(s)	415
SinI	GGWCC	3 cut(s)	272, 388, 476
SmiMI	CAYNNNNRTG	1 cut(s)	357
Sse9I	AATT	4 cut(s)	106, 240, 321, 553
SspMI	CTAG	1 cut(s)	81
StyI	CCWWGG	1 cut(s)	407
TaaI	ACNGT	3 cut(s)	67, 298, 356
TaiI	ACGT	1 cut(s)	54
TaqI	TCGA	1 cut(s)	415
TasI	AATT	4 cut(s)	106, 240, 321, 553
TatI	WGTACW	1 cut(s)	86
TfiI	GAWTC	2 cut(s)	287, 370
Tru1I	TTAA	3 cut(s)	9, 243, 552
Tru9I	TTAA	3 cut(s)	9, 243, 552
TscAI	CASTG	2 cut(s)	52, 361
TseFI	GTSAC	2 cut(s)	33, 47
TseI	GCWGC	1 cut(s)	524
Tsp45I	GTSAC	2 cut(s)	33, 47
TspDTI	ATGAA	4 cut(s)	75, 171, 222, 531
TspRI	CASTG	2 cut(s)	52, 361
VpaK11BI	GGWCC	3 cut(s)	272, 388, 476
VspI	ATTAAT	1 cut(s)	243
XapI	RAATTY	1 cut(s)	321
XbaI	TCTAGA	1 cut(s)	80
XmnI	GAANNNNTTC	2 cut(s)	156, 421
XspI	CTAG	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.